Christophe KLOPP
- Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)
Publications
Publications
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A Cattle Pangenome Approach Reveals Novel Non-Reference Unique Insertions and Their Impact on Economic TraitsPlant and Animal Genome Conference, Jan 2026, San Diego (CA), United States |
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Integrating Structural Variants into Sequence-Based GWAS Using a Pangenome and Imputation Framework in Dairy CattlePlant and Animal Genome Conference, Jan 2026, San Diego (CA), United States |
Diversité et structure génomique d’une population de truite en expansion aux Iles Kerguelen : mise au point d’une approche de PoolseqINRAE Genomics, INRAE, Jun 2025, Clermont-Ferrand, France |
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Metabolic Responses of Oxygenic Photogranules to Carbon and Light Fluctuations: Insights from Longitudinal Metabolomics1. International Conference on Photogranules, Sep 2025, Delft, Netherlands |
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Genetic differentiation along an ocean/river gradient captures the signature of intragenerational selection in the European eel (Anguilla anguilla)FSBI 2024 Annual Symposium, Jul 2024, Bilbao, Spain |
What is the importance of genetic load in successful biological invasions of pests?Environmental and Agronomical Genomics 2024 symposium, Feb 2024, Toulouse, France |
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Construction and characterization of a comprehensive ovine pangenome from 11 breeds provides new insights into their genetic diversity75. Annual Meeting of the European Federation of Animal Science (EAAP 2024), Sep 2024, Florence (IT), Italy |
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The construction of a cattle pangenome for 14 French dairy and beef breeds provides new insights into their genetic diversity.75. Annual Meeting of the European Federation of Animal Science (EAAP 2024), European Federation of Animal Science (EAAP), Sep 2024, Florence, Italy. pp.288 |
The puzzling genome of Vanilla planifolia : current knowledge and applicationsInternational Conference on Comparative Biology of Monocotyledons (Monocots VII), Mar 2024, San José, Costa Rica. 1 p |
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Can Neural Networks be used to Predict Cross-Species Annotations of Chromatin Regulation ?Journée Bioinfo/Biostat GenoToul, Nov 2024, Toulouse, France |
Advances in reconstructing the genome of Vanilla planifolia: Addressing partial endoreplication challengesInternational Vanilla Congress (IVC 2024), Cirad; Université de la Réunion, Jun 2024, Saint-Pierre, Réunion. pp.22 |
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Improvement of the Bos taurus Genome Assembly using New Sequencing TechnologiesDiscoveries Roadshow 2023 - PacBio, PacBio, May 2023, Paris, France |
When bugs become pests: Does the genetic load matter for invading species?12. Trends in Biodiversity and Evolution Conferences (TiBE 2023) - Invaders on the Horizon! Advancing Invasion Science from Genes to Ecosystems and Society, BIOPOLIS-CIBIO; University of Porto; University of Montpellier, Nov 2023, Villa do Conde, Portugal |
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Genotyping a thousand animals using low coverage sequencing and imputationGenotoul biostat bioinfo day, Genotoul, Nov 2023, Toulouse, France |
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A lncRNA gene-enriched atlas for GRCg7b chicken genome and its functional annotation across 47 tissues39. Congress of the international society for animal genetics (ISAG), Jul 2023, Cape Town, South Africa. pp.47 |
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RNA-SEQ data for reliable SNP detection and genotype calling in livestock species: interest for coding variant characterization and cis-regulation analysis by allele-specific expression26. World's Poultry Congress (WPC), Aug 2022, Paris, France. pp.405 |
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Cellules germinales primordiales aviaires au cœur des avancées de la conservation des ressources génétiques et de l’édition des génomes. L’exemple français14. Journées de la Recherche Avicole et Palmipèdes à Foie Gras, Mar 2022, Tours, France. pp.115-123 |
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Transgenerational epigenetics in quailGenotoul Biostat Bioinfo Day, Dec 2022, Castanet-Tolosan, France |
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A yeast product improves the efficiency of a processed animal protein diet in rainbow trout by modulating the gut responseInternational Symposium of Fish Nutrition and Feeding, ISFNF, Jun 2022, Sorrento, Italy |
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UN EXTRAIT DE LEVURE AMELIORE L'EFFICACITE D'UN REGIME A BASE DE PROTEINES ANIMALES TRANSFORMEES CHEZ LA TRUITE ARC-EN-CIEL ET MODULE LA REPONSE INTESTINALE7èmes Journées Recherche Filière Piscicole, ITAVI, Jul 2022, Paris, France |
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French avian cryobank: development of reproductive biotechnologies based on primordial germ cells (PGCs) and investigation of the impact of in vitro steps on PGCs integrity and reproductive capacity26è World's Poultry Congress,, May 2022, Webinar, France |
In search of the honey bee centromeres: regions with tandem repeats high at content and low recombination rates9th European Congress of Apidology, Sep 2022, Belgrade, Serbia |
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RNA-seq data for detecting reliable SNPs & genotypes in livestock species: interest for coding variant characterization and cis-regulation analysis by allele-specific expression !World Poultry Congress (WPC) 2022, Aug 2022, Paris, France |
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The invasive hornet Vespa velutina carries both honey bee viruses and new viruses52nd Annual Meeting of the Society for Invertebrate Pathology, 2021, Valencia, Spain |
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Deciphering the molecular mechanisms of pesticide tolerance of the soil engineer biodiversitySETAC Europe 30th Annual Meeting, SETAC, May 2020, Dublin, Ireland |
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European Honeybee Subspecies Genomes at the Individual and Population LevelsPlant and Animal Genome, Sep 2020, San Diego, United States |
Le projet mille génomes gallus : comment partager les données de séquences pour mieux les utiliser13.Journées de la recherche avicole et des palmipèdes à foie gras, Mar 2019, Tours, France |
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The invasive hornet <em>Vespa velutina</em> carries both honey bee viruses and new viruses30ème Congrès UIEIS - Insectes Sociaux - Section Française, Aug 2019, Avignon, France |
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Integrated metabolomic and transcriptomic analysis evaluating heat and feed stress in layer chickens37. International Society for Animal Genetics (ISAG) Conference, Jul 2019, Lleida, Spain |
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Transcriptomic profiling of eggs of pikeperch (Sander lucioperca) reveals novel egg-quality-associated transcriptsAquaculture Europe 2019, European Aquaculture Society (EAS). BEL., Oct 2019, Berlin, Germany. 1672 p |
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Difficulties to compare egg quality: insights from a transcriptomic analysis7. International Workshop on the Biology of Fish Gametes, Sep 2019, Rennes, France. pp.61-62 |
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Transcriptomic profiling reveals novel biomarkers of egg quality in domesticated pikeperch, Sander lucioperca7. International Workshop on the Biology of Fish Gametes, Sep 2019, Rennes, France. pp.69-70 |
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An atlas of chicken long non-coding RNAs gathering multiple sources : gene models and expression across more than twenty tissuesPAG XXVII - Plant & Animal Genome Conference, Jan 2019, San Diego, United States |
Analysis of whole genome sequence data on a tropical admixed cattle breed: the creole cattle of Guadeloupe.Caribbean Science ans Innovation Meeting 2019, Oct 2019, Pointe-à-Pitre, Guadeloupe |
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Sex chromosome evolution in Poeciliid fishParadigm shift in sex chromosome evolution, Leibniz Institute of Freshwater Ecology and Inland Fisheries (IGB). DEU., Sep 2019, Berlin, Germany. 42 p., ⟨10.4126/FRL01-006417884⟩ |
Sauropsida ribosomal repeat : Deciphering of the intergenic spacer in chicken and terrapin37. International Society for Animal Genetics Conference (ISAG), Jul 2019, Lleida, Spain |
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De novo genome assembly of a western European Apis mellifera mellifera black beeApimondia, Sep 2019, Montréal, Canada |
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Tolerance of soil engineer to pesticide residual contamination in agrosystems: an omic strategy for studying the molecular mechanisms at play.5e Colloque de Génomique environnementale, Oct 2019, La Rochelle, France |
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Identification of Long Non-Coding RNAs Linked to Parasite Host Immune Response in SheepPAG XXVII - Plant and Animal Genome Conference, Jan 2019, San Diego, United States |
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Genome-wide approaches to elucidate evolution of sex determination systems and sex determining genes in fish8. International Symposium on the Biology of Vertebrate Sex Determination, Apr 2018, Kona (Hawaii), United States |
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Genome-wide study of structural variants in French dairy and beef breeds69. Annual Meeting of the European Federation of Animal Science (EAAP), Aug 2018, Dubrovnik, Croatia |
Transcriptome profiling of the honeybee parasite <em>Varroa destructor</em> provides new biological insights into the mite adult life cycleEurbee 2018 : 8th European Conference of Apidology, Sep 2018, Gent, Belgium |
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De novo genome assembly of a western European Apis mellifera mellifera black bee8. Congress of Apidology (EurBee 8), Sep 2018, Ghent, Belgium |
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Improving the knowledge of microchromosome repeated sequences in chicken by the sequencing of BAC clones with Pacific Bio technology23. International Colloquium on Animal Cytogenetics and Genomics (ICACG), Jun 2018, St Petersbourg, Russia. 360 p |
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Layers response to a suboptimal diet through phenotype and transcriptome changes in four tissues69. Annual Meeting of the European Association of Animal Production, Aug 2018, Dubrovnik, Croatia |
Etude multi-sites du transcriptome de dreissenidés : quels motifs de réponses ?Congrès de la Société d'Ecotoxicologie Fondamentale et Appliquée, Jun 2018, Montpellier, France |
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An integrated information system dedicated to oak genomics and geneticsPAG XXVI Plant and Animal Genome Conference, Jan 2018, San Diego, United States. pp.27 slides |
In grafted grapevines, physiological, transcriptional and hormonal responses to nutrient availability are strongly influenced by the rootstock genetic background12. International Conference on Grapevine Breeding and Genetics (ICGBG), Jul 2018, Bordeaux, France. 306 p |
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Sex determination diversity in fish11. International Symposium on Reproductive Physiology of Fish, Instituto Nacional de Pesquisas da Amazônia (INPA). Manaus, BRA., Jun 2018, Manaus, Brazil. 251 p |
Transcriptomics data of liver and adipose tissue highlight lncRNAs as candidates for the lipid metabolism regulation in broilersPAG XXVI - Plant and Animal Genome Conference, Jan 2018, San Diego, United States |
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The route to the development of basal stem rot resistance in oil palm (Elaeis guineensis) via the discovery of lignin degradation process in the pathogen Ganoderma boninenseInternational Symposia on Tropical and Temperate Horticulture (ISTTH), Nov 2016, Cairns, Australia. pp.12, ⟨10.17660/ActaHortic.2018.1205.42⟩ |
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Identification of the master sex determining gene in Northern pike (Esox lucius, Esociformes, Teleosts) and the dynamic evolution of sex determination system within esociformes1. European Symposium on Sex Determination in Vertebrates, Mar 2017, Dinard, France |
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MINTIA : Metagenomic INserT BIoinformatic Annotation in Galaxy16th European Conference on Computational Biology, Jul 2017, Prague, Czech Republic |
GENESEA : développement de la sélection génomique chez le bar et la dauradeJournées Techniques du Sysaaf, Dec 2017, Rennes, France |
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Liver and whole blood transcriptome response to chronic heat exposure in laying hens36. International Conference on Animal Genetics (ISAG), Jul 2017, Dublin, Ireland. pp.15 |
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Evolution of gene expression in fish: The PhyloFish database8. Aquatic Models of Human Disease Conference, Jan 2017, Birmingham, United States |
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Expression de gènes dans le foie de canards nourris ad libitum ou gavés12. Journées de la Recherche Avicole et des Palmipèdes à Foie Gras, Apr 2017, Tours, France |
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Identification of the master determining gene in Northern pike (Esox lucius, Esociformes, Teleosts) and its evolution within esociformes19. European Testis Workshop, Jun 2016, Saint-Malo, France |
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Oak genome sequencing and evolutionGenomics and Forest Tree Genetics Conference, Institut National de Recherche Agronomique (INRA). UMR Biodiversité, Gènes et Communautés (1202)., May 2016, Arcachon, France. 134 p |
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Annotation of the oak genome sequence and associated bioinformatic resourcesIUFRO Genomics and Forest Tree Genetics, Institut National de Recherche Agronomique (INRA). UMR Biodiversité, Gènes et Communautés (1202)., May 2016, Arcachon, France. 134 p |
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Applicaciones de nuevas herramientas moleculares en el ganado Creole de Guadeloupe16. Simposio Iberoamericano sobre conservacion y utilizacion de recursos zoogeneticos, Oct 2015, Villavicencio, Colombia |
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Identification of the master sex determining gene in northern pike (Esox lucius, Esociformes, Teleosts) and its evolution within esociformes7. International Symposium on the Biology Vertebrate Sex Determination, Apr 2015, Kona, Hawaï, United States |
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Combining Genetics Mapping, Selective Sweeps, Genome Re-Requencing and Allele Specific Expression Reveals Several Serious Causative Genes for QTL RegionsInternational Plant & Animal Genome XXII (PAG), Jan 2014, San Diego, United States |
Rna-seq analysis of transcriptome response to VHS-V infection in two target tissues of resistant vs susceptible trout clonal lines10. World Congress of Genetics Applied to Livestock Production, Aug 2014, Vancouver, Canada |
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Rapid discovery of mutations responsible for sporadic dominant genetic defects in livestock using genome sequence data: enhancing the value of farm animals as model species10. World Congress of Genetics Applied to Livestock Production, Aug 2014, Vancouver, Canada |
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An avian coronavirus associated with fulminating disease of guinea fowl8th International Symposium on Avian Corona- and Metapneumoviruses and Complicating Pathogens, 2014, Rauishozhausen, Germany |
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DMRT1 turns on testicular differentiation during XX sex-reversal in the goat18. European Testis Workshop, May 2014, Elsinore, Denmark. 1 p |
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Integration of European eel transcriptome into the PHYLOFISH project, a high throughput phylogenomic analysis designed to study teleost gene evolution after whole genome duplicationEel genome symposium 2014, Jan 2014, Leiden, Netherlands |
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Identification de gènes différentiellement exprimés dans deux tissus cibles de lignées clonales de truite sensibles ou résistantes à la SHVSéminaire du Département de Génétique animale, Apr 2014, Fréjus, France. 1 p |
Analyse à grande échelle des ARN non codants longs exprimés au cours de la différenciation gonadique chez le bovinJournées d'Animation Scientifique Phase 2013, Institut National de Recherche Agronomique (INRA). UAR Département Physiologie Animale et Systèmes d'Elevage (0558)., Oct 2013, Paris, France. pp.1-2 |
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LncRNA expression and increased DNA methylation in a distal region upstream from the alphaS1 casein gene after once daily milkingInternational Plant and Animal Genome XXI, Scherago International Inc. Jersey City, NJ, USA., Jan 2013, San Diego, United States |
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Identification of six mutations responsible for prenatal mortality in dairy cattle64th Annual Meeting European Association for Animal Production (EAAP), Aug 2013, Nantes, France. pp.231 |
Transcriptome analysis of expressed sequence tags (ESTs) from the venom glands of the ant species Tetramorium bicarinatum (Hymenoptera: Formicidae)20th Meeting of the French-Society-of-Toxinology (SFET), Dec 2012, Paris, France. pp.2, ⟨10.1016/j.toxicon.2013.08.018⟩ |
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CHIPSTRAFFIC : identification des gènes cibles de facteurs de transcription bovins par ChIP et ChIP-seq dans l'endomètre et les tissus extra-embryonnaires à l'implantationSéminaire de restitution AIP Bioressources, Institut National de Recherche Agronomique (INRA). US Etude du Polymorphisme des Génomes Végétaux (1279)., Feb 2013, Paris, France. pp.106-108 |
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Analyse de transcriptomes de foies de canards par séquençage d’ARN (RNA-Seq)10. Journées de la Recherche Avicole et Palmipèdes à Foie Gras, La Rochelle., Mar 2013, La Rochelle, France |
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Utilisation des NGS pour la caractérisation génétique de lignées de poulet de chair et poules de ponte10. Journées de la Recherche Avicole et Palmipèdes à Foie Gras, Mar 2013, La Rochelle, France. pp.556-561 |
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La monotraite induit la méthylation d'une région régulatrice distale en amont du gène de la caséine- S120. Rencontres autour des Recherches sur les Ruminants, Institut de l'Elevage (IDELE). FRA. Institut National de la Recherche Agronomique (INRA)., Dec 2013, Paris, France. pp.79-81 |
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Genome-wide analysis of long non-coding RNAs expression during gonad differentiation in bovineEMBL Symposia The non coding genome, EMBO. DEU., Oct 2013, Heidelberg, Germany. 1 p |
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Ouverture d'un service d'autoformation en ligne : Pour se former en fonction de ses besoins du moment.JOBIM 2013 - Journées Ouvertes en Biologie, Informatique et Mathématiques, 2013, Toulouse, France. 3p |
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Identification de QTL associés à de la mortalité embryonnaire chez les bovins laitiers20. Rencontres autour des Recherches sur les Ruminants, Dec 2013, Paris, France. pp.145-148 |
An avian coronavirus associated with fulminating disease of guinea fowl1st Annual COST Action FA1207 meeting, 2013, Germany |
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Identification of candidate polymorphism in a QTL region by combining eQTL mapping with NGS data64th Annual Meeting of the European Federation of Animal Science (EAAP), Aug 2013, Nantes, France. pp.300 |
LncRNA expression and increased DNA methylation in a distal region upstream from the alphaS1 casein gene after once daily milkingConférences Jacques Monod "DNA methylation and demethylation", Centre National de la Recherche Scientifique (CNRS). FRA., Sep 2013, Roscoff, France |
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Using NGS data to characterize genetics of meet-type and egg-type chicken lines64th Annual Meeting of the European Federation of Animal Science (EAAP), Aug 2013, Nantes, France. pp.296 |
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Identification of five novel mutations responsible for prenatal mortality in dairy cattleInternational Plant & Animal Genome XXI, Jan 2013, San Diego, CA, United States |
An immune-related gene evolved into a conserved master sex-determining gene in the salmonid fish familyConférences Jacques Monod: “Avancées récentes sur l'évolution du sexe et des systèmes génétiques", May 2013, Roscoff, France |
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Concordance analysis: from QTL to candidate causative mutations64th Annual Meeting European Association for Animal Production (EAAP), Aug 2013, Nantes, France. pp.234 |
Long non-coding RNAs and sex-differentiating genes in bovines1.Course on non coding genome, Institut Curie. Paris, FRA., Jun 2012, Paris, France. 1 p |
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Identification of genes involved in bud dormancy in sessile oak (Quercus petraea Matt. Liebl) using RNA-seqIUFRO working group “Genetics of Quercus and Nothofagus”, Institut National de Recherche Agronomique (INRA). UMR Biodiversité, Gènes et Communautés (1202)., Oct 2012, Bordeaux, France. 1 p |
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Sequencing and analysis of the oak transcriptome using RNA-seq technologiesIUFRO working group “Genetics of Quercus and Nothofagus”, Institut National de Recherche Agronomique (INRA). UMR Biodiversité, Gènes et Communautés (1202)., Oct 2012, Bordeaux, France. 1 p |
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Involvment of [i]DMRT1[/i] in XX sex-reversed polled goats6. International Symposium on the Biology of Vertebrate Sex Determination, Vertebrate-biosex. USA., Apr 2012, Kona, Hawai, United States. 1 p |
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New insights into sex differentiation and determination for a better sex control in salmonidsAqua 2012, European Aquaculture Society (EAS). BEL., Sep 2012, Prague, Czech Republic |
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SUBERGENE: Developing genomics resources for cork-oak (Q. suber L.)IUFRO working group “Genetics of Quercus and Nothofagus”, Institut National de Recherche Agronomique (INRA). UMR Biodiversité, Gènes et Communautés (1202)., Oct 2012, Bordeaux, France. 2 p |
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GENIDOV: Gene network involved in ovarian development in goat and mouse9. Colloque Agenae / ANR, Colloque Génomique Animale et Microbienne, AGENAE - Analyse du Génome des Animaux d'Elevage (AGENAE). FRA., Mar 2012, La Rochelle, France. 1 p |
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MEETAC - Valorisation des données transcriptomiques bovines à l’interface mère-embryon pour une compréhension intégrée de l’implantation9. Colloque Agenae / ANR, Colloque Génomique Animale et Microbienne, AGENAE - Analyse du Génome des Animaux d'Elevage (AGENAE). FRA., Mar 2012, La Rochelle, France. pp.90 |
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DNA methylation and ncRNA transcription at aCSN1S1 regulatory region in the bovine mammary gland9.International Symposium on Milk Genomics and Human Health, International Milk Genomics Consortium (IMGC). Davis, USA., Oct 2012, Wageningen, Netherlands. pp.1 |
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Détection moléculaire et caractérisation de virus respiratoires du canard par une approche de séquençage à haut débitJournée SEVAB, Nov 2012, Toulouse, France |
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Molecular detection and characterization of duck respiratory viruses using unbiased high-throughput sequencingESVV 2012, european society for veterinary virology (ESVV)., Sep 2012, Madrid, Spain |
Goat genome assembly, availability of an international 50K SNP chip and RH panel: an update of the international goat genome consortium projects20. Conference of the Plant & Animal Genome, Plant & Animal Genome (PAG). USA., Jan 2012, San Diego, United States. 28 diapositives |
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Development of genomic resources to study the structure, function and evolution of the oak genomeIUFRO working group "Genetics of Quercus and Nothofagus", Institut National de Recherche Agronomique (INRA). UMR Biodiversité, Gènes et Communautés (1202)., Oct 2012, Bordeaux, France. 1 p |
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New insights on sex determination in salmonids6. International Symposium on The Biology of Vertebrate Sex Determination, Apr 2012, Kona (Hawaii), United States. pp.45 |
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Caractérisation d'un gène déterminant majeur du sexe conservé chez les salmonidés3. Journées de la Recherche Filière Piscicole, Jul 2012, Paris, France. pp.109 |
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Towards a high density SNP International Goat ChipPlant and Animal Genome, Jan 2011, San Diégo, United States |
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Maritime pine (Pinus pinaster) de novo transcriptome assembly3. workshop on "Statistical challenges on the 1000€ genome sequences in plants";StatSeq'2011, Apr 2011, Toulouse, France |
Characterization of rainbow trout gonad, brain and gill deep cDNA repertoires using a Roche 454-Titanium sequencing approachAnimation de l'axe technologique génomique de Biogenouest, Plateforme Génomique Santé Biogenouest®. FRA., Apr 2011, Rennes, France |
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Characterization of a microbiota of intestinal origin in white adipose tissue and stroma vascular fraction from healthy and patients according to their BMICongrès de la Société Francophone du Diabète, Mar 2011, Genève, Switzerland. pp.A32 |
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Diversité et biologie intégrative : des pistes à explorer pour combler le gap entre diversité génétique et diversité phénotypiqueCOLLOQUE FRB : Les Ressources Génétiques (RG) face aux nouveaux enjeux environnementaux, économiques et sociétaux, Sep 2011, Montpellier, France |
Développement de SNP chez la caille par séquençage haut-débit9. Journées de la Recherche Avicole, Mar 2011, Tours, France |
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Transcriptome analysis of bud dormancy in sessile oak (Quercus petraea (Matt.) Libel.) by 454 pyrosequencingConference on Forest Ecosystem Genomics and Adaptation, Jun 2010, Madrid, Spain |
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Bioinformatic analysis of Sanger and 454 ESTs in oakConference on Forest Ecosystem Genomics and Adaptation, Jun 2010, Madrid, Spain. pp.73 |
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Development of polymorphic markers in quail by new generation sequencing13. European Poultry Conference (EPC 2010), Aug 2010, Tours, France |
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Meetac - Valorisation des données transcriptomiques bovines à l’interface mère-embryon pour une compréhension intégrée de l’implantation (2009-2012)8. Journées AGENAE, Nov 2010, Bordeaux, France |
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Analysis of expressed sequence tags in maritime pine (Pinus pinaster Aiton)Conference on Forest Ecosystem Genomics and Adaptation, Jun 2010, Madrid, Spain |
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Pyroséquençage pour le développement d'EST et de SNP (PYRESAVI) chez le canard9. Journées de la Recherche sur les Palmipèdes à Foie Gras, Oct 2010, Bordeaux, France |
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Détection de SNP dans l'espèce caprine, un premier pas vers la génomique16. Rencontres Recherches Ruminants, Dec 2009, Paris, France |
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Utilisation dune puce 60 000 SNP pour cartographier finement des QTL affectant des caractères de production, de résistance aux maladies et de comportement chez les ovins16. Rencontres autour des Recherches sur les Ruminants, Dec 2009, Paris, France |
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Pyroséquençage pour le développement d'EST et de SNP aviaires8èmes Journées de la Recherche Avicole, Mar 2009, Paris, France. pp.594-598 |
Recherche de manifestations épigénétiques chez la pouleJournées Scientifiques, Département de Génétique Animale, Apr 2008, Lacanau, France |
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Profils transcriptomiques de foies de poulet soumis au jeûne : utilisation d'une puce à ADN de 20000 oligonucléotidesJournées Scientifiques, Département de Génétique Animale, Apr 2008, Lacanau, France |
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Projet de pyroséquençage pour le développement d'EST et de SNP aviaires.Journées Scientifiques, Département de Génétique Animale, Apr 2008, Lacanau |
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The INRA AGENAE program and the Agenae trout EST collections: first results applied to fish physiology researchExperimental Biology Annual Main Meeting, Mar 2004, Edinburgh, United Kingdom |
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Analyse du transcriptome de poule (Gallus) ; profil d'expression des ARNm de différents tissus et analyse du métabolisme des lipides.Colloque Génomique des animaux d'élevage, Seignosse-le-Penon, May 2003, Seignosse-le-Peignon, France |
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Avancées du transcriptome sur 4 espèces : bovin, porc, poulet, truiteColloque Génomique des Animaux d'Elevage, May 2003, Seignosse-le-Pénon, France |
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BReIF: une e-infrastructure pour accélérer l'utilisation de ressources biologiques diversifiéesTrans Numériques 2026, Feb 2026, Rennes, France. |
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A Strategy for Balanced Haplotype-Resolved De Novo Assembly of the Autotetraploid Genome of Medicago sativaJOBIM 2025 (Journées ouvertes de Bio-Informatique 2025), Jul 2025, Bordeaux, France |
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The pangenome of European white oaks : A new approach to assess genetic diversityDoctorales de la forêt, Feb 2025, Poitiers, France |
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Evaluating low-pass genotyping strategies using PARSEC, a scalable and modular Nextflow pipelineIntelligent Systems for Molecular Biology/European Conference on Computational Biology, Jul 2025, Liverpool, United Kingdom |
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Cross-Species Predictions of Chromatin Annotations using Neural NetworksEuropean Conference on Computational Biology 2025 (ECCB 2025), Jul 2025, Liverpool United Kingdom, United Kingdom |
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The Genotoul-Bioinfo platformJOBIM2025, Jul 2025, Bordeaux, France |
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Decoding ancient genomes: Genomics approaches and innovative species recognition pipeline for diadromous fishThe 20th Portugaliæ Genetica: DNA - Ancient and New (21-22 March 2024), Mar 2024, Porto, France. 2024, ⟨10.13140/RG.2.2.12906.53442⟩ |
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Transgenerational epigenetics in quail: targeting DNA methylation patterns to address the interplay between genetic and epigenetic mechanismsEcology and Evolution, Oct 2024, Lyon, France |
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Benchmarking of sequencing technologies for CpG methylation detection: applications to quail and pigLondon Calling 2024, May 2024, Londres, United Kingdom |
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Genomic imprinting in livestock species -Challenges of long reads sequencing from ONTAdvances in Genome Biology and Technology (AGBT), Apr 2024, Phoenix, United States. 2024 |
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DeFIS - Detection pipeline with k-mers analysis to identify speciesJOBIM, Jun 2024, Toulouse, France |
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A Bos taurus sequencing methods benchmark for assembly, haplotyping, and variant callingPlant and Genome San Diego 2024, Jan 2024, San Diego, United States. 10, 2024 |
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Major contribution to the bovine pangenome: whole genome sequences, SNPs, and structural variants of 154 bulls from 14 breedsPlant and Genome San Diego 2024, Jan 2024, San Diego, United States |
Identification of wild and domestic bees by non-destructive molecular methodsAPIMONDIA, Sep 2023, SANTIAGO DU CHILI, Chile. 2023 |
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A lncRNA gene-enriched atlas for GRCg7b chicken genome and its functional annotation across 47 tissues39. Congress of the international society for animal genetics (ISAG), Jul 2023, Cape Town, South Africa. , pp.78, 2023, Abstracts |
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Transgenerational epigenetics in quail: whole genome DNA methylation analysisEpigenetic Inheritance: Impact for Biology and Society, Aug 2023, Zurich, Switzerland |
A multidisciplinary approach to highlight the mechanisms supporting perceptual interactions in odor mixture13. Wartburg symposium on flavour chemistry and biology, Oct 2023, Eisenach, Germany |
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Construction of a 16S mini barcode library for french wild beesAPIMONDIA, Sep 2023, Santiago, Chile. 2023 |
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Volume reduction and automation of DNAprep libraries for low pass sequencingAssemblée générale France Génomique, Jun 2023, Paris, France |
Multidisciplinary approach to explore interactions in odor mixture perception45. annual meeting - association for chemoreception sciences (AChemS), Apr 2023, Bonita Springs, Florida, United States. |
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A lncRNA gene-enriched atlas for GRCg7b chicken genome using Ensembl, RefSeq and two FAANG databases74. Annual meeting of the european federation of animal science (EAAP), Aug 2023, Lyon, France. Wageningen Academic Publishers, Book of abstracts, 29, pp.932, 2023, Book of abstracts of the 74st annual meeting of the european federation of animal science |
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Partial endoreplication challenges whole genome assembly: the case of Vanilla planifolia (Orchidaceae)Plant Genomics and Gene Editing Congress: Europe, Apr 2022, The Hague, Netherlands. s.n., 1 poster, 2022 |
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CONSTRUCTION OF A 16S MINI BARCODE LIBRARY FOR FRENCH WILD BEES9. European Congress of Apidology, Sep 2022, Belgrade, Serbia |
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Transgenerational epigenetics in quailECCB2022 - 21st European Conference on Computational Biology, Sep 2022, Sitges, Spain |
Partial endoreplication challenges whole genome assembly: the case of #Vanilla planifolia# (Orchidaceae)Plant Genomics and Gene Editing Congress: Europe, Apr 2022, The Hague, Netherlands. 2022 |
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Structural variants detection and de novo genome assembly of a maize linePlant & Animal Genome Conference (PAG) 2022, Jan 2022, San Diego, United States |
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Preliminary results from Nanopore Q20+ sequencingJOBIM 2022 : Journées Ouvertes Biologie Informatique Mathématiques, Jul 2022, Rennes, France. 2022 |
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De novo assembly of 90 bovines genomes using PacBio CLR application comparison and optimizationAssemblée générale France Génomique, Jun 2022, Paris, France |
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De novo assembling 19 maize inbred lines of the European germplasm63rd Annual Maize Genetics Meeting, Mar 2021, virtuel, United States |
De novo assembling 19 maize inbred lines of importance for European breeding63rd Annual Maize Genetics Conference, Mar 2021, Visio conference, United States |
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Structural variants detection and de novo genome assembly of a Maize lineSMRT Leiden 2021 – Young Investigator Virtual Conference, May 2021, virtuel, Netherlands |
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De novo assembly of bovine genome using PacBio applicationsSMRT Leiden 2021 – Young Investigator Virtual Conference, May 2021, virtuel, Netherlands |
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A Long Read project to find optimal technologic combinations for genome assembly and variability, epigenetic marks detection and metagenomic analysisPAG XXVIII, Plant and Animal Genome, Jan 2020, San Diego, United States. 2020 |
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Whole metagenome analysis with metagWGSJOBIM2020, Jun 2020, Montpellier, France |
Layers response to suboptimal diet through phenotypic and transcriptomic changes in four tissuesPAG XXVII - Plant & Animal Genome Conference, Jan 2019, San Diego, United States. , 2019 |
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Identification of lncRNAs regulating variable stress-responding sheep naturally exposed to gastrointestinal nematode parasites37. Conference of the International Society for Animal Genetics (ISAG), Jul 2019, Lleida, Spain. , 2019 |
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Whole metagenome analysis with metagWGSJOBIM 2019, Jul 2019, Nantes, France. , 2019 |
Tolérance de la faune ingénieure du sol à la contamination résiduelle par les produits phytosanitaires dans les agroécosystèmes : approches omiques des mécanismes moléculaires en jeuColloque Ecophysiologie Animale 4 (CEPA4), Oct 2019, Rennes, France |
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Characterization of the sex determining system(s) of the Mexican tetra, Astyanax mexicanusParadigm shift in sex chromosome evolution, Sep 2019, Berlin, Germany. , pp.8-9, 2019, Workshop: Paradigm shift in sex chromosome evolution. ⟨10.4126/FRL01-006417884⟩ |
In vivo high-throughput identification of olfactory receptor repertoire coding for a blending mixture12. Wartburg symposium on flavour chemistry and biology, May 2019, Eisenach, Germany. 2019 |
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Single-molecule force spectroscopy to compare the surface properties of food Propionibacteria strains with distinct abilities for EPS productionSPM (scanning probe microscopy on soft and polymer materials), Aug 2018, Leuven, Belgium. 2018 |
Root transcriptomic responses of grafted grapevines to heterogeneous nitrogen availability depend on rootstock genotypePlant & Animal Genome Conference XXVI, 2018, San Diego, United States. 2018 |
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Analysis of whole genome sequence data on a tropical admixed cattle breed, the Creole cattle of GuadeloupeInternational Symposium on environmental and agronomical genomics, Nov 2018, Paris, France. , 2018 |
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Genome specific expression in the liver of mule and hinny duck hybrids10. European Symposium on Poultry Genetics (ESPG), Jun 2017, Saint-Malo, France. pp.1, 2017, Proceedings of the 10th European symposium on poultry genetics |
Recherche de régions génomiques responsables du diabète insipide et de la couleur de la coquille celadon chez la Caille japonaise par RADseq12. Journées de la Recherche Avicole et des Palmipèdes à Foie Gras, Apr 2017, Tours, France. ITAVI - Institut Technique de l'Aviculture, Journées de la Recherche Avicole et des Palmipèdes à Foie Gras, 12, 2017, Journées de la Recherche Avicole et des Palmipèdes à Foie Gras |
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Integrative and differential analysis of transcriptomes and chromatin accessibility regions reveals regulatory mechanisms involved in pig immune and metabolic functions36th International Society for Animal Genetics Conference, Jul 2017, Dublin, Ireland. 2017, ISAG 2017 - Genomes to Phenomes - Abstract Book |
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Liver and whole blood transcriptome response to chronic heat exposure in laying hens36. Conference of the International Society for Animal Genetics (ISAG), Jul 2017, Dublin, Ireland. 2017, Proceedings of the 36th International Conference on Animal Genetics |
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Phenotype and multi-tissue transcriptome response to diet changes in laying hens36. Conference of the International Society for Animal Genetics (ISAG), Jul 2017, Dublin, Ireland. 2017, ISAG 2017 - Genomes to Phenomes - Abstract Book |
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Long-non coding RNAs repertoires in liver and two T lymphocyte cell types in four livestock species36. Conference of the International Society for Animal Genetics (ISAG), Jul 2017, Dublin, Ireland. 2017, ISAG 2017 - Genomes to Phenomes - Abstract Book |
Une nouvelle facette du génome de poule : les genes “longs non-codants12. Journées de la Recherche Avicole et des Palmipèdes à Foie Gras, Apr 2017, Tours, France. ITAVI - Institut Technique de l'Aviculture, Journées de la Recherche Avicole et des Palmipèdes à Foie Gras, 2017, Journées de la Recherche Avicole et des Palmipèdes à Foie Gras |
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Profiling the landscape of transcription, chromatin accessibility and chromosome conformation of cattle, pig, chicken and goat genomes [FAANG pilot project]36th International Society for Animal Genetics Conference, Jul 2017, Dublin, Ireland. 2017, ISAG 2017 - Genomes to Phenomes - Abstract Book |
Functional exploration of naturally and artificially enriched rumen microbiomes reveals novel enzymatic synergies involved in plant cell wall breakdownFunctional Metagenomics, Sep 2016, Inderøy, Norway |
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The transcriptomic responses of grafted grapevines to heterogeneous nitrogen availability are rootstock-genotype dependentEMBO Conference Nitrogen 2016, Aug 2016, Montpellier, France. 2016 |
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Evolution des gènes et des génomes dans une démarche de soutien à la diversification d’espèces aquacolesJournées d’Animation des Crédits Incitatifs du Département de Physiologie Animale et Systèmes d’Elevage (JACI Phase 2016), Apr 2016, Tours, France. , 2016, Crédits incitatifs financés entre 2011 et 2014 |
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Long-non coding RNAs repertoire in liver and adipose tissue in chickenXXIV International Plant & Animal Genome (Pag), Jan 2016, San Diego, United States. 2016 |
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The PHYLOSEX project: Towards a better understanding of sex determination diversity and sex chromosome evolution in fish7. International Symposium on the Biology Vertebrate Sex Determination, Apr 2015, Kona, Hawaï, United States. 2015 |
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Genome discovery of deep frost-tolerant eucalyptus for breeding and molecular ecologyProCoGen final open conference, Promoting Conifer Genomic Resources, Nov 2015, Orléans, France. 75 p., 2015, ProCoGen final open conference. Promoting Conifer Genomic Resources |
La combinaison de cartographie de signatures de sélection, de re-séquençage de génomes et d'analyses d'expression révèle PARK2 et JAG2 comme nouveaux genes candidats régulant l'adiposité11. Journées de la Recherche Avicole et Palmipèdes à Foie Gras, Mar 2015, Tours, France. ITAVI - Institut Technique de l'Aviculture, Journées de la Recherche Avicole et des Palmipèdes à Foie Gras, 2015, Journées de la Recherche Avicole et Palmipèdes à Foie Gras |
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RNA-seq analysis of transcriptome response to VHS-V infection in two target tissues of resistant vs susceptible trout clonal lines22. International Plant and Animal Genome (PAG), Jan 2014, San Diego, United States. , 2014 |
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Applications de la génomique chez les races bovines locales tropicales - TROCADERO: TROpical CAttle linkage DEsequilibrium, Resequencing and OptimizationSéminaire SELGEN 2014, Dec 2014, Paris, France. 2014 |
Selective sweeps using hapFLK combined with genome re-sequencing data reveals strong candidate mutations in QTL regions in divergent chicken lines8th European Symposium on Poultry Genetics (ESPG), Sep 2013, Venise, Italy. 2013, Proceedings of the 8th European Symposium on Poultry Genetics |
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The PhyloFish project: an RNA-Seq approach coupled to high throughput phylogenomic analyses to study whole genome duplication impact on teleosts17. Evolutionary Biology Meeting at Marseilles, Sep 2013, Marseille, France. 2013, 17th Evolutionary Biology Meeting at Marseilles |
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« sig-learning » Plate-forme d'autoformation à la bio-informatiqueJOBIM 2013 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2013, Toulouse, France. , 2013 |
De novo assembly of Fagus sylvatica transcriptome based on Sanger and 454 ESTs: application in transcriptome-scale analysis of bud phenology and markers developmentIUFRO working group “Genetics of Quercus and Nothofagus”, Oct 2012, Bordeaux, France. 1 p., 2012 |
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Large-scale identification of the causative genetic variants influencing traits of economic interest in French dairy breedsPlant and Animal Genome, Jan 2012, San Diego, United States. 2012 |
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Novel models and strategies to unravel the genetic pathways involved in horn ontogenesisPlant and Animal Genome, Jan 2012, San Diego, United States. 2012 |
Characterization of a conserved master sex-determining gene in salmonids1. International Conference on Integrative Salmonid Biology ICISB, Jun 2012, Oslo, Norway. 2012, ICISB 2012 |
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Gene annotation with evolutionary support in teleosts with a focus on the salmonid lineage1. International Conference on Integrative Salmonid Biology ICISB, Jun 2012, Oslo, Norway. 2012, ICISB 2012 |
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From high throughput 454 GS FLX data analysis process of 16S RNA gene sequences using barcoding to bacterial community exploration4th Congress of European Microbiologists, Jun 2011, Genève, Switzerland. pp.0, 2011 |
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The ruminal level of trans-10 fatty acids of dairy cows is linked to the composition of bacterial community4. Congress of European Microbiologists, FEMS, Jun 2011, Genève, Switzerland. 1p, 2011 |
MicroRNAs expression during fish oogenesis and sex differentiation9. International Symposium on Reproductive Physiology of Fish, Aug 2011, Thrissur (Cochin), India. Indian Society for Education and Environment, Indian Journal of Science and Technology, 4 (S8), 2011, Proceedings of 9th International Symposium on Reproductive Physiology of Fish |
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Gene expression profiling during gonadal differentiation in rainbow trout <em>(Oncorhynchus mykiss)</em> using a next generation sequencing (NGS) approach9. International Symposium on Reproductive Physiology of Fish, Aug 2011, Thrissur (Cochin), India. Indian Society for Education and Environment, Indian Journal of Science and Technology, 4 (S8), 2011, Proceedings of 9th International Symposium on Reproductive Physiology of Fish |
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Characterization of novel testis specific genes during sex differentiation in rainbow trout [i](Oncorhynchus mykiss)[/i] using a next generation sequencing (NGS) approach44. Annual Meeting of the Society for the Study of Reproduction (SSR), Jul 2011, Portland, Oregon, United States. Society for the Study of Reproduction, Biology of Reproduction, 85 (SI), 2011, Biology of Reproduction |
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Development of polymorphic markers in quail by next generation sequencing32nd Conference of the International Society of Animal Genetics (ISAG), Jul 2010, Edinburgh, United Kingdom. 2010, Proceedings of the 32nd International Conference on Animal Genetics |
Contribution to the annotation of the chicken 20K oligo microarray of ARK-genomicsPlant & Animal Genomes, XVI Conference, Jan 2008, San Diego (US), United States. , 2008 |
Analyse phylogénomique des duplications géniques chez les poissons téléostéens : une approche PAR RNASeq[Rapport de recherche] ANR-10-GENM-017, University of Oregon; Centre National de la Recherche Scientifique (CNRS); Aix Marseille Université (AMU); INRA SCRIBE Station Commune de Recherche en Ichtyophysiologie. Biodiversité et Environnement. 2015 |
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Genome-wide characterization of RNA editing in chicken: lack of evidence for non-A-to-I events[University works] auto-saisine. 2014 |
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The Hi-C method2022 |
IntronSeekerLogiciel hal-05058489v1 |
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Pan1c (Pangenome at chromosome level)Logiciel hal-05034842v1 |
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D-GENIES2018 |
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DRAP: de novo RNA-Seq Assembly Pipeline2017 |
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Jflow: a workflow management system for web applications2016 |
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jvenn: an interactive Venn diagram viewer2014 |
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RNAbrowse: RNA-Seq de novo assembly results browser2014 |