Antoine Danchin

Publications

Article dans une revue (35)

Microbiome Notes—Building a Library of Descriptive Microbial Ecology Gareth Jenkins,Eric S Boyd,Antoine Danchin,Vincent Hervé Environmental Microbiology Reports, 2025, 17 (2), ⟨10.1111/1758-2229.70085⟩ Article dans une revue hal-05009644v1
Environmental Microbiology and Environmental Microbiology Reports : Two Journals, One Goal Gareth Jenkins,Eric Boyd,Antoine Danchin,Vincent Hervé,Megan Huggettet al. Environmental Microbiology, 2025, 27 (5), pp.e70078. ⟨10.1111/1462-2920.70078⟩ Article dans une revue hal-05060033v1
A model industrial workhorse: $Bacillus\ subtilis$ strain 168 and its genome after a quarter of a century Erhard Bremer,Alexandra Calteau,Antoine Danchin,Colin Harwood,John D Helmannet al. Microbial Biotechnology, 2023, 16 (6), pp.1203-1231. ⟨10.1111/1751-7915.14257⟩ Article dans une revue cea-04284953v1
A roadmap for the functional annotation of protein families: a community perspective Valérie De Crecy-Lagard,Rocio Amorin De Hegedus,Cecilia Arighi,Jill Babor,Alex Batemanet al. Database - The journal of Biological Databases and Curation, 2022, 2022, ⟨10.1093/database/baac062⟩ Article dans une revue hal-04281352v1
In vivo , in vitro and in silico : an open space for the development of microbe‐based applications of synthetic biology Antoine Danchin Microbial Biotechnology, 2021, 15 (1), pp.42-64. ⟨10.1111/1751-7915.13937⟩ Article dans une revue hal-04542701v1
Queuine, a bacterial-derived hypermodified nucleobase, shows protection in in vitro models of neurodegeneration Patricia Richard,Lucie Kozlowski,Hélène Guillorit,Patrice Garnier,Nicole Mcknightet al. PLoS ONE, 2021, 16 (8), pp.e0253216. ⟨10.1371/journal.pone.0253216⟩ Article dans une revue hal-04713901v1
Visualizing the invisible: class excursions to ignite children’s enthusiasm for microbes Terry J Mcgenity,Amare Gessesse,John E Hallsworth,Esther Garcia Cela,Carol Verheecke‐vaessenet al. Microbial Biotechnology, 2020, 13, pp.844-887. ⟨10.1111/1751-7915.13576⟩ Article dans une revue (article de synthèse) hal-02733228v1
Evaluating the probability of CRISPR‐based gene drive contaminating another species Virginie Courtier‐orgogozo,Antoine Danchin,Pierre‐henri Gouyon,Christophe Boëte Evolutionary Applications, 2020, ⟨10.1111/eva.12939⟩ Article dans une revue mnhn-02559844v1
Phylogenomics of expanding uncultured environmental Tenericutes provides insights into their pathogenicity and evolutionary relationship with Bacilli Yong Wang,Jiao-Mei Huang,Ying-Li Zhou,Alexandre Almeida,Robert D Finnet al. BMC Genomics, 2020, 21 (1), pp.408. ⟨10.1186/s12864-020-06807-4⟩ Article dans une revue inserm-02972477v1
A new transmission route for the propagation of the SARS-CoV-2 coronavirus Antoine Danchin,Tuen Wai Patrick Ng,Gabriel Turinici Biology, 2020, 10 (1), pp.10. ⟨10.1101/2020.02.14.20022939⟩ Article dans une revue hal-02872801v1
Biochemical and mathematical lessons from the evolution of the SARS- CoV-2 virus: paths for novel antiviral warfare Nicolas Cluzel,Amaury Lambert,Yvon Maday,Gabriel Turinici,Antoine Danchin Comptes Rendus. Biologies, 2020, 343 (2), pp.177-209. ⟨10.5802/crbiol.16⟩ Article dans une revue hal-02985714v2
Immunity after COVID-19: protection or sensitization ? Antoine Danchin,Gabriel Turinici Mathematical Biosciences, 2020, 331, pp.108499. ⟨10.1016/j.mbs.2020.108499⟩ Article dans une revue hal-02872798v1
Mutations in the Global Transcription Factor CRP/CAP: Insights from Experimental Evolution and Deep Sequencing Pernille Ott Frendorf,Ida Lauritsen,Agnieszka Sekowska,Antoine Danchin,Morten H. H. Nørholm Computational and Structural Biotechnology Journal, 2019, 17, pp.730-736. ⟨10.1016/j.csbj.2019.05.009⟩ Article dans une revue hal-02433736v1
Bacillus subtilis, the model Gram-positive bacterium: 20years of annotation refinement Rainer Borriss,Antoine Danchin,Colin R. Harwood,Claudine Médigue,Eduardo P. C. Rochaet al. Microbial Biotechnology, 2018, 11 (1), pp.3-17. ⟨10.1111/1751-7915.13043⟩ Article dans une revue cea-02291345v1
Retour sur les origines de la vie Antoine Danchin Médecine/Sciences, 2018, 34 (10), pp.857-864. ⟨10.1051/medsci/2018212⟩ Article dans une revue hal-02970083v1
The Enigmatic Genome of an Obligate Ancient Spiroplasma Symbiont in a Hadal Holothurian Li-Sheng He,Pei-Wei Zhang,Jiao-Mei Huang,Fang-Chao Zhu,Antoine Danchinet al. Applied and Environmental Microbiology, 2018, 84 (1), pp.e01965-17. ⟨10.1128/AEM.01965-17.⟩ Article dans une revue cea-04560397v1
Retour sur les origines de la vie Antoine Danchin Médecine/Sciences, 2018, 34 (11), pp.984-989. ⟨10.1051/medsci/2018234⟩ Article dans une revue hal-02970159v1
Genomic characterization of symbiotic mycoplasmas from the stomach of deep‐sea isopod bathynomus sp Yong Wang,Jiao‐mei Huang,Shao‐lu Wang,Zhao‐ming Gao,Ai‐qun Zhanget al. Environmental Microbiology, 2016, 18 (8), pp.2646-2659. ⟨10.1111/1462-2920.13411⟩ Article dans une revue istex hal-04570966v1
An updated metabolic view of the Bacillus subtilis 168 genome Eugeni Belda,Agnieszka Sekowska,François Le Fèvre,Anne Morgat,Damien Mornicoet al. Microbiology, 2013, 159 (Pt_4), pp.757-770. ⟨10.1099/mic.0.064691-0⟩ Article dans une revue hal-04578023v1
Distinct co-evolution patterns of genes associated to DNA polymerase III DnaE and PolC Stefan Engelen,David Vallenet,Claudine Médigue,Antoine Danchin BMC Genomics, 2012, 13 (1), pp.69. ⟨10.1186/1471-2164-13-69⟩ Article dans une revue hal-04579011v1
Cells need safety valves Antoine Danchin BioEssays, 2009, 31 (7), pp.769-773. ⟨10.1002/bies.200900024⟩ Article dans une revue hal-04581563v1
From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later Valérie Barbe,Stéphane Cruveiller,Frank Kunst,Patricia Lenoble,Guillaume Meuriceet al. Microbiology, 2009, 155 (6), pp.1758-1775. ⟨10.1099/mic.0.027839-0⟩ Article dans une revue hal-04581597v1
Small noncoding RNA GcvB is a novel regulator of acid resistance in Escherichia coli Ye Jin,Rory M Watt,Antoine Danchin,Jian-Dong Huang BMC Genomics, 2009, 10 (1), pp.165. ⟨10.1186/1471-2164-10-165⟩ Article dans une revue hal-04581684v1
Proteome analysis of the phenotypic variation process in Photorhabdus luminescens Evelyne Turlin,Géraldine Pascal,Jean-Claude Rousselle,Pascal Lenormand,Saravuth Ngoet al. Proteomics, 2006, 6 (9), pp.2705-2725. ⟨10.1002/PMIC.200500646⟩ Article dans une revue istex hal-02985560v1
Persistent biases in the amino acid composition of prokaryotic proteins Géraldine Pascal,Claudine Médigue,Antoine Danchin BioEssays, 2006, 28 (7), pp.726-738. ⟨10.1002/BIES.20431⟩ Article dans une revue istex hal-02985564v1
Regulation of the Bacillus subtilis ytmI operon, involved in sulfur metabolism Pierre Burguière,Juliette Fert,Isabelle Guillouard,Sandrine Auger,Antoine Danchinet al. Journal of Bacteriology, 2005, 87 (17), pp.6019-6030. ⟨10.1128/JB.187.17.6019-6030.2005⟩ Article dans une revue hal-02681047v1
Universal biases in protein composition of model prokaryotes Géraldine Pascal,Claudine Médigue,Antoine Danchin Proteins - Structure, Function and Bioinformatics, 2005, 60 (1), pp.27-35. ⟨10.1002/PROT.20475⟩ Article dans une revue istex hal-02985536v1
The PhoP-PhoQ two-component regulatory system of Photorhabdus luminescens is essential for virulence in insects Sylviane Derzelle,Evelyne Turlin,Éric Duchaud,Sylvie Pages,Franck Kunstet al. Journal of Bacteriology, 2004, 186 (5), pp.1270-1279. ⟨10.1128/JB.186.5.1270-1279.2004⟩ Article dans une revue hal-02681185v1
Three different systems participate in l-Cystine uptake in Bacillus subtilis Pierre Burguière,Sandrine Auger,Marie-Françoise Hullo,Antoine Danchin,Isabelle Martin-Verstraete Journal of Bacteriology, 2004, 186 (15), pp.4875-4884. ⟨10.1128/JB.186.15.4875-4884.2004⟩ Article dans une revue hal-02889124v1
The metNPQ operon of Bacillus subtilis encodes an ABC permease transporting methionine sulfoxide, D-and L-methionine. Marie-Françoise Hullo,Sandrine Auger,Elie Dassa,Antoine Danchin,Isabelle Martin-Verstraete Research in Microbiology, 2004, 155 (2), pp.80-86. ⟨10.1016/j.resmic.2003.11.008⟩ Article dans une revue istex hal-00020363v1
Exploring the Penicillium marneffei genome Kwok-Yung Yuen,Géraldine Pascal,Samson Wong,Philippe Glaser,Patrick Wooet al. Archives of Microbiology, 2003, 179 (5), pp.339-353. ⟨10.1007/S00203-003-0533-8⟩ Article dans une revue istex hal-02985518v1
Identification of Bacillus subtilis CysL, a regulator of the cysJI Operon, which encodes sulfite reductase Isabelle Guillouard,Sandrine Auger,Marie-Françoise Hullo,Farid Chetouani,Antoine Danchinet al. Journal of Bacteriology, 2002, 184 (17), pp.4681-4689. ⟨10.1128/jb.184.17.4681-4689.2002⟩ Article dans une revue hal-02889129v1
The metIC operon involved in methionine biosynthesis in Bacillus subtilis is controlled by transcription antitermination Sandrine Auger,W. Yuen,Antoine Danchin,Isabelle Martin-Verstraete Microbiology, 2002, 148 (2), pp.507-518. ⟨10.1099/00221287-148-2-507⟩ Article dans une revue hal-02889132v1
Global Expression Profile of Bacillus subtilis Grown in the Presence of Sulfate or Methionine Sandrine Auger,Antoine Danchin,Isabelle Martin-Verstraete Journal of Bacteriology, 2002, 184 (18), pp.5179-5186. ⟨10.1128/jb.184.18.5179-5186.2002⟩ Article dans une revue hal-02889134v1
Sulfur-limitation-regulated proteins in Bacillus subtilis: a two-dimensional gel electrophoresis study Jean-Yves Coppée,Sandrine Auger,Evelyne Turlin,Agnieszka Sekowska,Jean-Pierre Le Caeret al. Microbiology, 2001, 147 (6), pp.1631-1640. ⟨10.1099/00221287-147-6-1631⟩ Article dans une revue hal-02889151v1

Rapport (1)

Avis du Comité Évaluation et science ouverte (CoÉSO) de l'Académie des sciences sur le score SIGAPS Alain Fischer,Patrick Couvreur,Pierre Corvol,Geneviève Almouzni,Jean-François Bachet al. Académie des sciences (France). 2023 Rapport hal-04672557v1

Pré-publication, Document de travail (1)

Biochemical and mathematical lessons from the evolution of the SARS- CoV-2 virus: paths for novel antiviral warfare Nicolas Cluzel,Amaury Lambert,Yvon Maday,Gabriel Turinici,Antoine Danchin 2020 Pré-publication, Document de travail hal-02987903v1

Autre publication scientifique (1)

Bacteria are not Lamarckian Antoine Danchin 2007 Autre publication scientifique hal-00130797v1

Chapitre d'ouvrage (1)

The SARS Case Study: An Alarm Clock? Gabriel Turinici,Antoine Danchin M. Tibayrenc. Encyclopedia of Infectious Diseases: Modern Methodologies, John Wiley & Sons, Inc., Hoboken, NJ, USA., pp.151-162, 2006, ⟨10.1002/9780470114209.ch9⟩ Chapitre d'ouvrage hal-00536581v1