Adrien Castinel

Publications

Article dans une revue (12)

A Continuum of Pre‐Activated, Early, Coordinated and Multilayered Transcriptional Defence Responses Underpins Enhanced Resistance to Fusarium oxysporum in Vanilla planifolia Quentin da Silva,Alexandre Soriano,Thalia‐aimée Budel Andoche,Adrien Castinel,Katia Jadeet al. Plant Pathology, 2026, 75 (2), pp.e70152. ⟨10.1111/ppa.70152⟩ Article dans une revue hal-05565730v1
The Diversity of Oligosaccharide Composition in Rabbit Milk and Its Association with the Development of the Cecal Microbiota and the Survival of Young Rabbits Sylvie Combes,Christelle Knudsen,Mathilde Rumeau,Géraldine Pascal,Laurent Cauquilet al. Journal of Nutrition, 2025, 155 (12), pp.4222-4238. ⟨10.1016/j.tjnut.2025.10.013⟩ Article dans une revue hal-05403529v1
Unravelling Wood Extractive Resistance in Phanerochaete chrysosporium Through Random Mutagenesis Delphine Noel,Duy Vuong Nguyen,Marie‐laure Ancel,Emilie Rezer,Adrien Castinelet al. Environmental Microbiology, 2025, 27 (12), pp.21000-21008. ⟨10.1111/1462-2920.70205⟩ Article dans une revue hal-05459218v1
A Bos taurus sequencing methods benchmark for assembly, haplotyping, and variant calling Camille Eché,Carole Iampietro,Clément Birbes,Andreea Dréau,Claire Kuchlyet al. Scientific Data , 2023, 10 (1), pp.369. ⟨10.1038/s41597-023-02249-1⟩ Article dans une revue (data paper) hal-04122201v1
Genome structures resolve the early diversification of teleost fishes Elise Parey,Alexandra Louis,Jérôme Montfort,Olivier Bouchez,Céline Roqueset al. Science, 2023, 379 (6632), pp.572-575. ⟨10.1101/2022.04.07.487469⟩ Article dans une revue hal-03765882v1
Early Introduction of Plant Polysaccharides Drives the Establishment of Rabbit Gut Bacterial Ecosystems and the Acquisition of Microbial Functions Charlotte Paës,Thierry Gidenne,Karine Bébin,Joël Duperray,Charly Gohieret al. mSystems, 2022, 18 p. ⟨10.1128/msystems.00243-22⟩ Article dans une revue hal-03699002v1
An ancient truncated duplication of the anti‐Müllerian hormone receptor type 2 gene is a potential conserved master sex determinant in the Pangasiidae catfish family Ming Wen,Qiaowei Pan,Elodie Jouanno,Jérôme Montfort,Margot Zahmet al. Molecular Ecology Resources, 2022, 22 (6), pp.2411-2428. ⟨10.1111/1755-0998.13620⟩ Article dans une revue hal-03652234v1
A carvacrol‐based product reduces Campylobacter jejuni load and alters microbiota composition in the caeca of chickens Marion Allaoua,Elsa Bonnafé,Pierre Etienne,Virginie Noirot,Jean‐françois Gabarrouet al. Journal of Applied Microbiology, 2022, 132 (6), pp.4501-4516. ⟨10.1111/jam.15521⟩ Article dans une revue hal-03607325v1
A supernumerary “B-sex” chromosome drives male sex determination in the Pachón cavefish, Astyanax mexicanus Boudjema Imarazene,Kang Du,Séverine Beille,Elodie Jouanno,Romain Feronet al. Current Biology, 2021, 31 (21), pp.4800-4809.e9. ⟨10.1016/j.cub.2021.08.030⟩ Article dans une revue hal-03337251v1
Transport to the Slaughterhouse Affects the Salmonella Shedding and Modifies the Fecal Microbiota of Finishing Pigs Francesca Romana Massacci,Alessandra Morelli,Lucilla Cucco,Adrien Castinel,Roberta Ortenziet al. Animals, 2020, 10 (4), pp.676. ⟨10.3390/ani10040676⟩ Article dans une revue hal-02964221v1
A tunable filter for high molecular weight DNA selection and linked-read sequencing Nicolas Milon,Juan-Luis Fuentes Rojas,Adrien Castinel,Laurent Bigot,Géraud Bouwmanset al. Lab on a Chip, 2020, 20 (1), pp.175-184. ⟨10.1039/C9LC00965E⟩ Article dans une revue hal-02400601v1
Host genotype and amoxicillin administration affect the incidence of diarrhoea and faecal microbiota of weaned piglets during a natural multiresistant ETEC infection Francesca Massacci,Silvia Tofani,Claudio Forte,Micol Bertocchi,Carmela Lovitoet al. Journal of Animal Breeding and Genetics, 2019, ⟨10.1111/jbg.12432⟩ Article dans une revue hal-02618422v1

Communication dans un congrès (5)

Limites et avantages du séquençage métabarcoding long-reads ? Géraldine Pascal,Jean Mainguy,Maelle Pomies,Adrien Castinel,Sylvie Combeset al. FROGSDays 2025, INRAE, Dec 2025, Castanet Tolosan, France Communication dans un congrès hal-05492424v1
Improvement of the Bos taurus Genome Assembly using New Sequencing Technologies Camille Eché,Carole Iampietro,Clement Birbes,Andreea Dreau,Claire Kuchlyet al. Discoveries Roadshow 2023 - PacBio, PacBio, May 2023, Paris, France Communication dans un congrès hal-04096124v1
The benefits of long read HiFi sequencing for metagenomic analysis Adrien Castinel,Jean Mainguy,Sylvie Combes,Carole Iampietro,Christine Gaspinet al. France génomique - VIIème Animation Wetlab et Bioinfo, Nov 2022, Strasbourg, France Communication dans un congrès hal-03896074v1
The benefits of long read HiFi sequencing for metabarcoding analysis Adrien Castinel,Jean Mainguy,Sylvie Combes,Carole Iampietro,Christine Gaspinet al. PACBIO DISCOVERIES ROADSHOW PARIS, PACBIO, May 2022, Paris, France Communication dans un congrès hal-03740586v1
metagWGS : a workflow to analyse short or long HiFi metagenomic reads Joanna Fourquet,Maïna Vienne,Jean Mainguy,Vincent Darbot,Pierre Martinet al. Bioinfo Biosta Genotoul day, Dec 2022, Castanet-Tolosan, France Communication dans un congrès hal-03944382v1

Poster de conférence (10)

Volume reduction and automation of DNAprep libraries for low pass sequencing Marcuzzo Camille,Cervin Guyomar,Amandine Suin,Adrien Castinel,Carole Iampietroet al. Assemblée générale France Génomique, Jun 2023, Paris, France Poster de conférence hal-04590691v1
metagWGS: a workflow to analyse short and long HiFi metagenomic reads Joanna Fourquet,Maïna Vienne,Jean Mainguy,Vincent Darbot,Pierre Martinet al. ECCB2022, Sep 2022, Sitges, Spain Poster de conférence hal-03788263v1
Implementation of new methods for metagenomics analysis using PacBio HiFi sequencing Adrien Castinel,Jean Mainguy,Sylvie Combes,Carole Iampietro,Christine Gaspinet al. Plant & Animal Genome Conference (PAG) 2022, Jan 2022, San Diego, United States Poster de conférence hal-03541346v1
metagWGS: a workflow to analyse short and long HiFi metagenomic reads Taxonomic profile HiFi vs Short reads assembly Joanna Fourquet,Jean Mainguy,Maïna Vienne,Céline Noirot,Pierre Martinet al. JOBIM 2022, Jul 2022, Rennes, France. Actes des exposés (keynotes, contributions orales, mini-symposia) : JOBIM2022_proceedings_oral.pdf (23 Mo) et actes des posters et démos : JOBIM2022_proceedings_posters_demos.pdf (19 Mo). ⟨10.15454/1.5572369328961167E12⟩ Poster de conférence hal-03771202v1
Strengths and limits of long read metabarcoding Jean Mainguy,Adrien Castinel,Olivier Bouchez,Sylvie Combes,Carole Iampietroet al. ECCB 2022, Sep 2022, Meliá Sitges, Spain Poster de conférence hal-03848228v1
Avancées réalisées en métabarcoding et en métagénomique dans le cadre du projet SeqOccIn grâce au séquençage longs fragments Denis Milan,Jean Mainguy,Adrien Castinel,Olivier Bouchez,Sylvie Combeset al. Colloque INRAE Genomics 2022, May 2022, Orléans, France. , 2022 Poster de conférence hal-03776011v1
Benefits of PacBio HiFi long reads for metagenomic whole genome analysis Adrien Castinel,Jean Mainguy,Olivier Bouchez,Sylvie Combes,Carole Iampietroet al. Environmental And Agronomical Genomics Symposium, Oct 2021, Tours, France Poster de conférence hal-03538657v1
Improving microbial taxonomic profiling with long read technologies Jean Mainguy,Adrien Castinel,Olivier Bouchez,Sylvie Combes,Carole Iampietroet al. JOBIM2020, Jun 2020, Online, France Poster de conférence hal-03177058v1
A Long Read project to find optimal technologic combinations for genome assembly and variability, epigenetic marks detection and metagenomic analysis Carole Iampietro,Camille Eché,Adrien Castinel,Rémy-Félix Serre,Christophe Kloppet al. PAG XXVIII, Plant and Animal Genome, Jan 2020, San Diego, United States. 2020 Poster de conférence hal-02947690v1
Identification of genomic regions for high-resolution taxonomic profiling using long-read sequencing technology Jean Mainguy,Olivier Bouchez,Adrien Castinel,Sylvie Combes,Christine Gaspinet al. JOBIM : Journées Ouvertes Biologie Informatique Mathématiques, Jul 2019, Nantes, France. , 2019 Poster de conférence hal-02791605v1