|
Proficiency testing and cross-laboratory method comparison to support standardisation of diatom DNA metabarcoding for freshwater biomonitoring
Valentin Vasselon
,
Sinziana Rivera
,
Éva Ács
,
Salomé Baja Almeida
,
Karl Andree
et al.
Article dans une revue
hal-04930501
v1
|
|
eDNA metabarcoding from aquatic biofilms allows studying spatial and temporal fluctuations of fish communities from Lake Geneva
Sinziana F Rivera
,
Valentin Vasselon
,
Agnès Bouchez
,
Frédéric Rimet
Article dans une revue
hal-04213758
v1
|
|
Diatom endemism and taxonomic turnover: Assessment in high-altitude alpine lakes covering a large geographical range
Frédéric Rimet
,
Eveline Pinseel
,
Agnes Bouchez
,
Bella Japoshvili
,
Levan Mumladze
Article dans une revue
hal-04247525
v1
|
|
Environmental filtering and mass effect are two important processes driving lake benthic diatoms: Results of a DNA metabarcoding study in a large lake
Frédéric Rimet
,
Alexis Canino
,
Teofana Chonova
,
Julie Guéguen
,
Agnes Bouchez
Article dans une revue
hal-03881952
v1
|
|
Evidence of Bacterial Community Coalescence between Freshwater and Discharged tpm-Harboring Bacterial Taxa from Hospital and Domestic Wastewater Treatment Plants among Epilithic Biofilms
Rayan Bouchali
,
Laurence Marjolet
,
Leslie Mondamert
,
Teofana Chonova
,
Sébastien Ribun
et al.
Article dans une revue
hal-04154873
v1
|
|
Which barcode to decipher freshwater microalgal assemblages? Tests on mock communities
Alexis Canino
,
Clarisse Lemonnier
,
Benjamin Alric
,
Agnes Bouchez
,
Isabelle Domaizon
et al.
Article dans une revue
hal-04210529
v1
|
|
A strategy for successful integration of DNA-based methods in aquatic monitoring
Philippe Blancher
,
Estelle Lefrançois
,
Frédéric Rimet
,
Valentin Vasselon
,
Christine Argillier
et al.
Article dans une revue
hal-03976834
v1
|
|
Environmental DNA metabarcoding for benthic monitoring: A review of sediment sampling and DNA extraction methods
J. Pawlowski
,
K. Bruce
,
K. Panksep
,
F.I. Aguirre
,
S. Amalfitano
et al.
Article dans une revue
hal-03977006
v1
|
|
A strategy for successful integration of DNA-based methods in aquatic monitoring
Philippe Blancher
,
Estelle Lefrançois
,
Frédéric Rimet
,
Valentin Vasselon
,
Christine Argillier
et al.
Article dans une revue
hal-04952660
v1
|
|
Recommendations for the preservation of environmental samples in diatom metabarcoding studies
Ana Baricevic
,
Cécile Chardon
,
Maria Kahlert
,
Satu Maaria Karjalainen
,
Daniela Maric Pfannkuchen
et al.
Article dans une revue
hal-03976810
v1
|
|
Passive sampling of environmental DNA in aquatic environments using 3D‐printed hydroxyapatite samplers
Héloïse Verdier
,
Lara Konecny‐dupre
,
Christophe Marquette
,
Helen Reveron
,
Solène Tadier
et al.
Article dans une revue
hal-03601922
v1
|
|
SIPIBEL observatory: Data on usual pollutants (solids, organic matter, nutrients, ions) and micropollutants (pharmaceuticals, surfactants, metals), biological and ecotoxicity indicators in hospital and urban wastewater, in treated effluent and sludge from wastewater treatment plant, and in surface and groundwater
Jean-Luc Bertrand-Krajewski
,
Rémy Bournique
,
Vivien Lecomte
,
Noémie Pernin
,
Laure Wiest
et al.
Article dans une revue
(data paper)
hal-03511662
v1
|
|
Metadata standards and practical guidelines for specimen and DNA curation when building barcode reference libraries for aquatic life
Frédéric Rimet
,
Eva Aylagas
,
Ángel Borja
,
Agnes Bouchez
,
Alexis Canino
et al.
Article dans une revue
pasteur-03159791
v1
|
|
Fish eDNA metabarcoding from aquatic biofilm samples: Methodological aspects
Sinziana Rivera
,
Frédéric Rimet
,
Valentin Vasselon
,
Marine Vautier
,
Isabelle Domaizon
et al.
Article dans une revue
hal-03510613
v1
|
|
Monitoring the ecological status of rivers with diatom eDNA metabarcoding: a comparison of taxonomic markers and analytical approaches for the inference of a molecular diatom index
Laure Apothéloz‐perret‐gentil
,
Agnes Bouchez
,
Tristan Cordier
,
Arielle Cordonier
,
Julie Guéguen
et al.
Article dans une revue
hal-02955898
v1
|
|
How can integrated morphotaxonomy- and metabarcoding-based diatom assemblage analyses best contribute to the ecological assessment of streams?
Panayiota Pissaridou
,
Marco Cantonati
,
Agnes Bouchez
,
Iakovos Tziortzis
,
Gerald Dörflinger
et al.
Article dans une revue
hal-03528828
v1
|
|
Expanding ecological assessment by integrating microorganisms into routine freshwater biomonitoring
M. Sagova-Mareckova
,
J. Boenigk
,
Agnes Bouchez
,
K. Cermakova
,
T. Chonova
et al.
Article dans une revue
(article de synthèse)
hal-03487093
v1
|
|
Phytool, a ShinyApp to homogenise taxonomy of freshwater microalgae from DNA barcodes and microscopic observations
Alexis Canino
,
Agnes Bouchez
,
Christophe Laplace-Treyture
,
Isabelle Domaizon
,
Frédéric Rimet
Article dans une revue
hal-03484541
v1
|
|
Herbicide-Induced Shifts in the Periphyton Community Composition Indirectly Affect Feeding Activity and Physiology of the Gastropod Grazer Physella acuta
Marco Konschak
,
Jochen Zubrod
,
Tomás Duque Acosta
,
Agnes Bouchez
,
Alexandra Kroll
et al.
Article dans une revue
hal-03510646
v1
|
|
Cyprus’ diatom diversity and the association of environmental and anthropogenic influences for ecological assessment of rivers using DNA metabarcoding
Panayiota Pissaridou
,
Valentin Vasselon
,
Andreas Christou
,
Teofana Chonova
,
Athina Papatheodoulou
et al.
Article dans une revue
hal-03303887
v1
|
|
Exploring the capacity of aquatic biofilms to act as environmental DNA samplers: Test on macroinvertebrate communities in rivers
Sinziana Rivera
,
Valentin Vasselon
,
Nathalie Mary
,
Olivier Monnier
,
Fréderic Rimet
et al.
Article dans une revue
hal-03103971
v1
|
|
The potential of exact sequence variants (ESVs) to interpret and assess the impact of agricultural pressure on stream diatom assemblages revealed by DNA metabarcoding
Kálmán Tapolczai
,
Géza Selmeczy
,
Beáta Szabó
,
Viktória B-Béres
,
François Keck
et al.
Article dans une revue
hal-03238653
v1
|
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Unlocking our understanding of intermittent rivers and ephemeral streams with genomic tools
Rosetta C Blackman
,
Florian Altermatt
,
Arnaud Foulquier
,
Tristan Lefébure
,
Maïlys Gauthier
et al.
Article dans une revue
(article de synthèse)
hal-03369170
v1
|
|
A pilot experiment to assess the efficiency of pharmaceutical plant wastewater treatment and the decreasing effluent toxicity to periphytic biofilms
Vincent Tardy
,
Chloé Bonnineau
,
Agnes Bouchez
,
Cécile Miège
,
Matthieu Masson
et al.
Article dans une revue
hal-03238813
v1
|
|
Ecosystems monitoring powered by environmental genomics: a review of current strategies with an implementation roadmap
Tristan Cordier
,
Laura Alonso‐sáez
,
Laure Apothéloz‐perret‐gentil
,
Eva Aylagas
,
David Bohan
et al.
Article dans une revue
(article de synthèse)
hal-02860583
v1
|
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Benthic diatom community dynamics in Mediterranean intermittent streams: Effects of water availability and their potential as indicators of dry-phase ecological status
Maria Helena Novais
,
Eduardo F Morales
,
Alexandra Marchã Penha
,
Miguel Potes
,
Agnes Bouchez
et al.
Article dans une revue
hal-02520259
v1
|
|
The vertical distribution of tetA and intI1 in a deep lake is rather due to sedimentation than to resuspension
Andrea Di cesare
,
Ester Eckert
,
Camille Cottin
,
Agnes Bouchez
,
Cristiana Callieri
et al.
Article dans une revue
hal-02569099
v1
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Evaluation and sensitivity analysis of diatom DNA metabarcoding for WFD bioassessment of Mediterranean rivers
Javier Pérez-Burillo
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Rosa Trobajo
,
Valentin Vasselon
,
Frédéric Rimet
,
Agnes Bouchez
et al.
Article dans une revue
hal-02557859
v1
|
|
Diatom metabarcoding applied to large scale monitoring networks: Optimization of bioinformatics strategies using Mothur software
Sinziana Rivera
,
Valentin Vasselon
,
Agnes Bouchez
,
Frédéric Rimet
Article dans une revue
hal-02518194
v1
|
|
A taxonomy-free approach based on machine learning to assess the quality of rivers with diatoms
Maria João Feio
,
Sonia R.Q. Serra
,
Andreia Mortágua
,
Agnes Bouchez
,
Frédéric Rimet
et al.
Article dans une revue
hal-02520169
v1
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Key questions for next-generation biomonitoring
Andreas Makiola
,
Zacchaeus G. Compson
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Donald J Baird
,
Matthew A. Barnes
,
Sam Philip Boerlijst
et al.
Article dans une revue
(article de synthèse)
hal-02402296
v1
|
|
Environmental filtering and limiting similarity as main forces driving diatom community structure in Mediterranean and continental temporary and perennial streams
Gábor Várbíró
,
Gabor Borics
,
Maria Helena Novais
,
Maria Manuela Morais
,
Frédéric Rimet
et al.
Article dans une revue
hal-02901285
v1
|
|
Applicability of DNA metabarcoding approach in the bioassessment of Portuguese rivers using diatoms
Andreia Mortágua
,
Valentin Vasselon
,
Ricardo Oliveira
,
Carmen Elias
,
Cécile Chardon
et al.
Article dans une revue
hal-02623986
v1
|
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Recommandations d'un collectif franco-suisse d'experts pour une meilleure évaluation de la qualité écotoxicologique des sédiments par l'étude des communautés benthiques
Stéphane Pesce
,
J.D. Ferrari
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C. Bonnineau
,
C. Casado
,
L. Apotheloz Perret Gentil
et al.
Article dans une revue
hal-02609267
v1
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|
Benthic Diatom Communities in an Alpine River Impacted by Waste Water Treatment Effluents as Revealed Using DNA Metabarcoding
Teofana Chonova
,
Rainer Kurmayer
,
Frédéric Rimet
,
Jérôme Labanowski
,
Valentin Vasselon
et al.
Article dans une revue
hal-02381793
v1
|
|
Diat.barcode, an open-access curated barcode library for diatoms
Frédéric Rimet
,
Evgenuy Gusev
,
Maria Kahlert
,
Martyn G. Kelly
,
Maxim Kulikovskiy
et al.
Article dans une revue
hal-02619171
v1
|
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Diatom DNA metabarcoding for biomonitoring: strategies to avoid major taxonomical and bioinformatical biases Llmiting molecular indices capacities
Kálmán Tapolczai
,
François Keck
,
Agnes Bouchez
,
Frédéric Rimet
,
Maria Kahlert
et al.
Article dans une revue
hal-02624302
v1
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A comparison of biotic groups as dry-phase indicators of ecological quality in intermittent rivers and ephemeral streams
R. Stubbington
,
A. Paillex
,
J. England
,
A. Barthes
,
Agnes Bouchez
et al.
Article dans une revue
hal-02608198
v1
|
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Autumn drought drives functional diversity of benthic diatom assemblages of continental intermittent streams
Viktória B-Béres
,
Béla Tóthmérész
,
István Bácsi
,
Gabor Borics
,
András Abonyi
et al.
Article dans une revue
hal-02619814
v1
|
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Connecting the morphological and molecular species concepts to facilitate species identification within the genus Fragilaria (Bacillariophyta)
Maria Kahlert
,
Martyn G. Kelly
,
David G. Mann
,
Frédéric Rimet
,
Shinya Sato
et al.
Article dans une revue
hal-02628803
v1
|
|
Molecular versus morphological data for benthic diatoms biomonitoring in Northern Europe freshwater and consequences for ecological status
Bonnie Bailet
,
Agnes Bouchez
,
Alain Franc
,
Jean-Marc Frigerio
,
François Keck
et al.
Article dans une revue
hal-02432989
v1
|
|
DNA barcode reference libraries for the monitoring of aquatic biota in Europe: Gap-analysis and recommendations for future work
Hannah Weigand
,
Arne J. Beermann
,
Filipe O. Costa
,
Zoltán Csabai
,
Sofia Duarte
et al.
Article dans une revue
(article de synthèse)
hal-02626077
v1
|
|
Assessing pollution of aquatic environments with diatoms' DNA metabarcoding: experience and developments from France Water Framework Directive networks
Valentin Vasselon
,
Frédéric Rimet
,
Isabelle Domaizon
,
Olivier Monnier
,
Yorick Reyjol
et al.
Article dans une revue
hal-03148548
v1
|
|
The impact of OTU sequence similarity threshold on diatom-based bioassessment: A case study of the rivers of Mayotte (France, Indian Ocean)
Kalman Tapolczai
,
Valentin Vasselon
,
Agnes Bouchez
,
Csilla Stenger-Kovács
,
Judit Padisák
et al.
Article dans une revue
hal-02619428
v1
|
|
Factors influencing the heterogeneity of benthic diatom communities along the shoreline of natural alpine lakes
Frédéric Rimet
,
Léa Féret
,
Agnes Bouchez
,
Jean Marcel Dorioz
,
Etienne Dambrine
Article dans une revue
hal-02618767
v1
|
|
Development and implementation of eco-genomic tools for aquatic ecosystem biomonitoring: the SYNAQUA French-Swiss program
Estelle Lefrancois
,
Laure Apothéloz-Perret-Gentil
,
Philippe Blancher
,
Samuel Botreau
,
Cécile Chardon
et al.
Article dans une revue
hal-02916342
v1
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Implementation options for DNA-based identification into ecological status assessment under the european water framework directive
Daniel Hering
,
Angel Borja
,
J.Iwan Jones
,
Didier Pont
,
Pieter Boets
et al.
Article dans une revue
(article de synthèse)
hal-02626478
v1
|
|
SIPIBEL : un site pilote pour l’étude des effluents hospitaliers et urbains. Les grands enseignements après cinq ans de suivi et de recherche
Vivien Lecomte
,
Jean-Luc Bertrand-Krajewski
,
Agnes Bouchez
,
Benoit Cournoyer
,
Christophe Dagot
et al.
Article dans une revue
hal-01825316
v1
|
|
Sensitivities of seven algal species to triclosan, fluoxetine and their mixtures
Ran Bi
,
Xiangfeng Zeng
,
Lei Mu
,
Liping Hou
,
Wenhua Liu
et al.
Article dans une revue
hal-02621712
v1
|
|
Do we similarly assess diversity with microscopy and high-throughput sequencing? Case of microalgae in lakes
Frédéric Rimet
,
Valentin Vasselon
,
Barbara A.-Keszte
,
Agnes Bouchez
Article dans une revue
hal-02625205
v1
|
|
Metabarcoding of lake benthic diatoms: from structure assemblages to ecological assessment
S. F. Rivera
,
Valentin Vasselon
,
Stéphan Jacquet
,
Agnes Bouchez
,
D. Ariztegui
et al.
Article dans une revue
hal-02621047
v1
|
|
Boosting DNA metabarcoding for biomonitoring with phylogenetic estimation of OTUs' ecological profiles
F Keck
,
Valentin Vasselon
,
Frédéric Rimet
,
Agnes Bouchez
,
M Kahlert
Article dans une revue
hal-02625977
v1
|
|
DNA metabarcoding and microscopic analyses of sea turtles biofilms: Complementary to understand turtle behavior
Sinziana Rivera
,
Valentin Vasselon
,
Katia Ballorain
,
Alice Carpentier
,
Carlos E. Wetzel
et al.
Article dans une revue
hal-02624564
v1
|
|
Sensitive vs. tolerant Nitzschia palea (Kützing) W. Smith strains to atrazine: a biochemical perspective
S M Esteves
,
S F P Almeida
,
S Gonçalves
,
Frédéric Rimet
,
Agnes Bouchez
et al.
Article dans une revue
hal-02623950
v1
|
|
The SIPIBEL project: treatment of hospital and urban wastewater in a conventional urban wastewater treatment plant.
Teofana Chonova
,
Vivien Lecomte
,
Jean-Luc Bertrand-Krajewski
,
Agnes Bouchez
,
Jérôme Labanowski
et al.
Article dans une revue
hal-01606931
v1
|
|
The potential of High-Throughput Sequencing (HTS) of natural samples as a source of primary taxonomic information for reference libraries of diatom barcodes
Frédéric Rimet
,
Nelida Abarca
,
Agnes Bouchez
,
Wolf-Henning Kusber
,
Regine Jahn
et al.
Article dans une revue
hal-02624468
v1
|
|
ECOTOX, new questions for terrestrial and aquatic ecotoxicology
Christian Mougin
,
Agnes Bouchez
,
Laurence Denaix
,
Jeanne Garric
,
Fabrice Martin-Laurent
Article dans une revue
hal-01878281
v1
|
|
River biofilm community changes related to pharmaceutical loads emitted by a wastewater treatment plant
Teofana Chonova
,
Jérôme Labanowski
,
Benoit Cournoyer
,
Cècile Chardon
,
François Keck
et al.
Article dans une revue
hal-01859406
v1
|
|
The future of biotic indices in the ecogenomic era: Integrating (e)DNA metabarcoding in biological assessment of aquatic ecosystems
Jan Pawlowski
,
Mary Kelly-Quinn
,
Florian Altermatt
,
Laure Apothéloz-Perret-Gentil
,
Pedro Beja
et al.
Article dans une revue
(article de synthèse)
hal-02629210
v1
|
|
Assessing ecological status with diatoms DNA metabarcoding: Scaling-up on a WFD monitoring network (Mayotte island, France)
Valentin Vasselon
,
Frédéric Rimet
,
Kalman Tapolczai
,
Agnes Bouchez
Article dans une revue
hal-02622658
v1
|
|
Taxonomy- or trait-based ecological assessment for tropical rivers? Case study on benthic diatoms in Mayotte island (France, Indian Ocean)
Kalman Tapolczai
,
Agnes Bouchez
,
Csilla Stenger-Kovács
,
Judit Padisák
,
Frédéric Rimet
Article dans une revue
hal-01604595
v1
|
|
Spatio-Temporal Variations of Marine Biofilm Communities Colonizing Artificial Substrata Including Antifouling Coatings in Contrasted French Coastal Environments
Jean-François Briand
,
Aude Barani
,
Cédric Garnier
,
Karine Rehel
,
Félix Urvois
et al.
Article dans une revue
hal-01599314
v1
|
|
Can we predict diatoms herbicide sensitivities with phylogeny? Influence of intraspecific and interspecific variability
Sara Esteves
,
Francois Keck
,
Salome Almeida
,
Etelvina Lourenço Figueira
,
Agnes Bouchez
et al.
Article dans une revue
hal-01604474
v1
|
|
Application of high-throughput sequencing (HTS) metabarcoding to diatom biomonitoring: Do DNA extraction methods matter?
Valentin Vasselon
,
Isabelle Domaizon
,
Frédéric Rimet
,
Maria Kahlert
,
Agnes Bouchez
Article dans une revue
hal-01606868
v1
|
|
Avoiding quantification bias in metabarcoding: Application of a cell biovolume correction factor in diatom molecular biomonitoring
Valentin Vasselon
,
Agnes Bouchez
,
Frédéric Rimet
,
Stéphan Jacquet
,
Rosa Trobajo
et al.
Article dans une revue
hal-02916343
v1
|
|
Benthic diatom communities in high altitude lakes: a large scale study in the French Alps
Léa Féret
,
Agnes Bouchez
,
Frédéric Rimet
Article dans une revue
hal-02619291
v1
|
|
Freshwater biomonitoring in the Information age
Francois Keck
,
Valentin Vasselon
,
Kalman Tapolczai
,
Frédéric Rimet
,
Agnes Bouchez
Article dans une revue
hal-01604509
v1
|
|
Linking phylogenetic similarity and pollution sensitivity to develop ecological assessment methods: a test with river diatoms
François Keck
,
Agnes Bouchez
,
Alain Franc
,
Frédéric Rimet
Article dans une revue
hal-01426853
v1
|
|
Comparison of specific versus literature species sensitivity distributions for herbicides risk assessment
Floriane Larras
,
Vincent Gregorio
,
Agnes Bouchez
,
Bernard Montuelle
,
Nathalie Chèvre
Article dans une revue
hal-02637650
v1
|
|
Pollution-induced community tolerance (PICT) as a tool for monitoring Lake Geneva long-term in situ ecotoxic restoration from herbicide contamination
Floriane Larras
,
Frédéric Rimet
,
V. Gregorio
,
Annette A. Berard
,
C. Leboulanger
et al.
Article dans une revue
hal-01293534
v1
|
|
Trait-based ecological classifications for benthic algae: review and perspectives
Kálmán Tapolczai
,
Agnes Bouchez
,
Csilla Stenger-Kovács
,
Judit Padisák
,
Frédéric Rimet
Article dans une revue
(article de synthèse)
hal-02631412
v1
|
|
R-Syst::diatom: an open-access and curated barcode database for diatoms and freshwater monitoring
Frédéric Rimet
,
Philippe Chaumeil
,
François Keck
,
Lenaïg Kermarrec
,
Valentin Vasselon
et al.
Article dans une revue
hal-01426772
v1
|
|
Phylogenetic signal in diatom ecology: perspectives for aquatic ecosystems biomonitoring
François Keck
,
Frédéric Rimet
,
Alain Franc
,
Agnes Bouchez
Article dans une revue
hal-01426854
v1
|
|
Pollution-induced community tolerance (PICT): towards an ecologically relevant risk assessment of chemicals in aquatic systems
Ahmed Tlili
,
Annette Berard
,
Hans Blanck
,
Agnes Bouchez
,
Fernanda Cassio
et al.
Article dans une revue
hal-01473127
v1
|
|
Spatial heterogeneity of littoral benthic diatoms in a large lake: monitoring implications
Frédéric Rimet
,
Agnes Bouchez
,
Kálmán Tapolczai
Article dans une revue
hal-02634391
v1
|
|
Rejets d'effluents hospitaliers : évaluation de la persistance environnementale des médicaments et des bactéries pathogènes: La démarche du projet Persist-Env
J. Labanowski
,
E. Laurent
,
T. Chonova
,
Agnes Bouchez
,
B. Cournoyer
et al.
Article dans une revue
hal-02466014
v1
|
|
phylosignal: an R package to measure, test, and explore the phylogenetic signal
François Keck
,
Frédéric Rimet
,
Agnes Bouchez
,
Alain Franc
Article dans une revue
hal-01426773
v1
|
|
Separate treatment of hospital and urban wastewaters: A real scale comparison of effluents and their effect on microbial communities
Teofana Chonova
,
François Keck
,
Jérôme Labanowski
,
Bernard Montuelle
,
Frédéric Rimet
et al.
Article dans une revue
hal-01445038
v1
|
|
ECOTOX, the INRA’s network of ecotoxicologists, a major structure involved for the coordination and structuring of the French research in ecotoxicology
Christian Mougin
,
Agnes Bouchez
,
Laurence Denaix
,
Francois Laurent
,
Fabrice Martin-Laurent
Article dans une revue
hal-02634692
v1
|
|
Report on the fifth meeting of INRA’s national network of ecotoxicologists, ECOTOX
Christian Mougin
,
Agnes Bouchez
,
Laurence Denaix
,
Isabelle Lamy
,
Francois Laurent
et al.
Article dans une revue
hal-01512225
v1
|
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Benthic diatoms and phytoplankton to assess nutrients in a large lake: Complementarity of their use in Lake Geneva (France–Switzerland)
Frédéric Rimet
,
Agnes Bouchez
,
Bernard Montuelle
Article dans une revue
hal-02636810
v1
|
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Antifouling Coatings Influence both Abundance and Community Structure of Colonizing Biofilms: a Case Study in the Northwestern Mediterranean Sea
Mercedes Camps
,
Aude Barani
,
Gérald Grégori
,
Agnes Bouchez
,
Brigitte Le Berre
et al.
Article dans une revue
hal-03183971
v1
|
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Comparative sensitivity to the fungicide tebuconazole of biofilm and plankton microbial communities in freshwater ecosystems
Joan Artigas
,
N. Pascault
,
Agnes Bouchez
,
J. Chastaine
,
D. Debroas
et al.
Article dans une revue
hal-00995683
v2
|
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A next-generation sequencing approach to river biomonitoring using benthic diatoms
Lenaïg Kermarrec
,
Alain Franc
,
Frédéric Rimet
,
Philippe Chaumeil
,
Jean-Marc Frigerio
et al.
Article dans une revue
hal-02632667
v1
|
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Seasonal shift in the sensitivity of a natural benthic microalgal community to a herbicide mixture: impact on the protective level of thresholds derived from species sensitivity distributions
Floriane Larras
,
Bernard Montuelle
,
Frédéric Rimet
,
Nathalie Chèvre
,
Agnes Bouchez
Article dans une revue
hal-02636768
v1
|
|
When is sampling complete? The effects of geographical range and marker choice on perceived diversity in Nitzschia palea (Bacillariophyta)
Frédéric Rimet
,
Rosa Trobajo
,
David.G. Mann
,
Lenaïg Kermarrec
,
Alain Franc
et al.
Article dans une revue
hal-02640347
v1
|
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Linking diatom sensitivity to herbicides to phylogeny: a step forward for biomonitoring?
Floriane Larras
,
Francois Keck
,
Bernard Montuelle
,
Frédéric Rimet
,
Agnes Bouchez
Article dans une revue
hal-02636747
v1
|
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A high-throughput sequencing ecotoxicology study of freshwater bacterial communities and their responses to tebuconazole
Noémie Pascault
,
Simon Roux
,
Joan Artigas
,
Stéphane Pesce
,
Julie Leloup
et al.
Article dans une revue
hal-01110178
v1
|
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Next-generation sequencing to inventory taxonomic diversity in eukaryotic communities: a test for freshwater diatoms
Lenaïg Kermarrec
,
Alain Franc
,
Frédéric Rimet
,
Philippe Chaumeil
,
Jean-François Humbert
et al.
Molecular Ecology Resources, 2013, 13, pp.607-619
Article dans une revue
bioemco-00840234
v1
|
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Assessment of toxicity thresholds in aquatic environments: Does benthic growth of diatoms affect their exposure and sensitivity to herbicides?
Floriane Larras
,
Bernard Montuelle
,
Agnes Bouchez
Article dans une revue
istex
hal-02652453
v1
|
|
First Evidence of the Existence of Semi-Cryptic Species and of a Phylogeographic Structure in the Gomphonema parvulum (Kutzing) Kutzing Complex (Bacillariophyta)
Lenaïg Kermarrec
,
Agnes Bouchez
,
Frédéric Rimet
,
Jean Francois Humbert
Article dans une revue
istex
hal-02645491
v1
|
|
Next-generation sequencing to inventory taxonomic diversity in eukaryotic communities: a test for freshwater diatoms
Lenaïg Kermarrec
,
Alain Franc
,
Frédéric Rimet
,
Philippe Chaumeil
,
Jean Francois Humbert
et al.
Article dans une revue
istex
hal-02644189
v1
|
|
The effect of temperature and a herbicide mixture on freshwater periphytic algae
Floriane Larras
,
A.S. Lambert
,
Stéphane Pesce
,
Frédéric Rimet
,
Agnes Bouchez
et al.
Article dans une revue
hal-02599031
v1
|
|
Mangrove microbial diversity and the impact of trophic contamination
Agnes Bouchez
,
Noémie Pascault
,
Cècile Chardon
,
Marc Bouvy
,
Philippe Cecchi
et al.
Article dans une revue
hal-00956925
v1
|
|
Influence of herbicide contamination on diversity and ecological guilds of river diatoms
Rémy Marcel
,
Agnes Bouchez
,
Frédéric Rimet
Article dans une revue
hal-02644367
v1
|
|
Using bioassays and species sensitivity distributions to assess herbicide toxicity towards benthic diatoms
Floriane Larras
,
Agnes Bouchez
,
Frédéric Rimet
,
Bernard Montuelle
Article dans une revue
hal-02643239
v1
|
|
Risk of herbicide mixtures as a key parameter to explain phytoplankton fluctuation in a great lake: the case of Lake Geneva, Switzerland
Vincent Gregorio
,
Lucie Buechi
,
Orlane Anneville
,
Frédéric Rimet
,
Agnes Bouchez
et al.
Article dans une revue
hal-02644910
v1
|
|
Pioneer marine biofilms on artificial surfaces including antifouling coatings immersed in two contrasting French Mediterranean coast sites
Jean-François Briand
,
Ikram Djeridi
,
Dominique Jamet
,
Stéphane Coupé
,
Christine Bressy
et al.
Article dans une revue
hal-01362664
v1
|
|
The submillimeter spectrum of deuterated glycolaldehydes
Agnes Bouchez
,
L. Margulès
,
R. A. Motiyenko
,
Jean-Claude Guillemin
,
A. Walters
et al.
Article dans une revue
hal-00904702
v1
|
|
Biomonitoring river diatoms : implications of taxonomic resolution
Frédéric Rimet
,
Agnes Bouchez
Article dans une revue
istex
hal-02651506
v1
|
|
Life-forms, cell-sizes and ecological guilds of diatoms in European rivers
Frédéric Rimet
,
Agnes Bouchez
Article dans une revue
hal-02650771
v1
|
|
Molecular phylogeny of the family Bacillariaceae based on 18S rDNA sequences: focus on freshwater Nitzschia of the section Lanceolatae
Frédéric Rimet Rimet
,
Lenaïg L. Kermarrec
,
Agnes Bouchez
,
Lucien L. Hoffmann
,
Luc L. Ector
et al.
Article dans une revue
hal-00956037
v1
|
|
Use of diatom life-forms and ecological guilds to assess pesticide contamination in rivers : lotic mesocosm approaches
Frédéric Rimet
,
Agnes Bouchez
Article dans une revue
hal-02648538
v1
|
|
A preliminary phylogenetic analysis of the Cymbellales based on 18S rDNA gene sequencing
Lenaïg Kermarrec
,
Luc Ector
,
Agnes Bouchez
,
Frédéric Rimet
,
Lucien Hoffmann
Article dans une revue
hal-02648431
v1
|
|
Effects of organic herbicides on phototrophic microbial communities in freshwater ecosystems
S. Pesce
,
Agnes Bouchez
,
B. Montuelle
Article dans une revue
hal-00655976
v1
|
|
Comparison of the Effects of Two Herbicides and an Insecticide on Tropical Freshwater Plankton in Microcosms
C. Leboulanger
,
M. Bouvy
,
Philippe Cecchi
,
Laurence Amalric
,
Agnes Bouchez
et al.
Article dans une revue
istex
hal-00681317
v1
|
|
In-situ interactions between the effects of season, current velocity and pollution on a river biofilm
A. Villeneuve
,
Agnes Bouchez
,
Bernard Montuelle
Article dans une revue
istex
hal-02595328
v1
|
|
Impact of chronic and acute pesticide exposures on periphyton communities
Ahmed Tlili
,
Bernard Montuelle
,
Annette A. Berard
,
Agnes Bouchez
Article dans une revue
istex
hal-01319985
v1
|
|
Effects of flow regime and pesticides on periphytic communities : evolution and role of biodiversity
Aurélie Villeneuve
,
Bernard Montuelle
,
Agnes Bouchez
Article dans une revue
istex
hal-02646239
v1
|
|
Using diatom life-forms and ecological guilds to assess organic pollution and trophic level in rivers : a case study of rivers in south-eastern France
Vincent Berthon
,
Agnes Bouchez
,
Frédéric Rimet
Article dans une revue
istex
hal-02650841
v1
|
|
Influence of slight differences in environmental conditions (light, hydrodynamics) on the structure and function of periphyton
A. Villeneuve
,
Bernard Montuelle
,
Agnes Bouchez
Article dans une revue
istex
hal-02594603
v1
|
|
Transplantation of Microbenthic Algal assemblages to Assess Structural and Functional Recovery After Diuron Exposure
Ursula Dorigo
,
A. Berard
,
Agnes Bouchez
,
Frédéric Rimet
,
Bernard Montuelle
Article dans une revue
istex
hal-02593840
v1
|
|
In situ assessment of periphyton recovery in a river contaminated by pesticides
Ursula Dorigo
,
A. Berard
,
Frédéric Rimet
,
Agnes Bouchez
,
Bernard Montuelle
Article dans une revue
hal-02593841
v1
|
|
The periphyton as a multimetric bioindicator for assessing the impact of land use on rivers: an overview of the Ardières-Morcille experimental watershed (France)
Bernard Montuelle
,
Ursula Dorigo
,
A. Berard
,
B. Volat
,
Agnes Bouchez
et al.
Article dans une revue
istex
hal-02593726
v1
|
|
Genotoxic pressure of vineyard pesticides in fish : field and mesocosm surveys
Sylvie Bony
,
Christian C. Gillet
,
Agnes Bouchez
,
Christelle Margoum
,
Alain Devaux
Article dans une revue
istex
hal-02657801
v1
|
|
Genotoxic pressure of vineyard pesticides in fish: field and mesocosm surveys
Sylvie Bony
,
C. Gillet
,
Agnes Bouchez
,
C. Margoum
,
Alain Devaux
Aquatic Toxicology, 2008, 89, pp.197-203
Article dans une revue
hal-02590841
v1
|
|
Response of chronically contaminated biofilms to short pluses of diuron: an experimental study simulating flooding events in a small river
Amani Tlili
,
Ursula Dorigo
,
Bernard Montuelle
,
C. Margoum
,
Nadia Carluer
et al.
Article dans une revue
istex
hal-02590778
v1
|
|
The use of MapPop1.0 for choosing a QTL mapping sample from an advanced backcross population.
Christelle Birolleau-Touchard
,
Eric Hanocq
,
Agnes Bouchez
,
Cyril Bauland
,
Isabelle Dourien
et al.
Article dans une revue
istex
hal-02655103
v1
|
|
Lotic biofilm community structure and tolerance along a pesticide contamination gradient in a vineyard area
Ursula Dorigo
,
Christophe Leboulanger
,
A. Berard
,
Agnes Bouchez
,
J.F. Humbert
et al.
Aquatic Microbial Ecology, 2007, 50 (1), pp.91-102
Article dans une revue
hal-02590216
v1
|
|
Lotic biofilm community structure and pesticide tolerance along a contamination gradient in a vineyard area
Ursula Dorigo
,
Christophe Leboulanger
,
Annette Berard
,
Agnes Bouchez
,
Jean Francois Humbert
et al.
Article dans une revue
hal-02657128
v1
|
|
Marker-assisted introgression of favorable alleles at quantitative trait loci between maize elite lines
Agnes Bouchez
,
Frederic F. Hospital
,
Mathilde M. Causse
,
A. Gallais
,
Alain A. Charcosset
Genetics, 2002, 162, pp.1945-1959
Article dans une revue
hal-02670246
v1
|
|
Efficiency of the use of doubled-haploids in recurrent selection for combining ability
Agnes Bouchez
,
A. Gallais
Crop Science, 2000, 40 (1), pp.23-29
Article dans une revue
hal-02698581
v1
|
|
Sampling problems with nested mating designs for estimating epistatic variance components in testcrosses of maize
Christine Epinat
,
Agnes Bouchez
,
Alain A. Charcosset
,
A. Gallais
Maydica, 1996, 41, pp.287-293
Article dans une revue
hal-02686996
v1
|
|
Evaluation of selection index : application to the choice of an indirect multitrait selection index for soybean breeding
Agnes Bouchez
,
Bruno Goffinet
TAG Theoretical and Applied Genetics, 1990, 79, pp.261-267
Article dans une revue
hal-02714729
v1
|
|
Evaluation of selection index: application to the choice of an indirect multitrait selection index for soybean breeding
Agnes Bouchez
,
Bruno Goffinet
,
. Station de Biometrie Et Intelligence Artificielle
TAG Theoretical and Applied Genetics, 1989, 701, pp.1-7
Article dans une revue
hal-02719138
v1
|