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Agnès BOUCHEZ

17
Documents

Présentation

Ecologie microbienne aquatique

Publications

alain-franc

Molecular versus morphological data for benthic diatoms biomonitoring in Northern Europe freshwater and consequences for ecological status

Bonnie Bailet , Agnes Bouchez , Alain Franc , Jean-Marc Frigerio , François Keck
Metabarcoding and Metagenomics, 2019, 3, ⟨10.3897/mbmg.3.34002⟩
Article dans une revue hal-02432989v1

Phylogenetic signal in diatom ecology: perspectives for aquatic ecosystems biomonitoring

François Keck , Frédéric Rimet , Alain Franc , Agnes Bouchez
Ecological Applications, 2016, 26 (3), pp.861 - 872. ⟨10.1890/14-1966⟩
Article dans une revue hal-01426854v1
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R-Syst::diatom: an open-access and curated barcode database for diatoms and freshwater monitoring

Frédéric Rimet , Philippe Chaumeil , François Keck , Lenaïg Kermarrec , Valentin Vasselon
Database - The journal of Biological Databases and Curation, 2016, 2016, pp.baw016. ⟨10.1093/database/baw016⟩
Article dans une revue hal-01426772v1
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Linking phylogenetic similarity and pollution sensitivity to develop ecological assessment methods: a test with river diatoms

François Keck , Agnes Bouchez , Alain Franc , Frédéric Rimet
Journal of Applied Ecology, 2016, 53 (3), pp.856-864. ⟨10.1111/1365-2664.12624⟩
Article dans une revue hal-01426853v1
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phylosignal: an R package to measure, test, and explore the phylogenetic signal

François Keck , Frédéric Rimet , Agnes Bouchez , Alain Franc
Ecology and Evolution, 2016, 6 (9), pp.2774 - 2780. ⟨10.1002/ece3.2051⟩
Article dans une revue hal-01426773v1

When is sampling complete? The effects of geographical range and marker choice on perceived diversity in Nitzschia palea (Bacillariophyta)

Frédéric Rimet , Rosa Trobajo , David.G. Mann , Lenaïg Kermarrec , Alain Franc
Protist, 2014, 165 (3), pp.245-259. ⟨10.1016/j.protis.2014.03.005⟩
Article dans une revue hal-02640347v1

A next-generation sequencing approach to river biomonitoring using benthic diatoms

Lenaïg Kermarrec , Alain Franc , Frédéric Rimet , Philippe Chaumeil , Jean-Marc Frigerio
Freshwater Science, 2014, 33 (1), pp.349-363. ⟨10.1086/675079⟩
Article dans une revue hal-02632667v1

Next-generation sequencing to inventory taxonomic diversity in eukaryotic communities: a test for freshwater diatoms

Lenaïg Kermarrec , Alain Franc , Frédéric Rimet , Philippe Chaumeil , Jean-François Humbert
Molecular Ecology Resources, 2013, 13, pp.607-619
Article dans une revue bioemco-00840234v1

Next-generation sequencing to inventory taxonomic diversity in eukaryotic communities: a test for freshwater diatoms

Lenaïg Kermarrec , Alain Franc , Frédéric Rimet , Philippe Chaumeil , Jean Francois Humbert
Molecular Ecology Resources, 2013, 13 (4), pp.607-619. ⟨10.1111/1755-0998.12105⟩
Article dans une revue hal-02644189v1

Gaps to fill when analyzing freshwater diatom diversity with DNA barcoding – notes from a boreal region

Maria Kahlert , Agnes Bouchez , Philippe Chaumeil , Alain Franc , Jean-Marc Frigerio
6. European Phycological Congress, Aug 2015, Londres, United Kingdom. ⟨10.1080/09670262.2015.1069489⟩
Communication dans un congrès hal-02743082v1
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R-SYST network : a French consortium for barcoding and species identification

Agnes Bouchez , Marc Buée , Philippe Chaumeil , Valerie Laval , Marion Le Saux
Journées annuelles de la Société Française de Systématique : "Systématique et sciences participatives", Oct 2013, Paris, France. 1 p
Communication dans un congrès hal-01209971v1
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metaMatch: un algorithme pour l'assignation taxonomique en métagénomique

Jean-Marc Frigerio , Philippe Chaumeil , Pierre Gay , Lenaïg Kermarrec , Frédéric Rimet
journées scientifiques mésocentres et France Grilles 2012, Oct 2012, Paris, France
Communication dans un congrès hal-00766072v1
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New Biomonitoring Approaches based on Next Generation Sequencing : a Test for Freshwater Diatom Communities

Lenaïg Kermarrec , Frédéric Rimet , Alain Franc , Philippe Chaumeil , Jean Francois Humbert
22nd International Diatom Symposium, Ghent University [Belgium] (UGENT). National Botanic Garden of Belgium, Ghent, BEL., Aug 2012, Ghent, Belgium. 1p
Communication dans un congrès hal-02807004v1
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A pipeline for automatic taxonomic community inventories on data from NGS : an example with freshwater diatoms

Lenaïg L. Kermarrec , Philippe P. Chaumeil , Frédéric F. Rimet , Jean-Marc Frigerio , Valerie Laval
4th International Barcode of Life Conference, University of Adelaide. Adélaide, AUS., Nov 2011, Adélaide, Australia. 1p
Communication dans un congrès hal-00999998v1
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Efficiency of 3 genetic markers to determine the composition of a diatom assemblage using next generation sequencing

Lenaïg Kermarrec , Frédéric Rimet , Alain Franc , Philippe Chaumeil , Jean Francois Humbert
4thInternational Barcode of Life Conference, University of Adelaide. Adélaide, AUS., Nov 2011, Adélaide, Australia. 1p
Communication dans un congrès hal-02805342v1