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Microbial transfers in dairy systems under changing climate and farming practices
Sébastien Theil
,
Mahendra Mariadassou
,
Philippe Ruiz
,
Guillaume Kon Kam King
,
Matthieu Bouchon
et al.
JOBIM 20025, Jul 2025, Bordeaux, France
Poster de conférence
hal-05168268v1
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Microbial transfers in dairy systems under changing climate and farming practices
Sébastien Theil
,
Mahendra Mariadassou
,
Philippe Ruiz
,
Guillaume Kon Kam King
,
Matthieu Bouchon
et al.
FROGS Days, Dec 2025, Toulouse, France
Poster de conférence
hal-05462857v1
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Intra-species diversity in metagenomic datasets
Anne-Laure Abraham
,
Guillaume Kon Kam King
,
Solène Pety
,
Anne-Carmen Sanchez
,
Hélène Chiapello
et al.
JOBIM 2024, Jun 2024, Toulouse, France. , 2024
Poster de conférence
hal-04631038v1
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Characterization and quantification of antibiotic resistance gene variants in gut microbiota
Ouléye Sidibe
,
Anne-Carmen Sanchez
,
Guillaume Kon Kam King
,
Fanny Calenge
,
Benoît Doublet
et al.
35e colloque BIOTECHNOCENTRE, Oct 2023, Nouan le Fuzelier, France
Poster de conférence
hal-05190952v1
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Microbial transfers across a food chain: from grassland to cheese using metagenetic high-throughput sequencing approaches
Anne-Laure Abraham
,
Juliette Bloor
,
Céline Delbès
,
Annick Bernalier Donadille
,
Matthieu Bouchon
et al.
FORUM ON FERMENTED FOODS, May 2023, Lyon, France
Poster de conférence
hal-04221437v1
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Characterization and quantification of antibiotic resistance gene variants in gut microbiota.
Ouléye Sidibe
,
Anne-Carmen Sanchez
,
Guillaume Kon Kam King
,
Fanny Calenge
,
Benoît Doublet
et al.
JOBIM 2023, Jun 2023, Tours, France. 2023, JOBIM 2023 Proceedings
Poster de conférence
hal-04170846v1
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Combining marker genes in amplicon sequencing: a novel approach enhancing taxonomic profiling of microbial ecosystems
Benoît Goutorbe
,
Anne-Laure Abraham
,
Mahendra Mariadassou
,
Marion Bonnet
,
Anne Plauzolles
et al.
3rd International Conference on Holobionts, Jul 2022, Lyon, France. 2022
Poster de conférence
hal-04176902v1
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Construction of a reference genome catalog to decipher shared strains along an agrifood chain with shotgun metagenomic data
Fiona Bottin
,
Sébastien Theil
,
Céline Delbès
,
Panagiotis Sapountzsis
,
Hélène Chiapello
et al.
JOBIM, Jul 2022, Rennes, France
Poster de conférence
hal-04313747v1
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Precise detection of antibiotic resistance genes in chicken microbiota
Anne-Carmen Sanchez
,
Guillaume Kon Kam King
,
Sylvie Baucheron
,
Fanny Calenge
,
Hélène Chiapello
et al.
Journées Ouvertes en Biologie, Informatique et Mathématiques - JOBIM - colloque virtuel, Jul 2021, Paris, France.
Poster de conférence
hal-03337234v1
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Shallow sequencing: a cost-effective and accurate alternative to WGS for taxonomic profiling ?
Benoit Goutorbe
,
Anne-Laure Abraham
,
Mahendra Mariadassou
,
Valentin Loux
,
Olivier Rué
et al.
JOBIM, Jun 2020, Montpellier, France.
Poster de conférence
hal-03451271v1
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Metagenomic analysis of an african beer ecosystem using Food Microbiome Transfert application
Anne-Laure Abraham
,
Sandra Derozier
,
Quentin Cavaillé
,
Thibaut Guirimand
,
Solange Aka
et al.
jobim 2019, Jul 2019, Nantes, France. 2019
Poster de conférence
hal-02789073v1
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FoodMicrobiome transfert: Web based metagenomic analysis
Quentin Cavaillé
,
Thibaut Guirimand
,
Sandra Derozier
,
Anne-Laure Abraham
,
Bedis Dridi
et al.
JOBIM 2018 Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2018, Marseille, France. , 2018
Poster de conférence
hal-02008726v1
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Cheese ecosystems insights with shotgun metagenomics and a metadata extended genomics database.
Thibaut Guirimand
,
Charlie Pauvert
,
Sandra Derozier
,
Anne-Laure Abraham
,
Mahendra Mariadassou
et al.
JOBIM 2016 : Journées ouvertes de biologie informatique et mathématiques, Jun 2016, Lyon, France. , 2016
Poster de conférence
hal-01512085v1
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Food Microbiome-Transfert a database to characterize cheese ecosystems.
Thibaut Guirimand
,
Sandra S. Derozier
,
Charlie Pauvert
,
Anne-Laure Abraham
,
Valentin Loux
et al.
Journées Bioinformatique Inra, Mar 2016, Toulouse, France. , 2016
Poster de conférence
hal-02799027v1
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Accurate taxonomy assignments in cheeses ecosystems via a metagenomic approach
Charlie Pauvert
,
Anne-Laure Abraham
,
Mathieu Almeida
,
Nicolas Pons
,
Mahendra Mariadassou
et al.
JOBIM 2015 - Journées Ouvertes Biologie Informatique Mathématiques, Jul 2015, Clermont-Ferrand, France. , pp.1, 2015
Poster de conférence
hal-01204484v1
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How to design an efficient and robust pipeline for 16S rRNA-gene sequence analysis to improve our understanding on microbial communities?
Lucas Auer
,
Laurent Cauquil
,
Stephane Chaillou
,
Céline Delbès
,
Eric Dugat-Bony
et al.
JOBIM 16. Journées Ouvertes Biologie Informatique Mathématiques, Jul 2015, Clermont-Ferrand, France. , 2015
Poster de conférence
hal-01195512v1
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A shotgun metagenomic method to characterise low abundant species and assign precisely taxonomy in complex microbial ecosystems
Anne-Laure Abraham
,
Mathieu Almeida
,
Nicolas Pons
,
Charlie Pauvert
,
Sophie Schbath
et al.
ECCB'08: 7. European Conference on Computational Biology, Sep 2014, Strasbourg, France. , 2014
Poster de conférence
hal-01204320v1
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