Access content directly

Anne-Laure Abraham



Image document

A Guide for Ex Vivo Handling and storage of stool samples Intended for Fecal Microbiota transplantation

Sebastian D Burz , Anne-Laure Abraham , Fernanda Fonseca , Olivier David , Audrey Chapron
Scientific Reports, 2019, 9 (1), pp.8897. ⟨10.1038/s41598-019-45173-4⟩
Journal articles hal-02466120v1
Image document

Guide pratique à destination des biologistes, bioinformaticiens et statisticiens qui souhaitent s’initier aux analyses métabarcoding

Hélène Falentin , Lucas Auer , Mahendra Mariadassou , Géraldine Pascal , Olivier Rué
Le Cahier des Techniques de l'INRA, 2019, 2019 (97), pp.1-23
Journal articles hal-02311421v1
Image document

Serine protease inhibitors and human wellbeing interplay: new insights for old friends

Hela Mkaouar , Nizar Akermi , Aicha Kriaa , Anne-Laure Abraham , Amin Jablaoui
PeerJ, 2019, 7, pp.e7224. ⟨10.7717/peerj.7224⟩
Journal articles hal-02318313v1
Image document

Identification of New Factors Modulating Adhesion Abilities of the Pioneer Commensal Bacterium Streptococcus salivarius

Benoit Couvigny , Saulius Kulakauskas , Nicolas Pons , Benoit Quinquis , Anne-Laure Abraham
Frontiers in Microbiology, 2018, 9 (article 273), ⟨10.3389/fmicb.2018.00273⟩
Journal articles hal-01713777v1
Image document

Unprecedented large inverted repeats at the replication terminus of circular bacterial chromosomes suggest a novel mode of chromosome rescue

Hela El Kafsi , Valentin Loux , Mahendra Mariadassou , Camille Blin , Hélène Chiapello
Scientific Reports, 2017, 7, pp.1-11. ⟨10.1038/srep44331⟩
Journal articles hal-01509688v1
Image document

A fibrolytic potential in the human ileum mucosal microbiota revealed by functional metagenomic

Orlane Patrascu , Fabienne Beguet-Crespel , Ludovica Marinelli , Emmanuelle Le Chatelier , Anne-Laure Abraham
Scientific Reports, 2017, 7, ⟨10.1038/srep40248⟩
Journal articles hal-01606551v1

Beneficial metabolic effects of selected probiotics on diet-induced obesity and insulin resistance in mice are associated with improvement of dysbiotic gut microbiota

Jeanne Alard , Véronique Lehrter , Moez Rhimi , Irène Mangin , Véronique Peucelle
Environmental Microbiology, 2016, 18 (5), pp.1484-1497. ⟨10.1111/1462-2920.13181⟩
Journal articles hal-03372071v1
Image document

Functional comparison of bacteria from the human gut and closely related non-gut bacteria reveals the importance of conjugation and a paucity of motility and chemotaxis functions in the gut environment

Dragana Dobrijevic , Anne-Laure Abraham , Alexandre Jamet , Emmanuelle Maguin , Maarten van de Guchte
PLoS ONE, 2016, 11 (7), pp.e0159030. ⟨10.1371/journal.pone.0159030⟩
Journal articles hal-01353535v1
Image document

Multiple recent horizontal transfers of a large genomic region in cheese making fungi

Kevin Cheeseman , Jeanne Ropars , Pierre Renault , Joelle Dupont , Jerome Gouzy
Nature Communications, 2014, 5 (5), pp.2876. ⟨10.1038/ncomms3876⟩
Journal articles hal-01302473v1
Image document

Construction of a dairy microbial genome catalog opens new perspectives for the metagenomic analysis of dairy fermented products

Mathieu Almeida , Agnes Hebert , Anne-Laure Abraham , Simon Rasmussen , Christophe Monnet
BMC Genomics, 2014, 15, article 1101 (16 p.). ⟨10.1186/1471-2164-15-1101⟩
Journal articles hal-01195502v1

Genomics of Streptococcus salivarius, a major human commensal

Christine Delorme , Anne-Laure Abraham , Pierre Renault , Eric Guédon
Infection, Genetics and Evolution, 2014, 33, ⟨10.1016/j.meegid.2014.10.001⟩
Journal articles hal-01154007v1
Image document

Genome Sequence of the Lactic Acid Bacterium Lactococcus lactis subsp. lactis TOMSC161, Isolated from a Nonscalded Curd Pressed Cheese

Hélène Velly , Pierre Renault , Anne-Laure Abraham , Valentin Loux , Agnes Delacroix-Buchet
Genome Announcements, 2014, 2 (6), ⟨10.1128/genomeA.01121-14⟩
Journal articles hal-01193999v1

Dynamics and biological relevance of DNA demethylation in Arabidopsis antibacterial defense

Agnès Yu , Gersende Lepère , Florence Jay , Jingyu Wang , Laure Bapaume
Proceedings of the National Academy of Sciences of the United States of America, 2013, 110 (6), pp.2389-2394. ⟨10.1073/pnas.1211757110⟩
Journal articles hal-02318315v1

Genetic Modifiers of Chromatin Acetylation Antagonize the Reprogramming of Epi-Polymorphisms

Anne-Laure Abraham , Muniyandi Nagarajan , Jean-Baptiste Veyrieras , Hélène Bottin , Lars M. Steinmetz
PLoS Genetics, 2012, 8 (e1002958), pp.e1002958
Journal articles ensl-00807474v1
Image document

Genetic modifiers of chromatin acetylation antagonize the reprogramming of epi-polymorphisms.

Anne-Laure Abraham , Muniyandi Nagarajan , Jean-Baptiste Veyrieras , Hélène Bottin , Lars M Steinmetz
PLoS Genetics, 2012, 8 (9), pp.e1002958. ⟨10.1371/journal.pgen.1002958⟩
Journal articles ensl-00811503v1
Image document

Natural single-nucleosome epi-polymorphisms in yeast.

Muniyandi Nagarajan , Jean-Baptiste Veyrieras , Maud de Dieuleveult , Hélène Bottin , Steffen Fehrmann
PLoS Genetics, 2010, 6 (4), pp.e1000913. ⟨10.1371/journal.pgen.1000913⟩
Journal articles ensl-00811500v1

Genesis, effects and fates of repeats in prokaryotic genomes

Todd J. Treangen , Anne-Laure Abraham , Marie Touchon , Eduardo P.C Rocha
FEMS Microbiology Reviews, 2009, 33 (3), pp.539-571. ⟨10.1111/j.1574-6976.2009.00169.x⟩
Journal articles hal-02319386v1

Alternative to homo-oligomerisation: the creation of local symmetry in proteins by internal amplification

Anne-Laure Abraham , Joël Pothier , Eduardo P.C Rocha
Journal of Molecular Biology, 2009, 394 (3), pp.522-534. ⟨10.1016/j.jmb.2009.09.031⟩
Journal articles hal-02319387v1
Image document

Swelfe: a detector of internal repeats in sequences and structures.

Anne-Laure Abraham , Eduardo P C Rocha , Joël Pothier
Bioinformatics, 2008, 24 (13), pp.1536-7. ⟨10.1093/bioinformatics/btn234⟩
Journal articles pasteur-00336123v1
Image document

Characterization and quantification of antibiotic resistance gene variants in gut microbiota

Ouléye Sidibe , Anne-Carmen Sanchez , Guillaume Kon Kam King , Fanny Calenge , Benoît Doublet
9; Symposium on Antimicrobial Resistance in Animals and the Environment - ARAE, INRAE, Jul 2023, Tours (France), France
Conference papers hal-04169802v1
Image document

Shallow Shotgun Metagenomics as a cost-effective and accurate alternative to WGS for taxonomic profiling and clinical diagnosis

Benoit Goutorbe , Anne-Laure Abraham , Mahendra Mariadassou , Anne Plauzolles , Ghislain Bidaut
JOBIM, Jul 2021, Paris, France
Conference papers hal-03451266v1
Image document

A metagenomic tool for cheese ecosystems

Anne-Laure Abraham , Quentin Cavaillé , Thibaut Guirimand , Pierre Renault , Sandra Derozier
17. European Conference on Computational Biology (ECCB 2018, Workshop "Recent Computational Advances in Metagenomics (RCAM)", Sep 2018, Athenes, Greece
Conference papers hal-02789036v1
Image document

Food-Microbiomes Transfert, a shotgun metagenomic tool and a database to analyze cheese ecosystems

Thibaut Guirimand , Anne-Laure Abraham , Sandra Derozier , Charlie Pauvert , Mahendra Mariadassou
JOBIM 2017 - Journées Ouvertes Biologie Informatique Mathématiques, Jul 2017, Lille, France
Conference papers hal-02788899v1

Characterization and quantification of antibiotic resistance gene variants in gut microbiota.

Ouléye Sidibe , Anne-Carmen Sanchez , Guillaume Kon Kam King , Fanny Calenge , Benoît Doublet
JOBIM 2023, Jun 2023, Tours, France. 2023, JOBIM 2023 Proceedings
Conference poster hal-04170846v1

Combining marker genes in amplicon sequencing: a novel approach enhancing taxonomic profiling of microbial ecosystems

Benoît Goutorbe , Anne-Laure Abraham , Mahendra Mariadassou , Marion Bonnet , Anne Plauzolles
3rd International Conference on Holobionts, Jul 2022, Lyon, France. 2022
Conference poster hal-04176902v1
Image document

Precise detection of antibiotic resistance genes in chicken microbiota

Anne-Carmen Sanchez , Guillaume Kon Kam King , Sylvie Baucheron , Fanny Calenge , Hélène Chiapello
Journées Ouvertes en Biologie, Informatique et Mathématiques - JOBIM - colloque virtuel, Jul 2021, Paris, France.
Conference poster hal-03337234v1
Image document

Shallow sequencing: a cost-effective and accurate alternative to WGS for taxonomic profiling ?

Benoit Goutorbe , Anne-Laure Abraham , Mahendra Mariadassou , Valentin Loux , Olivier Rué
JOBIM, Jun 2020, Montpellier, France.
Conference poster hal-03451271v1
Image document

Metagenomic analysis of an african beer ecosystem using Food Microbiome Transfert application

Anne-Laure Abraham , Sandra Derozier , Quentin Cavaillé , Thibaut Guirimand , Solange Aka
jobim 2019, Jul 2019, Nantes, France. 2019
Conference poster hal-02789073v1
Image document

FoodMicrobiome transfert: Web based metagenomic analysis

Quentin Cavaillé , Thibaut Guirimand , Sandra Derozier , Anne-Laure Abraham , Bedis Dridi
JOBIM 2018 Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2018, Marseille, France. , 2018
Conference poster hal-02008726v1
Image document

Food Microbiome-Transfert a database to characterize cheese ecosystems.

Thibaut Guirimand , Sandra S. Derozier , Charlie Pauvert , Anne-Laure Abraham , Valentin Loux
Journées Bioinformatique Inra, Mar 2016, Toulouse, France. , 2016
Conference poster hal-02799027v1
Image document

Cheese ecosystems insights with shotgun metagenomics and a metadata extended genomics database.

Thibaut Guirimand , Charlie Pauvert , Sandra Derozier , Anne-Laure Abraham , Mahendra Mariadassou
JOBIM 2016 : Journées ouvertes de biologie informatique et mathématiques, Jun 2016, Lyon, France. , 2016
Conference poster hal-01512085v1

Accurate taxonomy assignments in cheeses ecosystems via a metagenomic approach

Charlie Pauvert , Anne-Laure Abraham , Mathieu Almeida , Nicolas Pons , Mahendra Mariadassou
JOBIM 2015 - Journées Ouvertes Biologie Informatique Mathématiques, Jul 2015, Clermont-Ferrand, France. , pp.1, 2015
Conference poster hal-01204484v1

How to design an efficient and robust pipeline for 16S rRNA-gene sequence analysis to improve our understanding on microbial communities?

Lucas Auer , Laurent Cauquil , Stephane Chaillou , Céline Delbes , Eric Dugat-Bony
JOBIM 16. Journées Ouvertes Biologie Informatique Mathématiques, Jul 2015, Clermont-Ferrand, France. , 2015
Conference poster hal-01195512v1
Image document

A shotgun metagenomic method to characterise low abundant species and assign precisely taxonomy in complex microbial ecosystems

Anne-Laure Abraham , Mathieu Almeida , Nicolas Pons , Charlie Pauvert , Sophie Schbath
ECCB'08: 7. European Conference on Computational Biology, Sep 2014, Strasbourg, France. , 2014
Conference poster hal-01204320v1