Alaksh Choudhury

9
Documents

Publications

Publications

Deep mutational scanning reveals the molecular determinants of RNA polymerase-mediated adaptation and tradeoffs

Alaksh Choudhury , Benoit Gachet , Zoya Dixit , Roland Faure , Ryan Gill et al.

Nature Communications, 2023, 14 (1), pp.6319. ⟨10.1038/s41467-023-41882-7⟩

Article dans une revue hal-04971471v1

Engineering global regulators for enhanced tolerance to multiple inhibitors by CRISPR ‐enabled trackable genome engineering

Xin Song , Yangyang Zheng , Shuting Li , Alaksh Choudhury , Xunli Liu et al.

AIChE Journal, 2023, 69 (4), ⟨10.1002/aic.18031⟩

Article dans une revue hal-04971478v1
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Cross-resistance to cefiderocol and ceftazidime–avibactam in KPC β-lactamase mutants and the inoculum effect

Claire Amaris Hobson , Aurélie Cointe , Hervé Jacquier , Alaksh Choudhury , Mélanie Magnan et al.

Clinical Microbiology and Infection, 2021, 27 (8), pp.1172.e7-1172.e10. ⟨10.1016/j.cmi.2021.04.016⟩

Article dans une revue hal-04971494v1

Engineering regulatory networks for complex phenotypes in E. coli

Rongming Liu , Liya Liang , Emily Freed , Alaksh Choudhury , Carrie Eckert et al.

Nature Communications, 2020, 11 (1), pp.4050. ⟨10.1038/s41467-020-17721-4⟩

Article dans une revue hal-04971504v1

CRISPR /Cas9 recombineering‐mediated deep mutational scanning of essential genes in Escherichia coli

Alaksh Choudhury , Jacob Fenster , Reilly Fankhauser , Joel Kaar , Olivier Tenaillon et al.

Molecular Systems Biology, 2020, 16 (3), ⟨10.15252/msb.20199265⟩

Article dans une revue hal-04971519v1

Integrating CRISPR-Enabled Trackable Genome Engineering and Transcriptomic Analysis of Global Regulators for Antibiotic Resistance Selection and Identification in Escherichia coli

Cong Chen , Alaksh Choudhury , Shuanghong Zhang , Andrew Garst , Xin Song et al.

mSystems, 2020, 5 (2), ⟨10.1128/msystems.00232-20⟩

Article dans une revue hal-04971506v1

Determinants for Efficient Editing with Cas9-Mediated Recombineering in Escherichia coli

Alaksh Choudhury , Reilly Fankhauser , Emily Freed , Eun Joong Oh , Andrew Morgenthaler et al.

ACS Synthetic Biology, 2020, 9 (5), pp.1083-1099. ⟨10.1021/acssynbio.9b00440⟩

Article dans une revue hal-04971521v1

KPC Beta-Lactamases Are Permissive to Insertions and Deletions Conferring Substrate Spectrum Modifications and Resistance to Ceftazidime-Avibactam

Claire Amaris Hobson , Stéphane Bonacorsi , Hervé Jacquier , Alaksh Choudhury , Mélanie Magnan et al.

Antimicrobial Agents and Chemotherapy, 2020, 64 (12), ⟨10.1128/aac.01175-20⟩

Article dans une revue hal-04971499v1

High-throughput navigation of the sequence space

Alaksh Choudhury

New Frontiers and Applications of Synthetic Biology, Elsevier, pp.123-146, 2022, ⟨10.1016/B978-0-12-824469-2.00011-7⟩

Chapitre d'ouvrage hal-04971488v1