
Alban Gaignard
70
Documents
Publications
Publications
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A Generic Framework to Better Understand and Compare FAIRness MeasuresEKAW 2024, Nov 2024, Amsterdam, Netherlands. pp.291-308, ⟨10.1007/978-3-031-77792-9_18⟩
Communication dans un congrès
hal-04830524
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Semantic BeaconsSWAT4HCLS'2025 - 16th International SWAT4HCLS conference : Semantic Web Applications and Tools for Health Care and Life Sciences, Feb 2025, Barcelone, Spain
Communication dans un congrès
hal-04976680
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Semantic Beacons: a framework to support federated querying over genomic variants and public Knowledge GraphsSWAT4HCLS 2025, Feb 2025, Barcelona, Catalonia, Spain
Communication dans un congrès
hal-04908530
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A multi-modal and temporal antibiotic resistance knowledge graphSWAT4HCLS 2025 - 16th International SWAT4HCLS conference : Semantic Web Applications and Tools for Health Care and Life Sciences, Scientifika, Feb 2025, Barcelone, Spain
Communication dans un congrès
hal-04976716
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A generic framework to better understand and compare FAIRness measuresKnowledge Engineering and Knowledge Management - 24rd International Conference, EKAW 2024, Nov 2024, Amsterdam, Netherlands
Communication dans un congrès
hal-04709107
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(more) Findable bioinformatics softwares with BioschemasElixir Tools platform, F2F meeting, Elixir, Mar 2023, Leyden, Netherlands
Communication dans un congrès
hal-04057569
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Extraction d'informations sur les workflows scientifiques à partir de la littérature23ème conférence francophone sur l'Extraction et la Gestion des Connaissances (EGC), Jan 2023, Lyon, France. pp.313-320
Communication dans un congrès
hal-03991363
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Schema.org : How is it used?International Semantic Web Conference (ISWC) 2023, Nov 2023, Athens, France
Communication dans un congrès
hal-04250523
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Découvrabilité et réutilisation de données produites par des workflows : un cas d’usage en génomiqueJournées Francophones d'Ingénierie des Connaissances (IC) Plate-Forme Intelligence Artificielle (PFIA'21), Jun 2021, Bordeaux, France. pp 73-80
Communication dans un congrès
emse-03260542
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On distributed collaboration for biomedical analysesCCGrid-Life 2019 Workshop on Clusters, Clouds and Grids for Life Sciences, May 2019, Larnaca, Cyprus. pp.1-10, ⟨10.1109/CCGRID.2019.00079⟩
Communication dans un congrès
hal-02080463
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3D bifurcations characterization for intra-cranial aneurysms predictionSPIE Medical Imaging, Feb 2019, San Diego, CA, United States. ⟨10.1117/12.2504626⟩
Communication dans un congrès
hal-01896717
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INEX-MED: a Knowledge Graph to explore and link heterogeneous bio-medical dataJOBIM 2019, Jul 2019, Nantes, France
Communication dans un congrès
hal-02330809
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SHARP: Harmonizing cross-workflow provenanceSeWeBMeDA 2017 : Semantic Web solutions for large-scale BioMedical Data Analtics - 14th ESWC 2017, May 2017, Portoroz, Slovenia
Communication dans un congrès
hal-01768394
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SHARP: Harmonizing and Bridging Cross-Workflow ProvenanceThe Semantic Web: ESWC 2017 Satellite Events - ESWC 2017 Satellite Events, Jun 2017, Portoro, Slovenia. pp.219-234, ⟨10.1007/978-3-319-70407-4_35⟩
Communication dans un congrès
hal-03875895
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SHARP: Harmonizing Galaxy and Taverna workflow provenanceSeWeBMeDA 2017 : Semantic Web solutions for large-scale BioMedical Data Analtics, May 2017, Portoroz, Slovenia
Communication dans un congrès
hal-01768401
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Developing and sharing reproducible bioinformatics pipelines: best practicesJOBIM 2017, Jul 2017, Lille, France
Communication dans un congrès
hal-01768429
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Regulation and signalization graph assembly through Linked Open DataJOBIM 2017, Jul 2017, Lille, France
Communication dans un congrès
hal-01768420
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From scientific workflow patterns to 5-star linked open dataTaPP 2016: 8th USENIX Workshop on the Theory and Practice of Provenance, Jun 2016, Washington D.C., United States
Communication dans un congrès
hal-01768449
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Global Initiative for Sentinel e-Health Network on Grid (GINSENG), Medical data integration and semantic developments for epidemiologyCCGRID, May 2014, Chicago, United States
Communication dans un congrès
hal-02083188
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Publication, partage et réutilisation de règles sur le Web de données25èmes Journées francophones d'Ingénierie des Connaissances, May 2014, Clermont-Ferrand, France. pp.237-248
Communication dans un congrès
hal-01015281
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Fédération multi-sources en neurosciences : intégration de données relationnelles et sémantiquesIC pour l'Interopérabilité Sémantique dans les applications en e-Santé, Jun 2012, France. 6 p
Communication dans un congrès
hal-01018722
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Semantic Federation of Distributed NeurodataMICCAI Workshop on Data- and Compute-Intensive Clinical and Translational Imaging Applications, Oct 2012, Nice, France. pp.41-50
Communication dans un congrès
hal-00746765
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KGRAM Versatile Inference and Query Engine for the Web of Linked DataIEEE/WIC/ACM International Conference on Web Intelligence, Dec 2012, Macao, China. pp.1-8
Communication dans un congrès
hal-00746772
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NeuroLOG: sharing neuroimaging data using an ontology-based federated approach.American Medical Informatics Association, Oct 2011, Washington DC, United States. pp.472-80
Communication dans un congrès
hal-00683087
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NeuroLOG: A framework for the sharing and reuse of distributed tools and data in neuroimagingOrganization for Human Brain Mapping (HBM'11), Jun 2011, Quebec, Canada
Communication dans un congrès
hal-00813796
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A federated system for sharing and reuse of images and image processing tools in neuroimagingComputer Assisted Radiology and Surgery (CARS'11), Jun 2011, Berlin, Germany
Communication dans un congrès
hal-00690921
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Characterizing semantic service parameters with Role concepts to infer domain-specific knowledge at runtimeInternational Conference on Knowledge Engineering and Ontology Development (KEOD'11), Oct 2011, Paris, France. pp.12
Communication dans un congrès
hal-00677829
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Grid-wide neuroimaging data federation in the context of the NeuroLOG project.HealthGrid'10, Jun 2010, Paris, France. pp.112-123, ⟨10.3233/978-1-60750-583-9-112⟩
Communication dans un congrès
inserm-00512799
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Intégration des connaissances en neurosciences dans un environnement multi-centriqueJournées francophones d'Ingénierie des Connaissances (IC 2010), Jun 2010, Nîmes, France. pp.21-30
Communication dans un congrès
hal-00691827
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A distributed security policy for neuroradiological data sharingHealthGrid 2009, Jun 2009, Berlin, Germany. pp.257-262, ⟨10.3233/978-1-60750-027-8-257⟩
Communication dans un congrès
hal-00677795
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Managing Variability Complexity in Aspect-Oriented ModelingIn Proceedings of ACM/IEEE 11th International Conference on Model Driven Engineering Languages and Systems (MoDELS 08), 2008, Toulouse, France, France
Communication dans un congrès
inria-00457129
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Managing Variability Complexity in Aspect Oriented Modelling12th International Conference on Model Driven Engineering Languages and Systems (MODELS'2009), ACM/IEEE, Sep 2008, Toulouse, France. pp.797-812
Communication dans un congrès
hal-00415774
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NeuroLOG: a community-driven middleware designHealthGrid, Jun 2008, Chicago, United States. pp.49--58
Communication dans un congrès
hal-00461611
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Introducing variability into Aspect-Oriented Modeling approachesIn Proceedings of ACM/IEEE 10th International Conference on Model Driven Engineering Languages and Systems (MoDELS 07), 2007, Nashville, TN, USA, United States
Communication dans un congrès
inria-00477562
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Sharing data and image processing tools in neuroimaging.CARS 2006 - Computer Assisted Radiology and Surgery, Jun 2006, Osaka, Japan. pp.41-42
Communication dans un congrès
inserm-00152138
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Orchestrating data flows throughout their whole life cycleJOBIM 2024 - Journées ouvertes en biologie, informatique, et mathématiques, Jun 2024, Toulouse, France. , 2024
Poster de conférence
hal-04618277
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The EDAM Framework and Control RoomJournées Ouvertes en Biologie Informatique et Mathématiques JOBIM 2024, Jun 2024, Toulouse, France
Poster de conférence
hal-04619281
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Orchestrating data flows throughout their whole life cycleJOBIM2024 : Journées Ouvertes en Biologie, Informatique, et Mathématiques - 2024, Jun 2024, Toulouse, France. 2024
Poster de conférence
hal-04665629
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Towards improving workflows reproducibility : Extracting information on workflows from text and code repositories31st Annual Intelligent Systems For Molecular Biology and 22nd Annual European Conference on Computational Biology (ISMB/ECCB 2023), Jul 2023, Lyon, France.
Poster de conférence
hal-04363577
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EDAM, the life-science ontology for data analysis and managementJOBIM, Jul 2022, Rennes, France. ⟨10.5281/zenodo.6769072⟩
Poster de conférence
hal-03702557
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FAIR-Checker : Checking and Inspecting metadata for FAIR bioinformatics resourcesElixir AllHands 2022, Jun 2022, Amsterdam, Netherlands
Poster de conférence
hal-03807367
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EDAM-bioimaging : The ontology of bioimage informatics operations, topics, data, and formats (update 2020)ELIXIR All Hands 2020, Jun 2020, Virtual, United Kingdom
Poster de conférence
hal-02910948
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EDAM-bioimaging : The ontology of bioimage informatics operations, topics, data, and formats (update 2019)3rd NEUBIAS Bioimage Analysis Community Conference 2019, Jun 2020, Luxembourg, Luxembourg
Poster de conférence
hal-02910949
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EDAM-bioimaging : The ontology of bioimage informatics operations, topics, data, and formatsNEUBIAS, Feb 2019, Luxembourg, Luxembourg. ⟨10.7490/f1000research.1115257.1⟩
Poster de conférence
hal-02267597
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INEX-MED: INtegration and EXploration of heterogeneous bio-MEDical dataJOBIM 2019, Jul 2019, Nantes, France
Poster de conférence
hal-02330853
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SHARP: Harmonizing and Bridging Cross-Workflow ProvenanceThe Semantic Web: ESWC 2017 Satellite Events Portorož, Slovenia, May 28 – June 1, 2017, Revised Selected Papers, 2017
Chapitre d'ouvrage
hal-01768385
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Bio-Image Informatics Index BIII: A unique database of image analysis tools and workflows for and by the bioimaging community2024
Pré-publication, Document de travail
hal-04453549
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An evaluation of EDAM coverage in the Tools Ecosystem and prototype integration of Galaxy and WorkflowHub systemsELIXIR. 2023
Rapport
hal-04206284
v1
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Atelier MoDaL (Multi-Scale Data Links)[Rapport de recherche] IRISA, Inria Rennes. 2020
Rapport
(rapport de recherche)
inserm-02507799
v4
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État des lieux MoDaL (Multi-Scale Data Links)[Rapport de recherche] IRISA, Inria Rennes. 2020
Rapport
(rapport de recherche)
hal-02557351
v1
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Distributed knowledge sharing and production through collaborative e-Science platformsOther [cs.OH]. Université Nice Sophia Antipolis, 2013. English. ⟨NNT : 2013NICE4010⟩
Thèse
tel-00827926
v2
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Sharing massive data analysis: from provenance to linked experiment reportsDoctoral. France. 2018
Cours
cel-02069606
v1
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