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Discovering alignment relations with Graph Convolutional Networks: A biomedical case studySemantic Web – Interoperability, Usability, Applicability, 2022, pp.1-20. ⟨10.3233/SW-210452⟩
Article dans une revue
hal-03452182v1
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PGxO and PGxLOD: a reconciliation of pharmacogenomic knowledge of various provenances, enabling further comparisonBMC Bioinformatics, 2019, 20 (S4), ⟨10.1186/s12859-019-2693-9⟩
Article dans une revue
hal-02103899v1
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Ontology-guided data preparation for discovering genotype-phenotype relationshipsBMC Bioinformatics, 2008, 9 (Suppl 4), pp.S3. ⟨10.1186/1471-2105-9-S4-S3⟩
Article dans une revue
inria-00338669v1
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Combiner plongements de graphes et clustering pour l'alignement de connaissances pharmacogénomiquesSanté & IA 2022 - Journée Santé et Intelligence Artificielle (Evènement affilié à PFIA 2022), Jun 2022, Saint-Etienne, France
Communication dans un congrès
hal-03754776v1
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Tackling scalability issues in mining path patterns from knowledge graphs: a preliminary studyALGOS 2020 - 1st International Conference on Algebras, Graphs and Ordered Sets, Aug 2020, Nancy, France
Communication dans un congrès
hal-02913224v1
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Knowledge-Based Matching of $n$-ary TuplesICCS 2020 - 25th International Conference on Conceptual Structures, Sep 2020, Bolzano / Virtual, Italy. pp.48-56, ⟨10.1007/978-3-030-57855-8_4⟩
Communication dans un congrès
hal-02493067v1
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Knowledge Reconciliation with Graph Convolutional Networks: Preliminary ResultsDL4KG2019 - Workshop on Deep Learning for Knowledge Graphs, Jun 2019, Portoroz, Slovenia
Communication dans un congrès
hal-02155546v1
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Combining Concept Annotation and Pattern Structures for Guiding Ontology MappingFCA4AI@IJCAI2018 - 6th International Workshop "What can FCA do for Artificial Intelligence?", Jul 2018, Stockholm, Sweden
Communication dans un congrès
hal-01858391v1
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Using formal concept analysis for checking the structure of an ontology in LOD: the example of DBpedia23rd International Symposium on Methodologies for Intelligent Systems, ISMIS 2017, Warsaw university of technology, Jun 2017, Warsaw, Poland. pp.674-683, ⟨10.1007/978-3-319-60438-1_66⟩
Communication dans un congrès
hal-01511909v1
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PGxO: A very lite ontology to reconcile pharmacogenomic knowledge unitsMethods, tools & platforms for Personalized Medicine in the Big Data Era, Oct 2017, Palermo, Italy. ⟨10.7287/peerj.preprints.3140v1⟩
Communication dans un congrès
hal-01593184v2
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Using pattern structures for analyzing ontology-based annotations of biomedical dataSeptièmes Journées d'Intelligence Artificielle Fondamentale, Jun 2013, Aix-en-Provence, France. pp.97--106
Communication dans un congrès
hal-00922392v1
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Lattice Based Data Access (LBDA): An Approach for Organizing and Accessing Linked Open Data in BiologyDMoLD'13 - Data Mining on Linked Data Workshop (ECML/PKDD, 2013), Sep 2013, Prague, Czech Republic
Communication dans un congrès
hal-00903450v1
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Using Pattern Structures for Analyzing Ontology-Based Annotations of Biomedical DataInternational Conference on Formal Concept Analysis, May 2013, Dresden, Germany
Communication dans un congrès
hal-00880643v1
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Formal Concept Analysis Applied to Transcriptomic DataThe Ninth International Conference on Concept Lattices and Their Applications - CLA 2012, Oct 2012, Fuengirola (Málaga), Spain
Communication dans un congrès
hal-00761003v1
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Formal Concept Analysis Applied to Transcriptomic DataWhat can FCA do for Artificial Intelligence (FCA4AI) (ECAI 2012), Aug 2012, Montpellier, France
Communication dans un congrès
hal-00760993v1
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Ontology Refinement through Role Assertion Analysis: Example in Pharmacogenomics21st International Workshop on Description Logics - DL2008, May 2008, Dresden, Germany
Communication dans un congrès
inria-00338677v1
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Ontology-guided Data Preparation for Discovering Genotype-Phenotype RelationshipsNetwork Tools and Applications in Biology: A Semantic Web for Bioinformatics - NETTAB 2007, Jun 2007, Pisa, Italy
Communication dans un congrès
inria-00186988v1
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Ontology-driven Data Integration for Pharmacogenomics: Application to Genome VariationsJournées Ouvertes : Biologie, Informatique et Mathématiques - JOBIM'06, Centre de Bioinformatique de Bordeaux (CBiB), Jul 2006, Bordeaux/France
Communication dans un congrès
inria-00080064v1
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SNP-Converter: an Ontology-Based solution to Reconcile Heterogeneous SNP Descriptions for Pharmacogenomic Studies3rd International Workshop on Data Integration in the Life Sciences 2006 - DILS'06, Jul 2006, European Bioinformatics Institute (EBI), Hinxton/UK
Communication dans un congrès
inria-00080050v1
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Suggested Ontology for Pharmacogenomics (SO-Pharm): Modular Construction and Preliminary TestingProceedings of International Workshop on Knowledge Systems in Bioinformatics - KSinBIT'06, Oct 2006, Montpellier, France
Communication dans un congrès
inria-00089824v1
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SNP-Ontology for semantic integration of genomic variation data14th Annual International Conference on Intelligent Systems for Molecular Biology - ISMB'06, Aug 2006, Fortaleza/Brésil
Communication dans un congrès
inria-00067863v2
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Discovering Subsumption Axioms with Concept AnnotationBDA 2017 - 33ème Conférence sur la Gestion de Données — Principes, Technologies et Applications, Nov 2017, Nancy, France. Gestion de Données — Principes, Technologies et Applications (BDA 2017)
Poster de conférence
hal-01671454v2
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Ontology-based knowledge discovery in pharmacogenomics.Hamid R. Arabnia and Quoc-Nam Tran. Software Tools and Algorithms for Biological Systems, 696, Springer, pp.357-66, 2011, Advances in Experimental Medicine and Biology, 978-1-4419-7046-6. ⟨10.1007/978-1-4419-7046-6_36⟩
Chapitre d'ouvrage
inria-00585072v1
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Data-Interlinking: the Seed of Knowledge Reconciliation in Pharmacogenomics2018
Pré-publication, Document de travail
hal-01955262v1
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