Anamaria Necsulea

Publications

Article dans une revue (27)

Transposable element expression is associated with sex chromosome number in humans Jordan Teoli,Miriam Merenciano,Marie Fablet,Anamaria Necsulea,Daniel Siqueira-De-Oliveiraet al. PLoS Genetics, 2025, 21 (6), pp.e1011668. ⟨10.1371/journal.pgen.1011668⟩ Article dans une revue hal-05183750v1
Random genetic drift sets an upper limit on mRNA splicing accuracy in metazoans Florian Bénitière,Anamaria Necsulea,Laurent Duret eLife, 2024, 13, pp.RP93629. ⟨10.7554/eLife.93629.3⟩ Article dans une revue hal-04258621v1
Tissue specificity follows gene duplication Anamaria Necsulea Nature Ecology & Evolution, 2024, 8 (6), pp.1068-1069. ⟨10.1038/s41559-024-02394-9⟩ Article dans une revue hal-04756097v1
GTDrift: a resource for exploring the interplay between genetic drift, genomic and transcriptomic characteristics in eukaryotes Florian Bénitière,Laurent Duret,Anamaria Necsulea NAR Genomics and Bioinformatics, 2024, 6 (2), pp.lqae064. ⟨10.1093/nargab/lqae064⟩ Article dans une revue hal-04609512v1
Transposable element expression with variation in sex chromosome number: insights into a toxic Y effect on human longevity Jordan Teoli,Miriam Merenciano,Marie Fablet,Anamaria Necsulea,Daniel Siqueira-De-Oliveiraet al. Peer Community In Genomics, 2023, ⟨10.1101/2023.08.03.550779⟩ Article dans une revue hal-04923419v1
Long-range promoter–enhancer contacts are conserved during evolution and contribute to gene expression robustness Alexandre Laverré,Eric Tannier,Anamaria Necsulea Genome Research, 2022, 32 (2), pp.280-296. ⟨10.1101/gr.275901.121⟩ Article dans une revue hal-03559410v1
Comparative Transcriptomics Analyses across Species, Organs, and Developmental Stages Reveal Functionally Constrained lncRNAs Fabrice Darbellay,Anamaria Necsulea Molecular Biology and Evolution, 2019, ⟨10.1093/molbev/msz212⟩ Article dans une revue hal-02400709v1
Transcriptional response to hepatitis C virus infection and interferon-alpha treatment in the human liver T. Boldanova,A. Suslov,M.H. Heim,A. Necsulea EMBO Molecular Medicine, 2017, 9, pp.816-834. ⟨10.15252/emmm.201607006⟩ Article dans une revue hal-02049665v1
The fitness cost of mis-splicing is the main determinant of alternative splicing patterns Baptiste Saudemont,Alexandra Popa,Joanna Parmley,Vincent Rocher,Corinne Blugeonet al. Genome Biology, 2017, 18, pp.208. ⟨10.1186/s13059-017-1344-6⟩ Article dans une revue hal-02321589v1
A role for HOX13 proteins in the regulatory switch between TADs at the HoxD locus L. Beccari,N. Yakushiji-Kaminatsui,J. M. Woltering,A. Necsulea,N. Lonfatet al. Genes and Development, 2016, 30, pp.1172-86. ⟨10.1101/gad.281055.116⟩ Article dans une revue hal-02016391v1
Hotair Is Dispensible for Mouse Development Ar. Amandio,A. Necsulea,E. Joye,B. Mascrez,D. Duboule PLoS Genetics, 2016, 12, pp.e1006232. ⟨10.1371/journal.pgen.1006232⟩ Article dans une revue hal-02016396v1
Control of Hoxd gene transcription in the mammary bud by hijacking a preexisting regulatory landscape R. Schep,A. Necsulea,E. Rodriguez-Carballo,I. Guerreiro,G. Andreyet al. Proceedings of the National Academy of Sciences of the United States of America, 2016, 113 (48), pp.e7720-e7729. ⟨10.1073/pnas.1617141113⟩ Article dans une revue hal-02049880v1
Assessing Recent Selection and Functionality at Long Noncoding RNA Loci in the Mouse Genome R. A. Wiberg,D. L. Halligan,R. W. Ness,A. Necsulea,H. Kaessmannet al. Genome Biology and Evolution, 2015, 7, pp.2432-44. ⟨10.1093/gbe/evv155⟩ Article dans une revue hal-02018996v1
The evolution of lncRNA repertoires and expression patterns in tetrapods Anamaria Necsulea,Magali Soumillon,Maria Warnefors,Angélica Liechti,Tasman Daishet al. Nature, 2014, 505 (7485), pp.635-640. ⟨10.1038/nature12943⟩ Article dans une revue hal-05451438v1
Cellular Source and Mechanisms of High Transcriptome Complexity in the Mammalian Testis M. Soumillon,A. Necsulea,M. Weier,D. Brawand,X. Zhanget al. Cell Reports, 2013, 3 (6), pp.2179-2190. ⟨10.1016/j.celrep.2013.05.031⟩ Article dans une revue hal-00852777v1
Mechanisms and Evolutionary Patterns of Mammalian and Avian Dosage Compensation Philippe Julien,David Brawand,Magali Soumillon,Anamaria Necsulea,Angélica Liechtiet al. PLoS Biology, 2012, 10 (5), pp.e1001328. ⟨10.1371/journal.pbio.1001328⟩ Article dans une revue hal-04549402v1
Meiotic recombination favors the spreading of deleterious mutations in human populations Anamaria Necsulea,L. Duret,Alexandra Popa,David N. Cooper,Peter Stentsonet al. Human Mutation, 2011, 32 (2), pp.198-206. ⟨10.1002/humu.21407⟩ Article dans une revue hal-00610795v1
The evolution of gene expression levels in mammalian organs David Brawand,Magali Soumillon,Anamaria Necsulea,Philippe Julien,Gábor Csárdiet al. Nature, 2011, 478 (7369), pp.343-348. ⟨10.1038/nature10532⟩ Article dans une revue hal-03263039v1
Monoallelic expression and tissue specificity are associated with high crossover rates A. Necşulea,M. Sémon,L. Duret,L.D. Hurst Trends in Genetics, 2009, 25(12), pp.519-522 Article dans une revue hal-00539368v1
Complete genome of the cellulolytic thermophile Acidothermus cellulolyticus 11B provides insights into its ecophysiological and evolutionary adaptations Ravi D. Barabote,Gary Xie,David H. Leu,Philippe Normand,Anamaria Necsuleaet al. Genome Research, 2009, 19, pp.1033-1043. ⟨10.1101/gr.084848.108⟩ Article dans une revue halsde-00526039v1
The relationship between DNA replication and human genome organization. Anamaria Necsulea,Claire Guillet,Jean-Charles Cadoret,Marie-Noëlle Prioleau,L. Duret Molecular Biology and Evolution, 2009, 26 (4), pp.729-741. ⟨10.1093/molbev/msn303⟩ Article dans une revue hal-00353551v1
Etude des patrons d`évolution asymétrique dans les séquences d`ADN A. Necşulea incollection, 2008, --, pp.476-482 Article dans une revue hal-00428219v1
Parallel Adaptations to High Temperatures in the Archean Eon Bastien Boussau,Samuel Blanquart,Anamaria Necsulea,Nicolas Lartillot,Manolo Gouy Nature, 2008, 456 (7224), pp.942-945. ⟨10.1038/nature07393⟩ Article dans une revue lirmm-00324159v1
A New Method for Assessing the Effect of Replication on DNA Base Composition Asymmetry A. Necşulea,J.R. Lobry incollection, 2007, 7, pp.379-381 Article dans une revue hal-00434554v1
A New Method for Assessing the Effect of Replication on DNA Base Composition Asymmetry A. Necşulea,J.R. Lobry Molecular Biology and Evolution, 2007, 24, pp.2169-2179 Article dans une revue hal-00434832v1
Revisiting the directionnal mutation pressure theory : The analysis of a particular genomic structure in &lt;i&gt;Leishmania major&lt;/i&gt; A. Necşulea,J.R. Lobry Gene, 2006, 385, pp.28-40 Article dans une revue hal-00428050v1
Synonymous codon usage and its potential link with optimal growth temperature in prokaryotes. J.R. Lobry,A. Necşulea Gene, 2006, 385, pp.128-136 Article dans une revue hal-00427983v1

Chapitre d'ouvrage (1)

Phylogenomics and Genome Annotation Anamaria Necsulea Scornavacca, Celine; Delsuc, Frédéric; Galtier, Nicolas. Phylogenetics in the Genomic Era, No commercial publisher | Authors open access book, pp.4.1:1--4.1:26, 2020 Chapitre d'ouvrage hal-02535669v1

Pré-publication, Document de travail (3)

Meta-analysis reveals limited reproducibility of lncRNA-related findings in hepatocellular carcinoma research Anamaria Necsulea,Philippe Veber,Tuyana Boldanova,Charlotte Ky Ng,Stefan Wielandet al. 2024 Pré-publication, Document de travail hal-04756111v1
GOntact: using chromatin contacts to infer Gene Ontology enrichments for cis -regulatory elements Alexandre Laverré,Eric Tannier,Philippe Veber,Anamaria Necsulea 2022 Pré-publication, Document de travail hal-03781024v1
LncRNA analyses reveal increased levels of non-coding centromeric transcripts in hepatocellular carcinoma Anamaria Necsulea,Philippe Veber,Tuyana Boldanova,Charlotte K Y Ng,Stefan Wielandet al. 2024 Pré-publication, Document de travail hal-04604260v1

Thèse (1)

Etude des patrons d'évolution asymétrique dans les séquences d'ADN Anamaria Necsulea Sciences du Vivant [q-bio]. Université Claude Bernard - Lyon I, 2008. Français. ⟨NNT : ⟩ Thèse tel-00305419v1

HDR (1)

Evolution and functional relevance of non-coding elements in vertebrate genomes Anamaria Necsulea Genomics [q-bio.GN]. Université Claude Bernard Lyon I, 2024 HDR tel-04787630v1

Logiciel (1)

seqinr: Biological Sequences Retrieval and Analysis Delphine Charif,Simon Penel,Jean R Lobry,Anamaria Necsulea 2023, ⟨swh:1:cnt:90d8feea73b421b419e5c3a672f3f4e21a967911;origin=https://github.com/lbbe-software/seqinr;visit=swh:1:snp:960fa7fc68bb841d84b1aa5bcb54bd72e2bfaff7;anchor=swh:1:rev:fffb71ded9892a59ab776bbb52dc0de27fcc7f30;path=/codemeta.json⟩ Logiciel hal-04980512v1