Andrew Davison

Publications

Article dans une revue (41)

The NeuroML ecosystem for standardized multi-scale modeling in neuroscience Ankur Sinha,Padraig Gleeson,Bóris Marin,Salvador Dura-Bernal,Sotirios Panagiotouet al. eLife, 2025, 13, pp.RP95135. ⟨10.7554/eLife.95135.1⟩ Article dans une revue hal-04749983v1
A comprehensive data-driven model of cat primary visual cortex Ján Antolík,Rémy Cagnol,Tibor Rózsa,Cyril Monier,Yves Frégnacet al. PLoS Computational Biology, 2024, 20 (8), pp.e1012342. ⟨10.1371/journal.pcbi.1012342⟩ Article dans une revue hal-04749948v1
NeoViewer: Facilitating reuse of electrophysiology data through browser-based interactive visualization Onur Ates,Shailesh Appukuttan,Hélissande Fragnaud,Corentin Fragnaud,Andrew P. Davison SoftwareX, 2024, 26, pp.101710. ⟨10.1016/j.softx.2024.101710⟩ Article dans une revue hal-04551480v1
EBRAINS Live Papers - Interactive Resource Sheets for Computational Studies in Neuroscience Shailesh Appukuttan,Luca L. Bologna,Felix Schürmann,Michele Migliore,Andrew P. Davison Neuroinformatics, 2023, 21 (1), pp.101-113. ⟨10.1007/s12021-022-09598-z⟩ Article dans une revue hal-03783756v1
The EBRAINS Hodgkin-Huxley Neuron Builder: An online resource for building data-driven neuron models Luca Leonardo Bologna,Roberto Smiriglia,Carmen Alina Lupascu,Shailesh Appukuttan,Andrew P. Davisonet al. Frontiers in Neuroinformatics, 2022, 16, pp.991609. ⟨10.3389/fninf.2022.991609⟩ Article dans une revue hal-03788861v1
A faster way to model neuronal circuitry Andrew P. Davison,Shailesh Appukuttan eLife, 2022, 11, pp.e84463. ⟨10.7554/eLife.84463⟩ Article dans une revue hal-04304568v1
Reproducing and quantitatively validating a biologically-constrained point-neuron model of CA1 pyramidal cells Shailesh Appukuttan,Andrew P. Davison Frontiers in Integrative Neuroscience, 2022, 16, pp.1041423. ⟨10.3389/fnint.2022.1041423⟩ Article dans une revue hal-03846983v1
HippoUnit: A software tool for the automated testing and systematic comparison of detailed models of hippocampal neurons based on electrophysiological data Sára Sáray,Christian A Rössert,Shailesh Appukuttan,Rosanna Migliore,Paola Vitaleet al. PLoS Computational Biology, 2021, 17 (1), pp.e1008114. ⟨10.1371/journal.pcbi.1008114⟩ Article dans une revue hal-03063383v1
Editorial: Reproducibility and Rigour in Computational Neuroscience Sharon Crook,Andrew P. Davison,Robert Mcdougal,Hans Ekkehard Plesser Frontiers in Neuroinformatics, 2020, 14, pp.23. ⟨10.3389/fninf.2020.00023⟩ Article dans une revue hal-02913122v1
[Rp] Dendrodendritic inhibition and simulated odor responses in a detailed olfactory bulb network model Andrew P. Davison ReScience C, 2020, ⟨10.5281/zenodo.3972130⟩ Article dans une revue hal-03046451v1
The SONATA data format for efficient description of large-scale network models Kael Dai,Juan Hernando,Yazan Billeh,Sergey Gratiy,Judit Planaset al. PLoS Computational Biology, 2020, 16 (2), pp.e1007696. ⟨10.1371/journal.pcbi.1007696⟩ Article dans une revue hal-02913116v1
Open Source Brain: A Collaborative Resource for Visualizing, Analyzing, Simulating, and Developing Standardized Models of Neurons and Circuits Padraig Gleeson,Matteo Cantarelli,Boris Marin,Adrian Quintana,Matt Earnshawet al. Neuron, 2019, 103 (3), pp.395. ⟨10.1016/j.neuron.2019.05.019⟩ Article dans une revue hal-02193259v1
Arkheia: Data Management and Communication for Open Computational Neuroscience Ján Antolík,Andrew P. Davison Frontiers in Neuroinformatics, 2018, 12, pp.6. ⟨10.3389/fninf.2018.00006⟩ Article dans une revue hal-01737956v1
Code Generation in Computational Neuroscience: A Review of Tools and Techniques Inga Blundell,Romain Brette,Thomas A Cleland,Thomas G Close,Daniel Cocaet al. Frontiers in Neuroinformatics, 2018, 12, pp.68. ⟨10.3389/fninf.2018.00068⟩ Article dans une revue hal-01996352v1
26th Annual Computational Neuroscience Meeting (CNS*2017): Part 2 Leonid L. Rubchinsky,Sungwoo Ahn,Wouter Klijn,Ben Cumming,Stuart Yateset al. BMC Neuroscience, 2017, 18 (Suppl 1), pp.59. ⟨10.1186/s12868-017-0371-2⟩ Article dans une revue hal-01580190v1
Sustainable computational science: the ReScience initiative Nicolas P. Rougier,Konrad Hinsen,Frédéric Alexandre,Thomas Arildsen,Lorena Barbaet al. PeerJ Computer Science, 2017, 3, pp.e142. ⟨10.7717/peerj-cs.142⟩ Article dans une revue hal-01592078v1
Toward standard practices for sharing computer code and programs in neuroscience Stephen Eglen,Ben Marwick,Yaroslav Halchenko,Michael Hanke,Shoaib Sufiet al. Nature Neuroscience, 2017, 20 (6), pp.770-773. ⟨10.1038/nn.4550⟩ Article dans une revue hal-02064847v1
A Commitment to Open Source in Neuroscience Padraig Gleeson,Andrew P. Davison,R Angus Silver,Giorgio Ascoli Neuron, 2017, 96 (5), pp.964-965. ⟨10.1016/j.neuron.2017.10.013⟩ Article dans une revue hal-02064834v1
La recherche reproductible : une communication scientifique explicite Christophe Pouzat,Andrew P. Davison,Konrad Hinsen Statistique et Société, 2016, Deux débats sur les données, 3 (1) Article dans une revue hal-01478360v1
Python in neuroscience. Eilif Muller,James A Bednar,Markus Diesmann,Marc-Oliver Gewaltig,Michael Hineset al. Frontiers in Neuroinformatics, 2015, 9, pp.11. ⟨10.3389/fninf.2015.00011⟩ Article dans une revue hal-01159440v1
libNeuroML and PyLEMS: using Python to combine procedural and declarative modeling approaches in computational neuroscience. Michael Vella,Robert C Cannon,Sharon M. Crook,Andrew P. Davison,Gautham Ganapathyet al. Front Neuroinform, 2014, 8, pp.38. ⟨10.3389/fninf.2014.00038⟩ Article dans une revue hal-01055565v1
Efficient generation of connectivity in neuronal networks from simulator-independent descriptions. Mikael Djurfeldt,Andrew P. Davison,Jochen M Eppler Front Neuroinform, 2014, 8, pp.43. ⟨10.3389/fninf.2014.00043⟩ Article dans une revue hal-01055563v1
Neo: an object model for handling electrophysiology data in multiple formats. Samuel Garcia,Domenico Guarino,Florent Jaillet,Todd Jennings,Robert Pröpperet al. Frontiers in Neuroinformatics, 2014, 8, pp.10. ⟨10.3389/fninf.2014.00010⟩ Article dans une revue hal-01055571v1
Integrated workflows for spiking neuronal network simulations. Ján Antolík,Andrew P. Davison Front Neuroinform, 2013, 7, pp.34. ⟨10.3389/fninf.2013.00034⟩ Article dans une revue hal-01055572v1
Creating, documenting and sharing network models. Sharon M. Crook,James A Bednar,Sandra Berger,Robert Cannon,Andrew P. Davisonet al. Network: Computation in Neural Systems, 2012, 23 (4), pp.131-49. ⟨10.3109/0954898X.2012.722743⟩ Article dans une revue hal-01055577v1
Collaborative modelling: the future of computational neuroscience? Andrew P. Davison Network: Computation in Neural Systems, 2012, 23 (4), pp.157-66. ⟨10.3109/0954898X.2012.718482⟩ Article dans une revue hal-01055579v1
Automated Capture of Experiment Context for Easier Reproducibility in Computational Research Andrew P. Davison Computing in Science and Engineering, 2012, 14 (4), pp.48-56. ⟨10.1109/MCSE.2012.41⟩ Article dans une revue hal-01055702v1
A comprehensive workflow for general-purpose neural modeling with highly configurable neuromorphic hardware systems. Daniel Brüderle,Mihai A Petrovici,Bernhard Vogginger,Matthias Ehrlich,Thomas Pfeilet al. Biological Cybernetics (Modeling), 2011, 104 (4-5), pp.263-96. ⟨10.1007/s00422-011-0435-9⟩ Article dans une revue hal-00635967v1
NeuroML: a language for describing data driven models of neurons and networks with a high degree of biological detail. Padraig Gleeson,Sharon M. Crook,Robert C Cannon,Michael L Hines,Guy O Billingset al. PLoS Computational Biology, 2010, 6 (6), pp.e1000815. ⟨10.1371/journal.pcbi.1000815⟩ Article dans une revue hal-00586776v1
Trends in programming languages for neuroscience simulations. Andrew P. Davison,Michael L Hines,Eilif Muller Frontiers in Neuroscience, 2009, 3 (3), pp.374-80. ⟨10.3389/neuro.01.036.2009⟩ Article dans une revue hal-00586787v1
PyNN: A Common Interface for Neuronal Network Simulators. Andrew P. Davison,Daniel Brüderle,Jochen Eppler,Jens Kremkow,Eilif Mulleret al. Frontiers in Neuroinformatics, 2009, 2, pp.11. ⟨10.3389/neuro.11.011.2008⟩ Article dans une revue hal-00586786v1
NEURON and Python. Michael L Hines,Andrew P. Davison,Eilif Muller Front Neuroinformatics, 2009, 3, pp.1. ⟨10.3389/neuro.11.001.2009⟩ Article dans une revue hal-00586782v1
Reliable recall of spontaneous activity patterns in cortical networks. Olivier Marre,Pierre Yger,Andrew P. Davison,Yves Frégnac Journal of Neuroscience, 2009, 29 (46), pp.14596-606. ⟨10.1523/JNEUROSCI.0753-09.2009⟩ Article dans une revue hal-00444943v1
Establishing a Novel Modeling Tool: A Python-based Interface for a Neuromorphic Hardware System Daniel Brüderle,Eric Muller,Andrew Davison,Eilif Muller,Johannes Schemmelet al. Frontiers in Neuroinformatics, 2009, 3, pp.17. ⟨10.3389/neuro.11.017.2009⟩ Article dans une revue hal-03047041v1
Simulation of networks of spiking neurons: A review of tools and strategies. Romain Brette,Michael Rudolph,Ted Carnevale,Michael Hines,David Beemanet al. Journal of Computational Neuroscience, 2007, 23 (3), pp.349-98. ⟨10.1007/s10827-007-0038-6⟩ Article dans une revue hal-00180662v1
Learning cross-modal spatial transformations through spike timing-dependent plasticity. Andrew P. Davison,Yves Frégnac Journal of Neuroscience, 2006, 26 (21), pp.5604-15. ⟨10.1523/JNEUROSCI.5263-05.2006⟩ Article dans une revue hal-00120625v1
Biophysical and phenomenological models of multiple spike interactions in spike-timing dependent plasticity. Mathilde Badoual,Quan Zou,Andrew P. Davison,Michael Rudolph,Thierry Balet al. International Journal of Neural Systems, 2006, 16 (2), pp.79-97 Article dans une revue hal-00120626v1
Semi-automated population of an online database of neuronal models (ModelDB) with citation information, using PubMed for validation. Andrew P. Davison,Thomas M Morse,Michele Migliore,Gordon M Shepherd,Michael L Hines Neuroinformatics, 2004, 2 (3), pp.327-32. ⟨10.1385/NI:2:3:327⟩ Article dans une revue hal-00299855v1
Dendrodendritic inhibition and simulated odor responses in a detailed olfactory bulb network model. Andrew P. Davison,Jianfeng Feng,David Brown Journal of Neurophysiology, 2003, 90 (3), pp.1921-35. ⟨10.1152/jn.00623.2002⟩ Article dans une revue hal-00299879v1
ModelDB: making models publicly accessible to support computational neuroscience. Michele Migliore,Thomas M Morse,Andrew P. Davison,Luis Marenco,Gordon M Shepherdet al. Neuroinformatics, 2003, 1 (1), pp.135-9. ⟨10.1385/NI:1:1:135⟩ Article dans une revue hal-00586793v1
A reduced compartmental model of the mitral cell for use in network models of the olfactory bulb. Andrew P. Davison,J. Feng,D. Brown Brain Research Bulletin, 2000, 51 (5), pp.393-9 Article dans une revue hal-00635986v1

Communication dans un congrès (9)

Helmholtz: a customizable framework for neurophysiology data management Andrew P. Davison,Thierry Bal,Domenico Guarino,Olivier Manette,Cyril Monieret al. Neuroinformatics 2013, INCF, Stockholm, Sweden, Aug 2013, Stockholm, Sweden. ⟨10.3389/conf.fninf.2013.09.00025⟩ Communication dans un congrès hal-03047325v1
STDP in topogra-phical neuronal networks. Pierre Yger,Abigail Morrison,M. Diesmann,Andrew P. Davison,Yves Frégnac Proceedings of the 44th Japan Workshop - ISTC-RIKEN BSI, 2008, Wako, Japan. pp.en cours Communication dans un congrès hal-00382367v1
Reliable recall of spontaneous activity patterns in chaotic cortical networks Olivier Marre,Pierre Yger,Andrew Davison,Yves Frégnac Deuxième conférence française de Neurosciences Computationnelles, "Neurocomp08", Oct 2008, Marseille, France Communication dans un congrès hal-00331545v1
PyNN: Towards a universal neural simulator API in Python. Andrew P. Davison,Pierre Yger,Jens Kremkow,Laurent Perrinet,Eilif Muller CNS 2007 Proceedings of the 16th Annual Computational Neuroscience Meeting, 2007, Toronto, Canada. pp.73 Communication dans un congrès hal-00381688v1
Plasticité associative dépendante de l'ordre temporel entre activités pré- et post-synaptiques (Spike Timing Dependent Plasticity) : son implication dans l'adaptation fonctionnelle des réseaux sensoriels et l'apprentissage perceptif. Mathilde Badoual,Thierry Bal,Pierre Baudot,Andrew P. Davison,Alain Destexheet al. Colloque de l'ACI (Action Concertée Incitative) Neurosciences Intégratives et Computationnelles, 2007, Paris, France. pp.en cours Communication dans un congrès hal-00380905v1
A combined pyschophysical--modelling investigation of the mechanisms of tactile picture perception. Andrew P. Davison,Pierre Yger,Yves Frégnac,J. Chan,F. Newell Proceedings of the 15th Annual Computational Neuroscience Meeting, 2006, Edinburgh, United Kingdom. pp.170 Communication dans un congrès hal-00380061v1
Learning simple computations in spiking basis function networks using spike time-dependent plasticity. Andrew P. Davison 4th Forum of European Neuroscience, 2004, Lisbon, Portugal. pp.A224 Communication dans un congrès hal-00379381v1
Training a network of spiking neurons to perform coordinate transformations. Andrew P. Davison,Yves Frégnac 34th Annual Meeting of the Society for Neuroscience, 2004, San Diego, United States. pp.4 Communication dans un congrès hal-00379386v1
Spike synchronization in a biophysically-detailed model of the olfactory bulb Andrew P. Davison,Jf Feng,D. Brown 9th Annual Computational Neuroscience Meeting, 2000, Brugge, Belgium. pp.515-521, ⟨10.1016/S0925-2312(01)00391-5⟩ Communication dans un congrès istex hal-01055784v1

Poster de conférence (1)

Neo: a Data Model for Electrophysiological Data Representation and its Python Implementation Florent Jaillet,Samuel Garcia,Andrew P. Davison,Luc Estebanez,Pierre Yger 17th Annual Meeting of the Organization for Human Brain Mapping (HBM 2011), Jun 2011, Québec, Canada. Poster de conférence hal-04128682v1

Chapitre d'ouvrage (4)

Sumatra: a toolkit for reproducible research Andrew P. Davison,Michele Mattioni,Dmitry Samarkanov,Bartosz Teleńczuk Implementing Reproducible Research, Chapman and Hall/CRC, 2014, 9781466561595 Chapitre d'ouvrage hal-05445182v1
Complexity in Neuronal Networks Yves Frégnac,Michael Rudolph,Andrew P. Davison,Alain Destexhe François Képès. Biological Networks, World Scientific, pp.291-338, 2007, Complex Systems and Interdisciplinary Science vol.3, 9789812706959 Chapitre d'ouvrage hal-00739550v1
Complexity and level hierarchy in neural networks Yves Frégnac,Michael Rudolph,Andrew P. Davison,Alain Destexhe François Képès. Biological networks, World Scientific Publishing Company, pp.1-52, 2007, Complex Systems and Interdisciplinary Science, vol. 3 Chapitre d'ouvrage hal-00211742v1
Biologically-Detailed Network Modelling Andrew P. Davison Jianfeng Feng. Computational Neuroscience. A Comprehensive Approach, Chapman & Hall / CRC Press, pp.287-304, 2004, Chapman & Hall/CRC Mathematical Biology and Medicine Chapitre d'ouvrage hal-00377318v1

Pré-publication, Document de travail (2)

Model descriptions in Neuroscience: computational performance and collaboration Pedro Garcia-Rodriguez,Andrew P. Davison,Lungsi Sharma,Shailesh Appukuttan 2022 Pré-publication, Document de travail hal-03586671v2
The cortico-thalamic loop attunes competitive lateral interactions across retinotopic and orientation preference maps Domenico G Guarino,Andrew P. Davison,Yves Frégnac,Ján Antolík 2023 Pré-publication, Document de travail (preprint/prepublication) hal-04304628v1

Logiciel (10)

fairgraph Andrew P. Davison,Yann Zerlaut,Peyman Najafi,Glynis Mattheisen 2025 Logiciel hal-04942684v1
EBRAINS Live Papers platform Shailesh Appukuttan,Andrew P. Davison 2025, ⟨swh:1:dir:314568a8bdbfd3e16c87e4980b095cafdf24e628;origin=https://hal.archives-ouvertes.fr/hal-04930633;visit=swh:1:snp:8449e9b9792d0cdc6bf2113c31f55dafffbac179;anchor=swh:1:rel:40f310b889a622b7edfebbfd767191b7a2892b17;path=/⟩ Logiciel hal-04930633v1
Neo Viewer v1.4.0 Andrew P. Davison,Onur Ates,Corentin Fragnaud 2021 Logiciel hal-03330213v1
HBP Neuromorphic Computing Platform version 2021A Andrew P. Davison,Jonathan Duperrier 2021 Logiciel hal-03330386v1
Neo v0.10.0 Samuel Garcia,Julia Sprenger,Peter N Steinmetz,Andrew P. Davison,Steffen Bürgerset al. 2021, ⟨swh:1:dir:6cfc16b5cdb3e9780f64acc78a75761be7242960;origin=https://hal.archives-ouvertes.fr/hal-04930650;visit=swh:1:snp:de066e0c290f9002a2414d244680e7be2c58c2e8;anchor=swh:1:rel:dfb9bdea15a4c3fc7ac246c06a1bc0db09c91010;path=/⟩ Logiciel hal-04930650v1
HBP Model Validation Framework v1.7 Shailesh Appukuttan,Andrew P. Davison 2021 Logiciel hal-03330341v1
PyNN v0.9.6 Andrew P. Davison,Laurent U Perrinet,Onur Ates,Eric Müller,Rémy Cagnolet al. 2020 Logiciel hal-03330164v1
Neo v0.9.0 Julia Sprenger,Samuel Garcia,Alexander Kleinjohann,Hugo van Kemenade,Achileas Koutsouet al. 2020 Logiciel hal-03330047v1
Neo v0.8.0 Achileas Koutsou,Chek Yin Choi,Richard C Gerkin,Hugo van Kemenade,Alexander Kleinjohannet al. 2019 Logiciel hal-03329305v1
fairgraph v0.5.1 Andrew P. Davison,Glynis Mattheisen,Yann Zerlaut 2019 Logiciel hal-03330091v1