Annabelle Haudry

Identifiants chercheurs

IdHAL :

annabelle-haudry

ORCID :

0000-0001-6088-0909

IdRef :

083544887

Publications

Article dans une revue (22)

Relaxed Purifying Selection is Associated with an Accumulation of Transposable Elements in Flies Vincent Mérel,Théo Tricou,Nelly Burlet,Annabelle Haudry Molecular Biology and Evolution, 2025, 42 (6), ⟨10.1093/molbev/msaf111⟩ Article dans une revue hal-05186701v1
Effective population size does not explain long-term variation in genome size and transposable element content in animals Alba Marino,Gautier Debaecker,Anna-Sophie Fiston-Lavier,Annabelle Haudry,Benoit Nabholz eLife, In press, ⟨10.7554/eLife.100574.1⟩ Article dans une revue hal-04791560v1
Genomic Analysis of European Drosophila melanogaster Populations Reveals Longitudinal Structure, Continent-Wide Selection, and Previously Unknown DNA Viruses Martin Kapun,Maite G Barrón,Fabian Staubach,Darren J Obbard,R Axel W Wiberget al. Molecular Biology and Evolution, 2020, 37 (9), pp.2661-2678. ⟨10.1093/molbev/msaa120⟩ Article dans une revue hal-04615912v2
High frequency of horizontal transfer in Jockey families (LINE order) of drosophilids Izabella L Tambones,Annabelle Haudry,Maryanna C Simão,Claudia M A Carareto Mobile DNA, 2019, 10 (1), ⟨10.1186/s13100-019-0184-1⟩ Article dans une revue hal-02484809v1
Dynamic Interactions Between the Genome and an Endogenous Retrovirus: Tirant in Drosophila simulans Wild-Type Strains Marie Fablet,Angelo Jacquet,Rita Rebollo,Annabelle A. Haudry,Carine Reyet al. G3, 2019, 9 (3), pp.855-865. ⟨10.1534/g3.118.200789⟩ Article dans une revue hal-02004384v1
Helena and BS: two travellers between the genera Drosophila and Zaprionus M C Simão,Annabelle A. Haudry,A Granzotto,N de Setta,C M A Carareto Genome Biology and Evolution, 2018, ⟨10.1093/gbe/evy184⟩ Article dans une revue hal-01907745v1
Strong phylogenetic inertia on genome size and transposable element content among 26 species of flies Camille Sessegolo,Nelly Burlet,Annabelle A. Haudry Biology Letters, 2016, 12 (8), ⟨10.1098/rsbl.2016.0407⟩ Article dans une revue hal-01907738v1
The transposable element environment of human genes is associated with histone and expression changes in cancer Laura Grégoire,Annabelle A. Haudry,Emmanuelle Lerat BMC Genomics, 2016, 17 (1), ⟨10.1186/s12864-016-2970-1⟩ Article dans une revue hal-01896846v1
Evidence for Widespread Positive and Negative Selection in Coding and Conserved Noncoding Regions of Capsella grandiflora Robert Williamson,Emily Josephs,Adrian Platts,Khaled Hazzouri,Annabelle A. Haudryet al. PLoS Genetics, 2014, 10 (9), ⟨10.1371/journal.pgen.1004622⟩ Article dans une revue hal-01907734v1
“One code to find them all”: a perl tool to conveniently parse RepeatMasker output files Marc Bailly-Bechet,Annabelle Haudry,Emmanuelle Lerat Mobile DNA, 2014, 5, pp.13. ⟨10.1186/1759-8753-5-13⟩ Article dans une revue hal-01332104v1
An atlas of over 90,000 conserved noncoding sequences provides insight into crucifer regulatory regions Annabelle A. Haudry,Adrian Platts,Emilio Vello,Douglas Hoen,Mickael Leclercqet al. Nature Genetics, 2013, 45 (8), pp.891 - 898. ⟨10.1038/ng.2684⟩ Article dans une revue hal-01907704v1
Bio++ : Efficient Extensible Libraries and Tools for Computational Molecular Evolution Laurent Gueguen,Sylvain Gaillard,Bastien Boussau,Manolo Gouy,Mathieu Groussinet al. Molecular Biology and Evolution, 2013, 30 (8), pp.1745 - 1750. ⟨10.1093/molbev/mst097⟩ Article dans une revue hal-01209906v1
Disentangling the effects of breakdown of self-incompatibility and transition to selfing in North-American &lt;i&gt;Arabidopsis lyrata&lt;/i&gt; A. Haudry,H.G. Zha,M. Stift,B.K. Mable Molecular Ecology, 2012, 21, pp.1130-1142. ⟨10.1111/j.1365-294X.2011.05435.x⟩ Article dans une revue istex hal-00697940v1
Reconstructing origins of loss of self-incompatibility and selfing in North American Arabidopsis lyrata: a population genetic context John Paul Foxe,Marc Stift,Andrew Tedder,Annabelle A. Haudry,Stephen Wrightet al. Evolution - International Journal of Organic Evolution, 2010, 64, pp.3495-3510. ⟨10.1111/j.1558-5646.2010.01094.x⟩ Article dans une revue hal-02304756v1
AN INTEGRATIVE TEST OF THE DEAD-END HYPOTHESIS OF SELFING EVOLUTION IN TRITICEAE (POACEAE) Juan Escobar,Alberto Cenci,Jeremy Bolognini,Annabelle A. Haudry,Stefan Laurentet al. Evolution - International Journal of Organic Evolution, 2010, 64 (10), pp.no - no. ⟨10.1111/j.1558-5646.2010.01045.x⟩ Article dans une revue hal-01907711v1
RECONSTRUCTING ORIGINS OF LOSS OF SELF-INCOMPATIBILITY AND SELFING IN NORTH AMERICAN ARABIDOPSIS LYRATA: A POPULATION GENETIC CONTEXT John Paul Foxe,Marc Stift,Andrew Tedder,Annabelle A. Haudry,Stephen Wrightet al. Evolution - International Journal of Organic Evolution, 2010, 64 (12), pp.3495 - 3510. ⟨10.1111/j.1558-5646.2010.01094.x⟩ Article dans une revue hal-01907714v1
High-throughput single nucleotide polymorphism genotyping in wheat (Triticum spp.) Aurélie A. Berard,Marie-Christine Le Paslier,Mireille M. Dardevet,Florence F. Exbrayat-Vinson,Isabelle I. Bonninet al. Plant Biotechnology Journal, 2009, 7 (4), pp.364-374. ⟨10.1111/j.1467-7652.2009.00404.x⟩ Article dans une revue hal-00964174v1
Mating system and recombination affect molecular evolution in four &lt;i&gt;Triticeae&lt;/i&gt; species A. Haudry,A. Cenci,C. Guilhaumon,E. Paux,S. Poirieret al. Genetics Research, 2008, 90, pp.97-109 Article dans une revue hal-00697941v1
Mating system and recombination affect molecular evolution in four Triticeae species A. A. Haudry,A. A. Cenci,Claire Guilhaumon,Etienne Paux,Sébastien Poirieret al. Genetics Research, 2008, 90 (1), pp.97-109. ⟨10.1017/S0016672307009032⟩ Article dans une revue hal-00964193v1
Grinding up wheat: a massive loss of nucleotide diversity since domestication A. Haudry,A. Cenci,C. Ravel,T. Bataillon,D. Brunelet al. Molecular Biology and Evolution, 2007, 24, pp.1506-1517 Article dans une revue hal-00697942v1
Grinding up wheat: A massive loss of nucleotide diversity since domestication Annabelle Haudry,Alberto Cenci,C. Ravel,Thomas Bataillon,Dominique Brunelet al. Molecular Biology and Evolution, 2007, 24 (7), pp.1506-1517. ⟨10.1093/molbev/msm077⟩ Article dans une revue hal-01189435v1
Impacts d’événements démographiques et sélectifs sur la diversité des plantes cultivées: apports de l’analyse du polymorphisme alliée à la théorie de la coalescence Thomas Bataillon,Nathalie N. Chantret,Alberto Cenci,Marie-Françoise Gautier,Philippe Joudrieret al. Actes du BRG, 2006, 6, pp.243-257 Article dans une revue hal-02658975v1

Poster de conférence (1)

Monitoring biodiversity of an alpine watershed using eDNA metabarcoding and ecological surveys: a collaborative work between students, scientists and citizens Florian Blanchard,Abigaël Chieux,Samuel Delorme,Quentin Derian,Uma Disdieret al. Biennial meeting of the French Society of Ecology and Evolution, Oct 2024, Lyon, France Poster de conférence hal-04837120v1

Chapitre d'ouvrage (1)

Population Genomics on the Fly: Recent Advances in Drosophila Annabelle Haudry,Stefan Laurent,Martin Kapun Statistical Population Genomics, pp.357-396, 2020, ⟨10.1007/978-1-0716-0199-0_15⟩ Chapitre d'ouvrage hal-02484816v1

Pré-publication, Document de travail (4)

Potential of eDNA metabarcoding for the inventory of alpine plants and mammals in the Vallorcine catchment area Camille Abran,Soufiane Alami,Océane Bertrand,Trystan Bessonnier,Arthur Drouetet al. 2026 Pré-publication, Document de travail hal-05495991v1
Monitoring and methods for estimating the biodiversity of a watercourse in an alpine ecosystem by metabarcoding analyses Amélie Bernard,Augustin Maniouloux,Clémentine Capitaine,Florian Petrilli,Ibtissam Dichet al. 2026 Pré-publication, Document de travail hal-05495981v1
Manual versus automatic annotation of transposable elements: case studies in Drosophila melanogaster and Aedes albopictus , balancing accuracy and biological relevance Tomas Carrasco-Valenzuela,Alba Marino,Jessica M Storer,Iago Bonnici,Camila J Mazzoniet al. 2025 Pré-publication, Document de travail hal-05389036v1
Environmental DNA and metabarcoding analysis for characterization and identification of mammal and plant communities in a freshwater ecosystem Florian Blanchard,Chieux Abigael,Delorme Samuel,Quentin Derian,Disdier Umaet al. 2026 Pré-publication, Document de travail hal-05495998v1