Anthony Bretaudeau

94
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Publications

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Pervasive formation of double-stranded RNAs by overlapping sense/antisense transcripts in budding yeast mitosis and meiosis

Ugo Szachnowski , Emmanuelle Becker , Igor Stuparevic , Maxime Wery , Olivier Sallou et al.
RNA, 2025, 31 (4), pp.497-513. ⟨10.1261/rna.080290.124⟩
Article dans une revue hal-04935733 v1
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Genome sequences of four Ixodes species expands understanding of tick evolution

Alexandra Cerqueira de Araujo , Benjamin Noël , Anthony Bretaudeau , Karine Labadie , Matéo Boudet et al.
BMC Biology, 2025, 23, pp.17. ⟨10.1186/s12915-025-02121-1⟩
Article dans une revue hal-04707197 v1
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The 5-Fluorouracil RNA Expression Viewer (5-FUR) Facilitates Interpreting the Effects of Drug Treatment and RRP6 Deletion on the Transcriptional Landscape in Yeast

Ugo Szachnowski , Oliver Sallou , Matéo Boudet , Anthony Bretaudeau , Maxime Wéry et al.
Yeast, 2024, 41 (10), pp.629-640. ⟨10.1002/yea.3982⟩
Article dans une revue hal-04718291 v1
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Identification of a viral gene essential for the genome replication of a domesticated endogenous virus in ichneumonid parasitoid wasps

Ange Lorenzi , Fabrice Legeai , Véronique Jouan , Pierre-Alain Girard , Michael R Strand et al.
PLoS Pathogens, 2024, 20 (4), pp.e1011980. ⟨10.1371/journal.ppat.1011980⟩
Article dans une revue hal-04572197 v1
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The Galaxy platform for accessible, reproducible, and collaborative data analyses: 2024 update

Linelle Ann L Abueg , Enis Afgan , Olivier Allart , Ahmed Awan , Wendi Bacon et al.
Nucleic Acids Research, 2024, 52 (W1), pp.W83-W94. ⟨10.1093/nar/gkae410⟩
Article dans une revue hal-04645009 v1
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Galaxy Training: A powerful framework for teaching!

Saskia Hiltemann , Helena Rasche , Simon Gladman , Hans-Rudolf Hotz , Delphine Larivière et al.
PLoS Computational Biology, 2023, 19 (1), pp.e1010752. ⟨10.1371/journal.pcbi.1010752⟩
Article dans une revue hal-04069041 v1
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First chromosome scale genomes of ithomiine butterflies (Nymphalidae: Ithomiini): comparative models for mimicry genetic studies

Jérémy Gauthier , Joana Meier , Fabrice Legeai , Melanie McClure , Annabel Whibley et al.
Molecular Ecology Resources, In press, 23 (4), pp.872-885. ⟨10.1111/1755-0998.13749⟩
Article dans une revue hal-03926527 v2
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The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update

Enis Afgan , Anton Nekrutenko , Bjórn Grüning , Daniel Blankenberg , Jeremy Goecks et al.
Nucleic Acids Research, 2022, 50 (W1), pp.W345-W351. ⟨10.1093/nar/gkac247⟩
Article dans une revue hal-04053853 v1
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Training Infrastructure as a Service

Helena Rasche , Cameron Hyde , John Davis , Simon Gladman , Nate Coraor et al.
GigaScience, 2022, 12, pp.giad048. ⟨10.1093/gigascience/giad048⟩
Article dans une revue hal-04183845 v1
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Spodoptera littoralis genome mining brings insights on the dynamic of expansion of gustatory receptors in polyphagous noctuidae

Camille Meslin , Pauline Mainet , Nicolas Montagné , Stéphanie Robin , Fabrice Legeai et al.
G3, 2022, 12 (8), pp.jkac131. ⟨10.1093/g3journal/jkac131⟩
Article dans une revue hal-03713321 v1
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AskoR, A R Package for Easy RNASeq Data Analysis

Susete Alves Carvalho , Kévin Gazengel , Anthony Bretaudeau , Stéphanie Robin , Stéphanie Daval et al.
Proceedings of The 1st International Electronic Conference on Entomology, 2021, ⟨10.3390/iece-10646⟩
Article dans une revue hal-04717074 v1
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Author Correction: Chromosomal scale assembly of parasitic wasp genome reveals symbiotic virus colonization

Jérémy Gauthier , Hélène Boulain , Joke J F A van Vugt , Lyam Baudry , Emma Persyn et al.
Communications Biology, 2021, 4, ⟨10.1038/s42003-021-02480-9⟩
Article dans une revue hal-04686846 v1
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Chromosomal scale assembly of parasitic wasp genome reveals symbiotic virus colonization

Jérémy Gauthier , Hélène Boulain , Joke J F A van Vugt , Lyam Baudry , Emma Persyn et al.
Communications Biology, 2021, 4 (1), pp.1-15. ⟨10.1038/s42003-020-01623-8⟩
Article dans une revue hal-03127732 v1
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Functional insights from the GC-poor genomes of two aphid parasitoids, "Aphidius ervi" and "Lysiphlebus fabarum

Alice Dennis , Gabriel Ballesteros , Stéphanie Robin , Lukas Schrader , Jens Bast et al.
BMC Genomics, 2020, 21 (Art. 376), pp.1-27. ⟨10.1186/s12864-020-6764-0⟩
Article dans une revue hal-02649295 v1
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Positive selection alone is sufficient for whole genome differentiation at the early stage of speciation process in the fall armyworm

Ki Woong Nam , Sandra Nhim , Stéphanie Robin , Anthony Bretaudeau , Nicolas Nègre et al.
BMC Evolutionary Biology, 2020, 20 (1), ⟨10.1186/s12862-020-01715-3⟩
Article dans une revue hal-03099735 v1
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Adaptation by copy number variation increases insecticide resistance in the fall armyworm

Sylvie Gimenez , Heba Abdelgaffar , Gaëlle Le Goff , Frédérique Hilliou , Carlos Blanco et al.
Communications Biology, 2020, 3 (1), pp.1-10. ⟨10.1038/s42003-020-01382-6⟩
Article dans une revue hal-03065279 v1

Soybean aphid biotype 1 genome: Insights into the invasive biology and adaptive evolution of a major agricultural pest

Rosanna Giordano , Ravi Kiran Donthu , Aleksey Zimin , Irene Consuelo Julca Chavez , Toni Gabaldon et al.
Insect Biochemistry and Molecular Biology, 2020, 120, pp.1-24. ⟨10.1016/j.ibmb.2020.103334⟩
Article dans une revue hal-03065382 v1
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Genomic architecture of endogenous ichnoviruses reveals distinct evolutionary pathways leading to virus domestication in parasitic wasps

Fabrice F. Legeai , Bernardo F Santos , Stéphanie Robin , Anthony Bretaudeau , Rebecca B Dikow et al.
BMC Biology, 2020, 18 (1), pp.1-23. ⟨10.1186/s12915-020-00822-3⟩
Article dans une revue hal-02918230 v1
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Metage2Metabo, microbiota-scale metabolic complementarity for the identification of key species

Arnaud Belcour , Clémence Frioux , Méziane Aite , Anthony Bretaudeau , Falk Hildebrand et al.
Article dans une revue hal-02395024 v2
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The genome sequence of the grape phylloxera provides insights into the evolution, adaptation, and invasion routes of an iconic pest

Claude Rispe , Fabrice Legeai , Paul Nabity , Rosa Fernández , Arinder Arora et al.
BMC Biology, 2020, 18 (1), pp.90. ⟨10.1186/s12915-020-00820-5⟩
Article dans une revue hal-02917617 v1
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Tripal v3: an ontology-based toolkit for construction of FAIR biological community databases.

Shawna Spoor , Chun-Huai Cheng , Lacey-Anne Sanderson , Bradford Condon , Abdullah Almsaeed et al.
Database - The journal of Biological Databases and Curation, 2019, 2019, pp.baz077. ⟨10.1093/database/baz077⟩
Article dans une revue hal-02318314 v1

Community-Driven Data Analysis Training for Biology

Bérénice Batut , Saskia Hiltemann , Andrea Bagnacani , Dannon Baker , Vivek Bhardwaj et al.
Cell Systems, 2018, 6 (6), pp.752-758.e1. ⟨10.1016/j.cels.2018.05.012⟩
Article dans une revue hal-04863943 v1

Draft genome and reference transcriptomic resources for the urticating pine defoliator Thaumetopoea pityocampa (Lepidoptera: Notodontidae)

Bernhard Gschloessl , Franck Dorkeld , Helene Berges , Genséric Beydon , Olivier Bouchez et al.
Molecular Ecology Resources, 2018, 18 (3), pp.602-619. ⟨10.1111/1755-0998.12756⟩
Article dans une revue hal-02627784 v1
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<em>De novo</em> genome and transcriptome resources of the Adzuki bean borer <em>Ostrinia scapulalis</em> (Lepidoptera: Crambidae)

Bernhard Gschloessl , Franck Dorkeld , Philippe Audiot , Anthony Bretaudeau , Carole Kerdelhue et al.
Data in Brief, 2018, 17, pp.781-787. ⟨10.1016/j.dib.2018.01.073⟩
Article dans une revue (data paper) hal-02627842 v1
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Two genomes of highly polyphagous lepidopteran pests (Spodoptera frugiperda, Noctuidae) with different host-plant ranges

Anaïs Gouin , Anthony Bretaudeau , Kiwoong Nam , Sylvie Gimenez , Jean-Marc Aury et al.
Scientific Reports, 2017, 7 (1), pp.1-12. ⟨10.1038/s41598-017-10461-4⟩
Article dans une revue hal-01633879 v1
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Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species

Thomas C. Mathers , Yazhou Chen , Gemy Kaithakottil , Fabrice Legeai , Sam T. Mugford et al.
Genome Biology, 2017, 18 (1), pp.27. ⟨10.1186/s13059-016-1145-3⟩
Article dans une revue hal-01500475 v1
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Genome scans on experimentally evolved populations reveal candidate regions for adaptation to plant resistance in the potato cyst nematode Globodera pallida.

Delphine Eoche-Bosy , Matthieu Gautier , Magali Esquibet , Fabrice Legeai , Anthony Bretaudeau et al.
Molecular Ecology, 2017, 26 (18), pp.4700-4711. ⟨10.1111/mec.14240⟩
Article dans une revue hal-01605681 v2
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Dosage compensation and sex-specific epigenetic landscape of the X chromosome in the pea aphid.

Gautier Richard , Fabrice Legeai , Nathalie Prunier-Leterme , Anthony Bretaudeau , Denis Tagu et al.
Epigenetics & Chromatin, 2017, 10 (1), pp.1-17. ⟨10.1186/s13072-017-0137-1⟩
Article dans une revue hal-01555242 v1
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Erratum to: Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species

Thomas C. Mathers , Yazhou Chen , Gemy Kaithakottil , Fabrice Legeai , Sam T. Mugford et al.
Genome Biology, 2017, 18 (1), pp.63. ⟨10.1186/s13059-017-1202-6⟩
Article dans une revue hal-01588181 v1
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De novo transcriptome assembly of the grapevine phylloxera allows identification of genes differentially expressed between leaf- and root-feeding forms

Claude Rispe , Fabrice Legeai , Daciana Papura , Anthony Bretaudeau , Sylvie Hudaverdian et al.
BMC Genomics, 2016, 17 (1), pp.219. ⟨10.1186/s12864-016-2530-8⟩
Article dans une revue hal-01286528 v1
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Tools and data services registry: a community effort to document bioinformatics resources.

Jon Ison , Kristoffer Rapacki , Hervé Ménager , Matúš Kalaš , Emil Rydza et al.
Nucleic Acids Research, 2016, 44 (D1), pp.D38-47. ⟨10.1093/nar/gkv1116⟩
Article dans une revue hal-01594840 v1
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BioMAJ2Galaxy: automatic update of reference data in Galaxy using BioMAJ

Anthony Bretaudeau , Cyril Monjeaud , Yvan Le Bras , Fabrice Legeai , Olivier Collin
GigaScience, 2015, 4, pp.22. ⟨10.1186/s13742-015-0063-8⟩
Article dans une revue hal-01240449 v1
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Establishment and analysis of a reference transcriptome for Spodoptera frugiperda

Fabrice Legeai , Sylvie Gimenez , Bernard Duvic , Jean-Michel Escoubas , Anne-Sophie Gosselin Grenet et al.
BMC Genomics, 2014, 15 (1), pp.704. ⟨10.1186/1471-2164-15-704⟩
Article dans une revue hal-01058982 v1
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The duplicated genes database: identification and functional annotation of co-localised duplicated genes across genomes

Marion Ouedraogo , Charles Bettembourg , Anthony Bretaudeau , Olivier Sallou , Christian Diot et al.
PLoS ONE, 2012, 7 (11), pp.e50653. ⟨10.1371/journal.pone.0050653⟩
Article dans une revue hal-00841104 v1
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PHYMYCO-DB: A Curated Database for Analyses of Fungal Diversity and Evolution

Stéphane Mahé , Marie Duhamel , Thomas Le Calvez , Laëtitia Guillot , Ludmila Sarbu et al.
PLoS ONE, 2012, 7 (9), pp.e43117. ⟨10.1371/journal.pone.0043117⟩
Article dans une revue hal-00756250 v1

Seqcrawler: biological data indexing and browsing platform.

Olivier Sallou , Anthony Bretaudeau , Aurelien Roult
BMC Bioinformatics, 2012, 13 (1), pp.175. ⟨10.1186/1471-2105-13-175⟩
Article dans une revue hal-00728279 v1
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CyanoLyase: a database of phycobilin lyase sequences, motifs and functions

Anthony Bretaudeau , François Coste , Florian Humily , Laurence Garczarek , Gildas Le Corguillé et al.
Nucleic Acids Research, 2012, pp.6. ⟨10.1093/nar/gks1091⟩
Article dans une revue hal-01094087 v1
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AnnotQTL: a new tool to gather functional and comparative information on a genomic region

Frédéric Lecerc , Anthony Bretaudeau , Olivier Sallou , Colette Désert , Yuna Blum et al.
Nucleic Acids Research, 2011, 39 (Suppl 2), open access. ⟨10.1093/nar/gkr361⟩
Article dans une revue hal-00597398 v1

Misconceptions about Galaxy debunked by the (French) Galaxy Community

Romane Libouban , Eva Mercier , Thomas Chaussepied , Bérénice Batut , Anthony Bretaudeau et al.
JOBIM 2024 - Journées Ouvertes Biologie Informatique Mathématiques, Jun 2024, TOULOUSE, France. pp.1-28
Communication dans un congrès hal-04694551 v1
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Galaxy France: an example of a national UseGalaxy server

Clea Siguret , Thomas Chaussepied , Romane Libouban , Eva Mercier , Julien Seiler et al.
GCC 2024 - Galaxy Community Conference, Jun 2024, Brno, Czech Republic. pp.1-15, ⟨10.7490/f1000research.1119767.1⟩
Communication dans un congrès hal-04644627 v1
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AskoR, A R Package for Easy RNASeq Data Analysis

Susete Alves Carvalho , Kévin Gazengel , Anthony Bretaudeau , Stéphanie Robin , Stéphanie Daval et al.
IECE 2021 - 1st International Electronic Conference on Entomology, Jul 2021, Virtual, France. pp.1-8, ⟨10.3390/IECE-10646⟩
Communication dans un congrès hal-03347665 v1

Metabolic complementarity applied to the screening of microbiota and the identification of key species

Clémence Frioux , Arnaud Belcour , Méziane Aite , Anthony Bretaudeau , Falk Hildebrand et al.
CMSB 2021 - 19th International Conference on Computational Methods in Systems Biology, Sep 2021, Bordeaux, France. pp.1-27
Communication dans un congrès hal-03440212 v1

Metabolic complementarity applied to the screening of microbiota and the identification of key species

Clémence Frioux , Arnaud Belcour , Meziane Aite , Anthony Bretaudeau , Falk Hildebrand et al.
JOBIM 2021 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2021, Paris, France
Communication dans un congrès hal-03440232 v1

Metabolic complementarity applied to the screening of microbiota and the identification of key species

Clémence Frioux , Arnaud Belcour , Méziane Aite , Anthony Bretaudeau , Falk Hildebrand et al.
MPA 2021 - 8th Metabolic Pathway Analysis, Aug 2021, Knoxville, TN, United States. pp.1-27
Communication dans un congrès hal-03440221 v1
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AskOmics: a user-friendly interface to Semantic Web technologies for integrating local datasets with reference resources

Xavier Garnier , Anthony Bretaudeau , Fabrice Legeai , Anne Siegel , Olivier Dameron
JOBIM 2019 - Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2019, Nantes, France. pp.1
Communication dans un congrès hal-02401750 v1

Integration of Linked Data into Galaxy using Askomics

Xavier Garnier , Olivier Dameron , Olivier Filangi , Fabrice Legeai , Anthony Bretaudeau
Galaxy Community Conference, Jun 2017, Montpellier, France
Communication dans un congrès hal-01576870 v1
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AskOmics, a web tool to integrate and query biological data using semantic web technologies

Xavier Garnier , Anthony Bretaudeau , Olivier Filangi , Fabrice Legeai , Anne Siegel et al.
JOBIM 2017 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2017, Lille, France. pp.1
Communication dans un congrès hal-01577425 v1

BIPAA/Askomics, a new and easy approach for querying genomics and epigenomics elements in interaction

Fabrice Legeai , Charles Bettembourg , Anthony Bretaudeau , Yvanne Chaussin , Olivier Dameron et al.
XXVth International Congress of Entomology 2016, Sep 2016, Orlando, Florida, United States
Communication dans un congrès hal-01391080 v1
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Genome scans on experimentaly evolved globodera pallida populations to identify molceular basis of adaptation to GPAV(VRN) potato resistance

Delphine Eoche-Bosy , Magali Esquibet , Sylvain Fournet , Mathieu Gautier , Fabrice Legeai et al.
Joint Meeting of the Society of Nematologists and the Organization of Nematologists of Tropical America (ONTA), 2016, Jul 2016, Montreal, Canada. 387 p
Communication dans un congrès hal-01602955 v1
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AskOmics : Intégration et interrogation de réseaux de régulation génomique et post-génomique

Charles Bettembourg , Olivier Dameron , Anthony Bretaudeau , Fabrice Legeai
IN OVIVE (INtégration de sources/masses de données hétérogènes et Ontologies, dans le domaine des sciences du VIVant et de l’Environnement), Institut National de Recherche en Informatique et en Automatique (INRIA). Rennes, FRA., Jun 2015, Rennes, France. pp.7
Communication dans un congrès hal-01184903 v1

Automatic update of reference data in Galaxy using BioMAJ.

Anthony Bretaudeau , Yvan Le Bras , Cyril Monjeaud , Olivier Collin
Galaxy Day 2014, Institut Français de Bioinformatique, Dec 2014, Paris, France
Communication dans un congrès hal-01102421 v1
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A study of phylloxera transcriptomes, comparing root and leaf feeding morphs

Claude Rispe , Daciana Papura , Fabrice Legeai , Julie Jaquiéry , Anthony Bretaudeau et al.
6. International Phylloxera Symposium, Institut National de Recherche Agronomique (INRA). UMR Ecophysiologie et Génomique Fonctionnelle de la Vigne (1287)., Aug 2013, Bordeaux, France. 59 p
Communication dans un congrès hal-01208647 v1
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AphidAtlas : avancées récentes

Anthony Bretaudeau , Olivier Dameron , Fabrice Legeai , Yvan Rahbé
BAPOA 2013 MOP, Oct 2013, Montpellier, France
Communication dans un congrès hal-00913155 v1

Towards a Life Sciences Virtual Research Environment

Yvan Le Bras , Aurélien Roult , Cyril Monjoeaud , Bahin Mathieu , Olivier Quenez et al.
JOBIM 2013 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2013, Toulouse, France
Communication dans un congrès hal-01102438 v1
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Hadoopizer : a cloud environment for bio-informatics data analysis

Anthony Bretaudeau , Olivier Sallou , Olivier Collin
journées scientifiques mésocentres et France Grilles 2012, Oct 2012, Paris, France
Communication dans un congrès hal-00766066 v1

AnnotQTL: a new tool to gather functional and comparative information on a genomic region

Frédéric Lecerf , Anthony Bretaudeau , Olivier Sallou , Colette Désert , Anne Blum et al.
15th QTLMAS, Institut National de Recherche Agronomique (INRA). UMR Génétique Animale (0598)., May 2011, Rennes, France
Communication dans un congrès hal-02746678 v1
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BYTE-Sea: the digital infrastructure of ATLASea, the French marine genome sequencing programme

Annie Lebreton , Loraine Brillet-Guéguen , Karine Massau , Alexandre Nicaise , Arthur Le Bars et al.
JOBIM2025, Jul 2025, Bordeaux, France
Poster de conférence hal-05135947 v1
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Exploring the Richness of the French Galaxy Ecosystem

Bérénice Batut , Gildas Le Corguillé , Anthony Bretaudeau
JOBIM 2025 - Journées Ouvertes en bioinformatique et de la biostatistique francophone, Jul 2025, Bordeaux, France. 2025
Poster de conférence hal-05132824 v1
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Breaking myths: The reality of Galaxy's capabilities and impact

Gildas Le Corguillé , Anthony Bretaudeau , Björn Grüning , Wendi Bacon , Bérénice Batut
JOBIM 2025 - Journées Ouvertes en bioinformatique et de la biostatistique francophone, Jul 2025, Bordeaux, France. 2025
Poster de conférence hal-05132787 v1
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Services deployed on the IFB National Network of Computing Resources (NNCR)

David Benaben , Christophe Blanchet , Matéo Boudet , Guillaume Brysbaert , Anthony Bretaudeau et al.
JOBIM 2024 - Journées ouvertes en biologie, informatique, et mathématiques, Jun 2024, Toulouse, France. , 2024
Poster de conférence hal-04618059 v1
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Exploring the richness of the French Galaxy Ecosystem

Bérénice Batut , Gildas Le Corguillé , Yvan Le Bras , Loraine Brillet-Guéguen , Fabien Mareuil et al.
GCC 2024 - Galaxy Community Conference, Jun 2024, Brno, Czech Republic. , pp.1-1, 2024, ⟨10.7490/f1000research.1119765.1⟩
Poster de conférence hal-04644779 v1

P06-18 Enhancing prediction and priorisation of adverse effects: TOXsIgN as a comprehensive resource for toxicogenomics

T. Darde , I. Kugathas , Matéo Boudet , Anthony Bretaudeau , R. Le Guével et al.
EUROTOX 2024 - 58th Congress of the European Societies of Toxicology, Sep 2024, Copenhagen, Denmark. pp.S159, 2024, ⟨10.1016/j.toxlet.2024.07.402⟩
Poster de conférence hal-04690377 v1
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Building a Distributed Computing Network for Galaxy, Application to Genome Annotation

Eva Mercier , Romane Libouban , Thomas Chaussepied , Anthony Bretaudeau
JOBIM 2024 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jun 2024, Toulouse, France. 2024
Poster de conférence hal-04694519 v1
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BIPAA, Bioinformatics Platform for the Agroecosystems Arthropods.

Stéphanie Robin , Fabrice Legeai , Anthony Bretaudeau
JOBIM 2023 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jun 2023, Plouzané (Brest Métropole), France. pp.1-1, 2023
Poster de conférence hal-04176786 v1
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AskoR, an R package for easy RNA-Seq data analysis.

Susete Alves Carvalho , Kévin Gazengel , Anthony Bretaudeau , Stéphanie Robin , Stéphanie Daval et al.
Journées Ouvertes en Biologie, Informatique et Mathématiques (Jobim), Jun 2023, Tours, France. pp.263, 2018, JOBIM2023. ⟨10.1080/02664763.2018.1454894⟩
Poster de conférence hal-04720296 v1
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AskoR, an R package for easy RNA-Seq data analysis illustrated by the analysis of plant/pathogen/microbiote interactions.

Susete Alves Carvalho , Kévin Gazengel , Masanelli Sylvin , Anthony Bretaudeau , Stéphanie Robin et al.
Journées Ouvertes en Biologie, Informatique et Mathématiques (Jobim), Jul 2022, Rennes, France
Poster de conférence hal-04720279 v1

BIPAA, Bioinformatics Platform for the Agroecosystems Arthropods.

Stéphanie Robin , Anthony Bretaudeau , Fabrice Legeai
The 11th international workshop on Molecular Biology and Genetics of the Lepidoptera, Aug 2022, Kolympari, Greece
Poster de conférence hal-04176792 v1
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Assessment of metabolic complementarity in large-scale microbiotas for the identification of key species

Clémence Frioux , Arnaud Belcour , Méziane Aite , Anthony Bretaudeau , Falk Hildebrand et al.
IHMC 2021 - 8th International Human Microbiome Consortium Congress, Jun 2021, Barcelone, Spain. pp.1
Poster de conférence hal-03438983 v1
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Metage2Metabo: metabolic complementarity applied to genomes of large-scale microbiotas for the identification of keystone species

Arnaud Belcour , Clémence Frioux , Méziane Aite , Anthony Bretaudeau , Falk Hildebrand et al.
JOBIM 2020 - Journées Ouvertes de Biologie, Informatique et Mathématique, Jun 2020, Montpellier / Virtual, France. ⟨10.1101/803056⟩
Poster de conférence hal-03151934 v1

Genomic and transcriptomic resources of two Lepidoptera: the Notodontidae Thaumetopoea pityocampa and the Crambidae Ostrinia scapulalis

Bernhard Gschloessl , Franck Dorkeld , Philippe Audiot , Anthony Bretaudeau , Christian Burban et al.
10. International Workshop on the Molecular Biology and Genetics of the Lepidoptera, Aug 2019, Crête, Greece.
Poster de conférence hal-02786428 v1

BIPAA, Bioinformatics Platform for the Agroecosystems Arthropods.

Stéphanie Robin , Anthony Bretaudeau , Fabrice Legeai
Journées Ouvertes en Biologie, Informatique et Mathématiques (JOBIM), Jul 2018, Marseille (FR), France
Poster de conférence hal-04176797 v1

Integration and query of biological datasets with Semantic Web technologies: AskOmics

Aurélie Evrard , Charles Bettembourg , Mélanie Jubault , Olivier Dameron , Olivier Filangi et al.
Journées Ouvertes Biologie, Informatique et Mathématiques (JOBIM 2016), Jun 2016, Lyon, France
Poster de conférence hal-01391087 v1
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Comparative genomic analysis of Clubroot resistance in the Brassicaceae family

Aurélie Evrard , Charles Bettembourg , Olivier Dameron , Olivier Filangi , Anthony Bretaudeau et al.
Brassica2016, Oct 2016, Melbourne, Australia.
Poster de conférence hal-01391707 v1
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Improvement of the assembly of heterozygous genomes of non-model organisms

Anaïs Gouin , Anthony Bretaudeau , Emmanuelle d'Alençon , Claire Lemaitre , Fabrice Legeai
Genome Informatics, Oct 2015, Cold Spring Harbor Laboratory, United States. 2015
Poster de conférence hal-01231793 v1
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Improvement of the assembly of heterozygous genomes of non-model organisms, a case study of the genomes of two Spodoptera frugiperda host strains

Anaïs Gouin , Anthony Bretaudeau , K Labadie , Jean-Marc Aury , Emmanuelle d'Alençon et al.
Arthropod Genomics 2015, Jun 2015, Manhattan (Kansas), United States. 2015
Poster de conférence hal-01240443 v1

e-Science in France, a Life science Western story

Yvan Le Bras , Aurélien Roult , Cyril Monjoeaud , Bahin Mathieu , Olivier Quenez et al.
Galaxy Community Conference (GCC2014), Jun 2014, Baltimore, United States
Poster de conférence hal-01102432 v1
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Identification and correction of genome mis-assemblies due to heterozygosity

Anaïs Gouin , Anthony Bretaudeau , Claire Lemaitre , Fabrice Legeai
European Conference on Computational Biology (ECCB), Sep 2014, Strasbourg, France. , ECCB 2014, 2014
Poster de conférence hal-01092959 v1

Dr Motifs: a web resource for pattern matching and discovery

Anthony Bretaudeau , Olivier Collin
JOBIM 2012, Jul 2012, Rennes, France
Poster de conférence hal-01102439 v1
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AnnotQTL: a new tool to gather functional and comparative information on a genomic region

Frédéric Lecerf , Anthony Bretaudeau , Olivier Sallou , Colette Désert , Yuna Blum et al.
12. Journées Ouvertes en Biologie, Informatique et Mathématiques, Jun 2011, Paris, France. 2011, JOBIM 2011
Poster de conférence hal-02746728 v1

Assemblage de génomes

Anthony Bretaudeau , Fabrice Legeai
Principes des techniques de biologie moléculaire et génomique : 3e édition revue et augmentée, Quae, 2018, Savoir Faire, 978-2-7592-2389-3
Chapitre d'ouvrage hal-03319003 v1

Galaxy

Anthony Bretaudeau
Principes des techniques de biologie moléculaire et génomique : 3e édition revue et augmentée, Quae, 2018, Savoir Faire, 978-2-7592-2389-3
Chapitre d'ouvrage hal-03319006 v1

Annotation de génomes

Anthony Bretaudeau
Principes des techniques de biologie moléculaire et génomique : 3e édition revue et augmentée, Quae, 2018, Savoir Faire, 978-2-7592-2389-3
Chapitre d'ouvrage hal-03319007 v1
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Identification of a viral gene essential for the genome replication of a domesticated endogenous virus in ichneumonid parasitoid wasps

Ange Lorenzi , Fabrice Legeai , Véronique Jouan , Pierre-Alain Girard , Michael R Strand et al.
2024
Pré-publication, Document de travail hal-04558930 v1

Spodoptera littoralis genome mining brings insights on the dynamic of expansion of gustatory receptors in polyphagous noctuidae

Camille Meslin , Pauline Mainet , Nicolas Montagné , Stéphanie Robin , Fabrice Legeai et al.
2021
Pré-publication, Document de travail hal-04706490 v1
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Chromosomal resolution reveals symbiotic virus colonization of parasitic wasp genomes

Jérémy Gauthier , Hélène Boulain , Joke J.F.A. van Vugt , Lyam Baudry , Emma Persyn et al.
2020
Pré-publication, Document de travail hal-03090838 v1
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Adaptation by copy number variation increases insecticide resistance in fall armyworms

Ki Woong Nam , Sylvie Gimenez , Frederique Hilliou , Carlos A Blanco , Sabine Hänniger et al.
2020
Pré-publication, Document de travail hal-02945633 v1
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Functional insights from the GC-poor genomes of two aphid parasitoids, <em>Aphidius ervi</em> and <em>Lysiphlebus fabarum</em>

Alice B. Dennis , Gabriel I. Ballesteros , Stéphanie Robin , Lukas Schrader , Jens Bast et al.
2019
Pré-publication, Document de travail (preprint/prepublication) hal-02788571 v1

Conserved and specific genomic features of endogenous polydnaviruses revealed by whole genome sequencing of two ichneumonid wasps

Fabrice Legeai , Bernardo F. Santos , Stéphanie Robin , Anthony Bretaudeau , Rebecca B. Dikow et al.
2019
Pré-publication, Document de travail (preprint/prepublication) hal-02788577 v1
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Genomic differentiation is initiated without physical linkage among targets of divergent selection in Fall armyworms

Ki Woong Nam , Sandra Nhim , Stéphanie Robin , Anthony Bretaudeau , Nicolas Nègre et al.
2018
Pré-publication, Document de travail (preprint/prepublication) hal-02788771 v1
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Community-Driven Data Analysis Training for Biology

Bérénice Batut , Saskia Hiltemann , Andrea Bagnacani , Dannon Baker , Vivek Bhardwaj et al.
2018
Pré-publication, Document de travail pasteur-02613129 v1
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Bioconda: A sustainable and comprehensive software distribution for the life sciences

Björn Grüning , Ryan Dale , Andreas Sjödin , Brad Chapman , Jillian Rowe et al.
2017
Pré-publication, Document de travail hal-04863967 v1

A clonally reproducing generalist aphid pest colonises diverse host plants by rapid transcriptional plasticity of duplicated gene clusters

Thomas Mathers , Yazhou Chen , Gemy Kaithakottil , Fabrice Legeai , Sam Mugford et al.
2020
Pré-publication, Document de travail (preprint/prepublication) hal-02936181 v1