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Auguste Genovesio

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Revealing invisible cell phenotypes with conditional generative modeling

Alexis Lamiable , Tiphaine Champetier , Francesco Leonardi , Ethan Cohen , Peter Sommer
Nature Communications, 2023, 14 (1), pp.6386. ⟨10.1038/s41467-023-42124-6⟩
Journal articles pasteur-04249530v1

Cell painting transfer increases screening hit rate

Ethan Cohen , Maxime Corbe , Cláudio Franco , Francisca Vasconcelos , Franck Perez
Biological Imaging, 2023, 3, pp.e4. ⟨10.1017/S2633903X23000077⟩
Journal articles hal-04081469v1
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Evolutionary analysis of DNA methyltransferases in microeukaryotes: Insights from the model diatom Phaeodactylum tricornutum

Antoine Hoguin , Ouardia Ait , Chris Bowler , Auguste Genovesio , Fabio Rocha Jimenez Vieira
BioRxiv, inPress
Journal articles hal-03388012v1
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Evolutionary analysis of DNA methyltransferases in microeukaryotes: Insights from the model diatom Phaeodactylum tricornutum

Leila Tirichine , Antoine Hoguin , Ouardia Ait Mohamed , Chris Bowler , Auguste Genovesio
bioRxiv : n'est pas une revue mais un serveur de preprint, inPress, ⟨10.1101/2021.06.11.447926⟩
Journal articles hal-03384427v1

Objective Comparison of High Throughput qPCR Data Analysis Methods

Marine Delagrange , Quentin Viautour , Juliette Pouch , Amine Ali Chaouche , Bertrand Ducos
Journal of Applied Bioinformatics & Computational Biology, 2021
Journal articles hal-04081354v1
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PhaeoNet: A Holistic RNAseq-Based Portrait of Transcriptional Coordination in the Model Diatom Phaeodactylum tricornutum

Ouardia Ait-Mohamed , Anna M G Novák Vanclová , Nathalie Joli , Yue Liang , Xue Zhao
Frontiers in Plant Science, 2020, 11, ⟨10.3389/fpls.2020.590949⟩
Journal articles hal-02997835v1

Unraveling spatial cellular pattern by computational tissue shuffling

Elise Laruelle , Nathalie Spassky , Auguste Genovesio
Communications Biology, 2020, 3 (1), pp.605. ⟨10.1038/s42003-020-01323-3⟩
Journal articles hal-04081359v1
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In vivo large-scale analysis of Drosophila neuronal calcium traces by automated tracking of single somata

Felipe Delestro , Lisa Scheunemann , Mélanie Pedrazzani , Paul Tchénio , Thomas Préat
Scientific Reports, 2020, 10 (1), pp.7153. ⟨10.1038/s41598-020-64060-x⟩
Journal articles inserm-02861603v1
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Coordination of transcriptional and translational regulations in human cells infected by Listeria monocytogenes

Vinko Besic , Fatemeh Habibolahi , Benoit Noel , Sebastian Rupp , Auguste Genovesio
RNA Biology, 2020, 17 (10), pp.1492-1507. ⟨10.1080/15476286.2020.1777380⟩
Journal articles hal-02308583v2
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Artificially decreasing cortical tension generates aneuploidy in mouse oocytes

Isma Bennabi , Flora Crozet , Elvira Nikalayevich , Agathe Chaigne , Gaëlle Letort
Nature Communications, 2020, 11, ⟨10.1038/s41467-020-15470-y⟩
Journal articles hal-03003434v1
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Genome wide natural variation of H3K27me3 selectively marks genes predicted to be important for cell differentiation in Phaeodactylum tricornutum

Xue Zhao , Achal Rastogi , Anne Flore Deton Cabanillas , Ouardia Ait Mohamed , Catherine Cantrel
New Phytologist, 2020, 229, pp.3208 - 3220. ⟨10.1111/nph.17129⟩
Journal articles hal-03384417v1
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Active Fluctuations of the Nuclear Envelope Shape the Transcriptional Dynamics in Oocytes

Maria Almonacid , Adel Al Jord , Stephany El-Hayek , Alice Othmani , Fanny Coulpier
Developmental Cell, 2019, 51 (2), pp.145-157.e10. ⟨10.1016/j.devcel.2019.09.010⟩
Journal articles hal-03003444v1
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ALFA: annotation landscape for aligned reads

Mathieu Bahin , Benoit Noel , Valentine Murigneux , Charles Bernard , Leila Bastianelli
BMC Genomics, 2019, 20 (250), pp.1-11. ⟨10.1186/s12864-019-5624-2⟩
Journal articles hal-02084432v1
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m5C Methylation Guides Systemic Transport of Messenger RNA over Graft Junctions in Plants

Lei Yang , Valentina Perrera , Eleftheria Saplaoura , Federico Apelt , Mathieu Bahin
Current Biology - CB, 2019, 29 (15), pp.2465-2476.e5. ⟨10.1016/j.cub.2019.06.042⟩
Journal articles hal-02345722v1
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Adult Neural Stem Cells and Multiciliated Ependymal Cells Share a Common Lineage Regulated by the Geminin Family Members

Gonzalo Ortiz-Álvarez , Marie Daclin , Asm Shihavuddin , Pauline Lansade , Aurélien Fortoul
Neuron, 2019, 102 (1), pp.159-172.e7. ⟨10.1016/j.neuron.2019.01.051⟩
Journal articles hal-02425373v1

PySpacell: A Python Package for Spatial Analysis of Cell Images

France Rose , Luca Rappez , Sergio Triana , Theodore Alexandrov , Auguste Genovesio
Cytometry Part A, 2019, ⟨10.1002/cyto.a.23955⟩
Journal articles hal-02425502v1
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Ependymal cilia beating induces an actin network to protect centrioles against shear stress

Alexia Mahuzier , Asm Shihavuddin , Clémence Fournier , Pauline Lansade , Marion Faucourt
Nature Communications, 2018, 9, pp.2279. ⟨10.1038/s41467-018-04676-w⟩
Journal articles hal-01822885v1

Compound Functional Prediction Using Multiple Unrelated Morphological Profiling Assays

France Rose , Sreetama Basu , Elton Rexhepaj , Anne Chauchereau , Elaine del Nery
SLAS TECHNOLOGY: Translating Life Sciences Innovation, 2018, 23 (3), pp.243-251. ⟨10.1177/2472630317740831⟩
Journal articles hal-02425375v1
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Monitored eCLIP: high accuracy mapping of RNA-protein interactions

Rémi Hocq , Janio Paternina , Quentin Alasseur , Auguste Genovesio , Hervé Le Hir
Nucleic Acids Research, 2018, 46 (21), pp.11553-11565. ⟨10.1093/nar/gky858⟩
Journal articles hal-02387433v1
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DET1-mediated degradation of a SAGA-like deubiquitination module controls H2Bub homeostasis

Amr Nassrallah , Martin Rougée , Clara Bourbousse , Stéphanie Drevensek , Sandra Fonseca
eLife, 2018, 7, pp.1-29. ⟨10.7554/eLife.37892⟩
Journal articles hal-01912108v1

High-Throughput Optical Mapping of Replicating DNA

Francesco de Carli , Nikita Menezes , Wahiba Berrabah , Valérie Barbe , Auguste Genovesio
Small Methods, 2018, 2 (9), pp.1800146. ⟨10.1002/smtd.201800146⟩
Journal articles hal-02361824v1

mTORC1 signaling and primary cilia are required for brain ventricle morphogenesis

Philippe Foerster , Marie Daclin , Shihavuddin Asm , Marion Faucourt , Alessandra Boletta
Development (Cambridge, England), 2017, 144 (2), pp.201-210. ⟨10.1242/dev.138271⟩
Journal articles hal-02425387v1

Smooth 2D manifold extraction from 3D image stack

Asm Shihavuddin , Sreetama Basu , Elton Rexhepaj , Felipe Delestro , Nikita Menezes
Nature Communications, 2017, 8 (1), ⟨10.1038/ncomms15554⟩
Journal articles hal-02425382v1

Calibrated mitotic oscillator drives motile ciliogenesis

Adel Al Jord , Asm Shihavuddin , Raphaël Servignat D’aout , Marion Faucourt , Auguste Genovesio
Science, 2017, 358 (6364), pp.803-806. ⟨10.1126/science.aan8311⟩
Journal articles hal-02425381v1

An RNAi Screen in a Novel Model of Oriented Divisions Identifies the Actin-Capping Protein Z β as an Essential Regulator of Spindle Orientation

Florencia Di Pietro , Léo Valon , Yingbo Li , Rosette Goïame , Auguste Genovesio
Current Biology - CB, 2017, 27 (16), pp.2452-2464.e8. ⟨10.1016/j.cub.2017.06.055⟩
Journal articles hal-02425384v1
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Detection and tracking of overlapping cell nuclei for large scale mitosis analyses

Yingbo Li , France Rose , Florencia Di Pietro , Xavier Morin , Auguste Genovesio
BMC Bioinformatics, 2016, 17 (1), ⟨10.1186/s12859-016-1030-9⟩
Journal articles hal-02425389v1
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High-Throughput In Vivo Genotoxicity Testing: An Automated Readout System for the Somatic Mutation and Recombination Test (SMART)

Benoit Lombardot , Chun-Taek Oh , Jihoon Kwak , Auguste Genovesio , Myungjoo Kang
PLoS ONE, 2015, 10 (4), pp.e0121287. ⟨10.1371/journal.pone.0121287⟩
Journal articles hal-02902069v1

Increasing the Content of High-Content Screening

Shantanu Singh , Anne Carpenter , Auguste Genovesio
Journal of Biomolecular Screening, 2014, 19 (5), pp.640-650. ⟨10.1177/1087057114528537⟩
Journal articles hal-02902065v1
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Dimerization, Oligomerization, and Aggregation of Human Amyotrophic Lateral Sclerosis Copper/Zinc Superoxide Dismutase 1 Protein Mutant Forms in Live Cells

Jiho Kim , Honggun Lee , Joo Hyun Lee , Do-Yoon Kwon , Auguste Genovesio
Journal of Biological Chemistry, 2014, 289 (21), pp.15094-15103. ⟨10.1074/jbc.M113.542613⟩
Journal articles hal-02902062v1

Development of a multiplex phenotypic cell-based high throughput screening assay to identify novel hepatitis C virus antivirals

Hee-Young Kim , Xiaolan Li , Christopher Jones , Charles Rice , Jean-Michel Garcia
Antiviral Research, 2013, 99 (1), pp.6-11. ⟨10.1016/j.antiviral.2013.04.020⟩
Journal articles hal-02915689v1

Comparison of Methods for Image-Based Profiling of Cellular Morphological Responses to Small-Molecule Treatment

Vebjorn Ljosa , Peter Caie , Rob ter Horst , Katherine Sokolnicki , Emma Jenkins
Journal of Biomolecular Screening, 2013, 18 (10), pp.1321-1329. ⟨10.1177/1087057113503553⟩
Journal articles hal-02902061v1
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Transcription Sites Are Developmentally Regulated during the Asexual Cycle of Plasmodium falciparum

Carolina Moraes , Thierry Dorval , Monica Contreras-Dominguez , Fernando de M. Dossin , Michael Hansen
PLoS ONE, 2013, 8 (2), pp.e55539. ⟨10.1371/journal.pone.0055539⟩
Journal articles hal-02902055v1
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An image-based high-content screening assay for compounds targeting intracellular Leishmania donovani amastigotes in human macrophages.

Jair L Siqueira-Neto , Seunghyun Moon , Jiyeon Jang , Gyongseon Yang , Changbok Lee
PLoS Neglected Tropical Diseases, 2012, 6 (6), pp.e1671. ⟨10.1371/journal.pntd.0001671⟩
Journal articles pasteur-00850256v1

A High-Content Subtractive Screen for Selecting Small Molecules Affecting Internalization of GPCRs

Yong-Jun Kwon , Weontae Lee , Auguste Genovesio , Neil Emans
Journal of Biomolecular Screening, 2012, 17 (3), pp.379-385. ⟨10.1177/1087057111427347⟩
Journal articles hal-02902053v1
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An image-based drug susceptibility assay targeting the placental sequestration of Plasmodium falciparum-infected erythrocytes.

Min-Je Ku , Fernando de M Dossin , Michael a E Hansen , Auguste Genovesio , Lawrence Ayong
PLoS ONE, 2012, 7 (8), pp.e41765. ⟨10.1371/journal.pone.0041765⟩
Journal articles pasteur-00850254v1
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A novel specific edge effect correction method for RNA interference screenings.

Jean-Philippe Carralot , Arnaud Ogier , Annette Boese , Auguste Genovesio , Priscille Brodin
Bioinformatics, 2012, 28 (2), pp.261-8. ⟨10.1093/bioinformatics/btr648⟩
Journal articles pasteur-00683849v1

Quantification of Protein Interaction in Living Cells by Two-Photon Spectral Imaging with Fluorescent Protein Fluorescence Resonance Energy Transfer Pair Devoid of Acceptor Bleed-Through

Jiho Kim , Xiaolan Li , Moon-Sik Kang , Kang-Bin Im , Auguste Genovesio
Cytometry Part A, 2012, 81A (2), pp.112-119. ⟨10.1002/cyto.a.21150⟩
Journal articles hal-02902050v1

Automated genome-wide visual profiling of cellular proteins involved in HIV infection.

Auguste Genovesio , Yong-Jun Kwon , Marc P Windisch , Nam Youl Kim , Seo Yeon Choi
Journal of Biomolecular Screening, 2011, 16 (9), pp.945-58. ⟨10.1177/1087057111415521⟩
Journal articles pasteur-01372491v1
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Visual Genome-Wide RNAi Screening to Identify Human Host Factors Required for Trypanosoma cruzi Infection

Auguste Genovesio , Miriam Giardini , Yong-Jun Kwon , Fernando de Macedo Dossin , Seo Yeon Choi
PLoS ONE, 2011, 6 (5), pp.e19733. ⟨10.1371/journal.pone.0019733⟩
Journal articles hal-02902036v1
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High Content Phenotypic Cell-Based Visual Screen Identifies Mycobacterium tuberculosis Acyltrehalose-Containing Glycolipids Involved in Phagosome Remodeling

Priscille Brodin , Yannick Poquet , Florence Levillain , Isabelle Peguillet , Gerald Larrouy-Maumus
PLoS Pathogens, 2010, 6 (9), pp.e1001100. ⟨10.1371/journal.ppat.1001100⟩
Journal articles hal-02902031v1

Contextual Automated 3D Analysis of Subcellular Organelles Adapted to High-Content Screening

Thierry Dorval , Arnaud Ogier , Auguste Genovesio , Hye Kuyon Lim , Do Yoon Kwon
Journal of Biomolecular Screening, 2010, 15 (7), pp.847-857. ⟨10.1177/1087057110374993⟩
Journal articles hal-02902029v1

A modified fluorescence in situ hybridization protocol for Plasmodium falciparum greatly improves nuclear architecture conservation

Monica Contreras-Dominguez , Carolina Borsoi Moraes , Thierry Dorval , Auguste Genovesio , Fernando de Macedo Dossin
Molecular and Biochemical Parasitology, 2010, 173 (1), pp.48-52. ⟨10.1016/j.molbiopara.2010.04.006⟩
Journal articles hal-02902034v1
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Antileishmanial high-throughput drug screening reveals drug candidates with new scaffolds.

Jair L Siqueira-Neto , Ok-Ryul Song , Hyunrim Oh , Jeong-Hun Sohn , Gyongseon Yang
PLoS Neglected Tropical Diseases, 2010, 4 (5), pp.e675. ⟨10.1371/journal.pntd.0000675⟩
Journal articles pasteur-00696809v1
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Automated high-throughput siRNA transfection in raw 264.7 macrophages: a case study for optimization procedure.

Jean-Philippe Carralot , Tae-Kyu Kim , Boris Lenseigne , Annette S Boese , Peter Sommer
Journal of Biomolecular Screening, 2009, 14 (2), pp.151-60. ⟨10.1177/1087057108328762⟩
Journal articles pasteur-00683854v1
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In Vivo Colocalisation of oskar mRNA and Trans-Acting Proteins Revealed by Quantitative Imaging of the Drosophila Oocyte

Musa M. Mhlanga , Diana P. Bratu , Auguste Genovesio , Agata Rybarska , Nicolas Chenouard
PLoS ONE, 2009, 4 (7), pp.e6241. ⟨10.1371/journal.pone.0006241⟩
Journal articles hal-02902016v1
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High Content Screening Identifies Decaprenyl-Phosphoribose 2′ Epimerase as a Target for Intracellular Antimycobacterial Inhibitors

Thierry Christophe , Mary Jackson , Hee Kyoung Jeon , Denis Fenistein , Monica Contreras-Dominguez
PLoS Pathogens, 2009, 5 (10), pp.e1000645. ⟨10.1371/journal.ppat.1000645⟩
Journal articles hal-02902018v1

Automated Nuclear Analysis of Leishmania major Telomeric Clusters Reveals Changes in Their Organization during the Parasite's Life Cycle

Fernando de M. Dossin , Alexandre Dufour , Elodie Dusch , Jair Siqueira-Neto , Carolina Moraes
PLoS ONE, 2008, 3 (6), pp.e2313. ⟨10.1371/journal.pone.0002313⟩
Journal articles hal-04081334v1

A Fast, Fully Automated Cell Segmentation Algorithm for High-Throughput and High-Content Screening

D. Fenistein , B. Lenseigne , T. Christophe , P. Brodin , Auguste Genovesio
Cytometry Part A, 2008, 73A (10), pp.958-964. ⟨10.1002/cyto.a.20627⟩
Journal articles hal-02902007v1
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Three-dimensional point spread function model for line-scanning confocal microscope with high-aperture objective

E. Dusch , T. Dorval , N. Vincent , M. Wachsmuth , Auguste Genovesio
Journal of Microscopy, 2007, 228 (2), pp.132 - 138. ⟨10.1111/j.1365-2818.2007.01844.x⟩
Journal articles hal-02901997v1

High-Content Classification of Nucleocytoplasmic Import or Export Inhibitors

Yong-Jun Kwon , Auguste Genovesio , Nam Youl Kim , Hi Chul Kim , Sungyong Jung
Journal of Biomolecular Screening, 2007, 12 (5), pp.621-627. ⟨10.1177/1087057107301319⟩
Journal articles hal-02425950v1

Multiple particle tracking in 3-D+t microscopy: method and application to the tracking of endocytosed quantum dots

Auguste Genovesio , T. Liedl , V. Emiliani , W.J. Parak , M. Coppey-Moisan
IEEE Transactions on Image Processing, 2006, 15 (5), pp.1062-1070. ⟨10.1109/TIP.2006.872323⟩
Journal articles hal-02425944v1
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SAGA interacting factors confine sub-diffusion of transcribed genes to the nuclear envelope.

Ghislain G Cabal , Auguste Genovesio , Susana Rodriguez-Navarro , Christophe Zimmer , Olivier Gadal
Nature, 2006, 441 (7094), pp.770-3. ⟨10.1038/nature04752⟩
Journal articles pasteur-00207343v1

Quantitative four-dimensional tracking of cytoplasmic and nuclear HIV-1 complexes

Nathalie Arhel , Auguste Genovesio , Kim Ka , Sarah Miko , Emmanuelle Perret
Nature Methods, 2006, 3 (10), pp.817-824. ⟨10.1038/nmeth928⟩
Journal articles pasteur-00163778v1

Telomere tethering at the nuclear periphery is essential for efficient DNA double strand break repair in subtelomeric region

Pierre Therizols , Cécile Fairhead , Ghislain Cabal , Auguste Genovesio , Jean-Christophe Olivo-Marin
Journal of Cell Biology, 2006, 172 (2), pp.189-199. ⟨10.1083/jcb.200505159⟩
Journal articles hal-02425531v1
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Cerebral microcirculation shear stress levels determine Neisseria meningitidis attachment sites along the blood–brain barrier

Emilie Mairey , Auguste Genovesio , Emmanuel Donnadieu , Christine Bernard , Francis Jaubert
Journal of Experimental Medicine, 2006, 203 (8), pp.1939-1950. ⟨10.1084/jem.20060482⟩
Journal articles hal-02425940v1

Non-Convex Cell Epithelial Modeling Unveils Cellular Interactions

Elise Laruelle , Auguste Genovesio
2022 IEEE 19th International Symposium on Biomedical Imaging (ISBI), Mar 2022, Kolkata, India. pp.1-5, ⟨10.1109/ISBI52829.2022.9761452⟩
Conference papers hal-04081371v1
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Super-Resolution through StyleGAN Regularized Latent Search

Marzieh Gheisari , Auguste Genovesio
36th Conference on Neural Information Processing Systems (NeurIPS 2022). NeurIPS - Self-Supervised Learning - Theory and Practice, Nov 2022, New Orleans, United States
Conference papers hal-04081416v1
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Unpaired Image-to-Image Translation with Limited Data to Reveal Subtle Phenotypes

Anis Bourou , Kevin Daupin , Veronique Dubreuil , Aurélie de Thonel , Valerie Mezger-Lallemand
Thirty-sixth Conference on Neural Information Processing Systems (NeurIPS 202), Nov 2022, La Nouvelle Orléans, LA, United States
Conference papers hal-04081464v1

SAVGAN: Self-Attention Based Generation of Tumour on Chip Videos

Sandeep Manandhar , Irina Veith , Maria Carla Parrini , Auguste Genovesio
2022 IEEE 19th International Symposium on Biomedical Imaging (ISBI), Mar 2022, Kolkata, India. pp.1-5, ⟨10.1109/ISBI52829.2022.9761518⟩
Conference papers hal-04081376v1

Comparison of Semi-supervised Learning Methods for High Content Screening Quality Control

Umar Masud , Ethan Cohen , Ihab Bendidi , Guillaume Bollot , Auguste Genovesio
ECCV 2022, 2022, Tel Aviv, Israël, France. pp.395-405, ⟨10.1007/978-3-031-25069-9_26⟩
Conference papers hal-04081398v1

A Method For Discontinuous Neurite Reconstruction Based On Diffusion Tensor, Hessian Eigenvector, And Diffused Gradient Vector Fields

Heechang Kim , Georges Stamon , Auguste Genovesio
2011 18th IEEE International Conference on Image Processing (ICIP 2011), Sep 2011, Brussels, France. pp.1401-1404, ⟨10.1109/ICIP.2011.6115702⟩
Conference papers hal-02902039v1

Spatially Adaptive Relaxation For Active Contour Cell Segmentation

Arnaud Ogier , T. Dorval , B. Kim , Auguste Genovesio
2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Apr 2010, Rotterdam, France. pp.1033-1036, ⟨10.1109/ISBI.2010.5490166⟩
Conference papers hal-02902025v1

3D Spatial Drift Correction Using Kalman Filtering For Fluorescence Based Imaging

T. Dorval , Cb. Moraes , Arnaud Ogier , L.H. Freitas , Auguste Genovesio
2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI), Jun 2009, Boston, France. pp.1119-1122, ⟨10.1109/ISBI.2009.5193253⟩
Conference papers hal-02902013v1

Active Vector Graph For Regularized Tesselation

Auguste Genovesio
2009 16th IEEE International Conference on Image Processing ICIP 2009, Nov 2009, Cairo, France. pp.2429-2432, ⟨10.1109/ICIP.2009.5414154⟩
Conference papers hal-02902022v1

Neuron Branch Detection And Description Using Random Walk

Hee Chang Kim , Auguste Genovesio
2009 Annual International Conference of the IEEE Engineering in Medicine and Biology Society, Sep 2009, Minneapolis, France. pp.1020-1023, ⟨10.1109/IEMBS.2009.5334083⟩
Conference papers hal-02902010v1
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IM.Grid, a Grid Computing Approach for Image Mining of High Throughput-High Content Screening

Hongkee Moon , Auguste Genovesio
2008 9th IEEE/ACM International Conference on Grid Computing (GRID), Sep 2008, Tsukuba, France. pp.334-339, ⟨10.1109/GRID.2008.4662818⟩
Conference papers hal-02902005v1

INHOMOGENEOUS DECONVOLUTION IN A BIOLOGICAL IMAGES CONTEXT

Arnaud Ogier , T. Dorval , Auguste Genovesio
2008 5th IEEE International Symposium on Biomedical Imaging (ISBI 2008), May 2008, Paris, France. pp.744-747, ⟨10.1109/ISBI.2008.4541103⟩
Conference papers hal-02901998v1

3D Automated Nuclear Morphometric Analysis Using Active Meshes

Alexandre Dufour , Joohyun Lee , Nicole Vincent , Régis Grailhe , Auguste Genovesio
Pattern Recognition in Bioinformatics. PRIB. Lecture Notes in Computer Science, Oct 2007, Singapore, Singapore. pp.356-367, ⟨10.1007/978-3-540-75286-8_34⟩
Conference papers hal-02426368v1

Biased Image Correction Based on Empirical Mode Decomposition

Arnaud Ogier , T. Dorval , Auguste Genovesio
2007 IEEE International Conference on Image Processing, Sep 2007, San Antonio, France. pp.I - 533-I - 536, ⟨10.1109/ICIP.2007.4379009⟩
Conference papers hal-02901982v1

A New Color Representation for Intensity Independent Pixel Classification in Confocal Microscopy Images

Boris Lenseigne , Thierry Dorval , Arnaud Ogier , Auguste Genovesio
Advanced Concepts for Intelligent Vision Systems. ACIVS 2007. Lecture Notes in Computer Science, Aug 2007, Delft, Netherlands. pp.597-606, ⟨10.1007/978-3-540-74607-2_54⟩
Conference papers hal-02425953v1

Support vector machines for automatic detection of tuberculosis bacteria in confocal microscopy images

Boris Lenseigne , Priscille Brodin , Hee Jeon , Christophe Thierry , Auguste Genovesio
2007 4th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Apr 2007, Arlington, France. pp.85-88, ⟨10.1109/ISBI.2007.356794⟩
Conference papers hal-02425948v1

3D Fluorescent Spots Detection in Line-Scanning Confocal Microscopy

E. Dusch , N. Vincent , Auguste Genovesio
2007 IEEE International Conference on Image Processing, Sep 2007, San Antonio, France. pp.VI - 241-VI - 244, ⟨10.1109/ICIP.2007.4379566⟩
Conference papers hal-02426311v1

3D Mumford-Shah Based Active Mesh

Alexandre Dufour , Nicole Vincent , Auguste Genovesio
Progress in Pattern Recognition, Image Analysis and Applications. CIARP 2006. Lecture Notes in Computer Science, Nov 2006, Cancun, Mexico. pp.208-217, ⟨10.1007/11892755_21⟩
Conference papers hal-02425946v1

Automated Confocal Microscope Bias Correction

Thierry Dorval , Auguste Genovesio
INFORMATION OPTICS: 5th International Workshop on Information Optics (WIO'06), Oct 2006, Toledo (Spain), France. pp.463-470, ⟨10.1063/1.2361251⟩
Conference papers hal-02425945v1

Adaptive gating in gaussian bayesian multi-target tracking

Auguste Genovesio , Z. Belhassine , J.-C. Olivo-Marin
2004 International Conference on Image Processing, 2004. ICIP '04., Apr 2005, Singapore, France. pp.147-150, ⟨10.1109/ICIP.2004.1418711⟩
Conference papers hal-02425525v1

Adaptive gating in gaussian bayesian multi-target tracking

Auguste Genovesio , Z. Belhassine , J.-C. Olivo-Marin
2004 International Conference on Image Processing, 2004. ICIP '04., Oct 2004, Singapore, France. pp.147-150, ⟨10.1109/ICIP.2004.1418711⟩
Conference papers hal-04081092v1

Split and merge data association filter for dense multi-target tracking

Auguste Genovesio , Jean-Christophe Olivo-Marin
International Conference on Pattern Recognition ICPR, Aug 2004, Cambridge, United Kingdom
Conference papers hal-02425520v1

Interacting multiple model based method to track moving fluorescent biological spots

Auguste Genovesio , Bo Zhang , J.-C. Olivo-Marin
2004 2nd IEEE International Symposium on Biomedical Imaging: Macro to Nano, Apr 2004, Arlington, United States. pp.1239-1242, ⟨10.1109/ISBI.2004.1398769⟩
Conference papers hal-02425514v1

Tracking fluroescent spots in biological video microscopy

Auguste Genovesio , Jean-Christophe Olivo-Marin
Biomedical Optics 2003, Jul 2003, San Jose, United States. pp.98, ⟨10.1117/12.478040⟩
Conference papers hal-02425506v1

Tracking of multiple fluorescent biological objects in three dimensional video microscopy

Auguste Genovesio , B. Zhang , J.-C. Olivo-Marin
International Conference on Image Processing, Sep 2003, Barcelona, France. pp.I-1105-8, ⟨10.1109/ICIP.2003.1247160⟩
Conference papers hal-02425510v1

Automated Identification and Analysis of Visual Micro-experiments on Cellular Microarray

Auguste Genovesio
Advances in Bio-Imaging: From Physics to Signal Understanding, pp.27-33, 2012, ⟨10.1007/978-3-642-25547-2_3⟩
Book sections hal-02902046v1

Bias Image Correction Via Stationarity Maximization

T. Dorval , Arnaud Ogier , Auguste Genovesio
Medical Image Computing and Computer-Assisted Intervention – MICCAI 2007, 4792, Springer Berlin Heidelberg; Springer Berlin Heidelberg, pp.693-700, 2007, Lecture Notes in Computer Science, ⟨10.1007/978-3-540-75759-7_84⟩
Book sections hal-02901994v1