Auguste Genovesio

Publications

Article dans une revue (61)

Large scale compound selection guided by cell painting reveals activity cliffs and functional relationships Maxime Sanchez,Nicolas Bourriez,Ihab Bendidi,Ethan Cohen,Ivan Svatkoet al. Communications Biology, 2026, 9 (1), pp.225. ⟨10.1038/s42003-025-09500-y⟩ Article dans une revue hal-05501580v1
Pharmacogenomic Characterization of a Large Cohort of Patient-Derived Cell Lines Identifies Therapeutic Strategies for Pleural Mesothelioma. Jean-Baptiste Assié,Clément Meiller,Esther Stern,Julie Lasvergnas,Maya Arnouldet al. Cancer Research, 2025, ⟨10.1158/0008-5472.can-24-3822⟩ Article dans une revue hal-05347415v1
mTOR controls ependymal cell differentiation by targeting the alternative cell cycle and centrosomal proteins Alexia Bankolé,Ayush Srivastava,Asm Shihavuddin,Khaled Tighanimine,Marion Faucourtet al. EMBO Reports, 2025, 26 (12), pp.3075-3105. ⟨10.1038/s44319-025-00460-2⟩ Article dans une revue hal-05462373v1
In vivo autofluorescence lifetime imaging of the Drosophila brain captures metabolic shifts associated with memory formation Philémon Roussel,Mingyi Zhou,Chiara Stringari,Thomas Preat,Pierre-Yves Plaçaiset al. eLife, 2025, ⟨10.7554/eLife.106040.1⟩ Article dans une revue hal-05462359v1
Reconstructing Interpretable Features in Computational Super-Resolution microscopy via Regularized Latent Search Marzieh Gheisari,Auguste Genovesio Biological Imaging, 2024, pp.1-20. ⟨10.1017/S2633903X24000084⟩ Article dans une revue hal-05462348v1
Exploring self-supervised learning biases for microscopy image representation Ihab Bendidi,Adrien Bardes,Ethan Cohen,Alexis Lamiable,Guillaume Bollotet al. Biological Imaging, 2024, 4, pp.e12. ⟨10.1017/S2633903X2400014X⟩ Article dans une revue hal-05462356v1
Cell painting transfer increases screening hit rate Ethan Cohen,Maxime Corbe,Cláudio Franco,Francisca Vasconcelos,Franck Perezet al. Biological Imaging, 2023, 3, pp.e4. ⟨10.1017/S2633903X23000077⟩ Article dans une revue hal-04081469v1
Revealing invisible cell phenotypes with conditional generative modeling Alexis Lamiable,Tiphaine Champetier,Francesco Leonardi,Ethan Cohen,Peter Sommeret al. Nature Communications, 2023, 14 (1), pp.6386. ⟨10.1038/s41467-023-42124-6⟩ Article dans une revue pasteur-04249530v1
Objective Comparison of High Throughput qPCR Data Analysis Methods Marine Delagrange,Quentin Viautour,Juliette Pouch,Amine Ali Chaouche,Bertrand Ducoset al. Journal of Applied Bioinformatics & Computational Biology, 2021 Article dans une revue hal-04081354v1
Evolutionary analysis of DNA methyltransferases in microeukaryotes: Insights from the model diatom Phaeodactylum tricornutum Leila Tirichine,Antoine Hoguin,Ouardia Ait Mohamed,Chris Bowler,Auguste Genovesioet al. BioRxiv, In press, ⟨10.1101/2021.06.11.447926⟩ Article dans une revue hal-03384427v1
Evolutionary analysis of DNA methyltransferases in microeukaryotes: Insights from the model diatom Phaeodactylum tricornutum Antoine Hoguin,Ouardia Ait,Chris Bowler,Auguste Genovesio,Fabio Rocha Jimenez Vieiraet al. BioRxiv, In press Article dans une revue hal-03388012v1
Unraveling spatial cellular pattern by computational tissue shuffling Elise Laruelle,Nathalie Spassky,Auguste Genovesio Communications Biology, 2020, 3 (1), pp.605. ⟨10.1038/s42003-020-01323-3⟩ Article dans une revue hal-04081359v1
Genome wide natural variation of H3K27me3 selectively marks genes predicted to be important for cell differentiation in Phaeodactylum tricornutum Xue Zhao,Achal Rastogi,Anne Flore Deton Cabanillas,Ouardia Ait Mohamed,Catherine Cantrelet al. New Phytologist, 2020, 229, pp.3208 - 3220. ⟨10.1111/nph.17129⟩ Article dans une revue hal-03384417v1
Artificially decreasing cortical tension generates aneuploidy in mouse oocytes Isma Bennabi,Flora Crozet,Elvira Nikalayevich,Agathe Chaigne,Gaëlle Letortet al. Nature Communications, 2020, 11, ⟨10.1038/s41467-020-15470-y⟩ Article dans une revue hal-03003434v1
In vivo large-scale analysis of Drosophila neuronal calcium traces by automated tracking of single somata Felipe Delestro,Lisa Scheunemann,Mélanie Pedrazzani,Paul Tchénio,Thomas Préatet al. Scientific Reports, 2020, 10 (1), pp.7153. ⟨10.1038/s41598-020-64060-x⟩ Article dans une revue inserm-02861603v1
Coordination of transcriptional and translational regulations in human cells infected by Listeria monocytogenes Vinko Besic,Fatemeh Habibolahi,Benoit Noel,Sebastian Rupp,Auguste Genovesioet al. RNA Biology, 2020, 17 (10), pp.1492-1507. ⟨10.1080/15476286.2020.1777380⟩ Article dans une revue hal-02308583v2
PhaeoNet: A Holistic RNAseq-Based Portrait of Transcriptional Coordination in the Model Diatom Phaeodactylum tricornutum Ouardia Ait-Mohamed,Anna M G Novák Vanclová,Nathalie Joli,Yue Liang,Xue Zhaoet al. Frontiers in Plant Science, 2020, 11, ⟨10.3389/fpls.2020.590949⟩ Article dans une revue hal-02997835v1
m&lt;sup&gt;5&lt;/sup&gt;C Methylation Guides Systemic Transport of Messenger RNA over Graft Junctions in Plants Lei Yang,Valentina Perrera,Eleftheria Saplaoura,Federico Apelt,Mathieu Bahinet al. Current Biology, 2019, 29 (15), pp.2465-2476.e5. ⟨10.1016/j.cub.2019.06.042⟩ Article dans une revue hal-02345722v1
PySpacell: A Python Package for Spatial Analysis of Cell Images France Rose,Luca Rappez,Sergio Triana,Theodore Alexandrov,Auguste Genovesio Cytometry Part A, 2019, ⟨10.1002/cyto.a.23955⟩ Article dans une revue hal-02425502v1
Adult Neural Stem Cells and Multiciliated Ependymal Cells Share a Common Lineage Regulated by the Geminin Family Members Gonzalo Ortiz-Álvarez,Marie Daclin,Asm Shihavuddin,Pauline Lansade,Aurélien Fortoulet al. Neuron, 2019, 102 (1), pp.159-172.e7. ⟨10.1016/j.neuron.2019.01.051⟩ Article dans une revue hal-02425373v1
Active Fluctuations of the Nuclear Envelope Shape the Transcriptional Dynamics in Oocytes Maria Almonacid,Adel Al Jord,Stephany El-Hayek,Alice Othmani,Fanny Coulpieret al. Developmental Cell, 2019, 51 (2), pp.145-157.e10. ⟨10.1016/j.devcel.2019.09.010⟩ Article dans une revue hal-03003444v1
ALFA: annotation landscape for aligned reads Mathieu Bahin,Benoit Noel,Valentine Murigneux,Charles Bernard,Leila Bastianelliet al. BMC Genomics, 2019, 20 (250), pp.1-11. ⟨10.1186/s12864-019-5624-2⟩ Article dans une revue hal-02084432v1
Monitored eCLIP: high accuracy mapping of RNA-protein interactions Rémi Hocq,Janio Paternina,Quentin Alasseur,Auguste Genovesio,Hervé Le Hir Nucleic Acids Research, 2018, 46 (21), pp.11553-11565. ⟨10.1093/nar/gky858⟩ Article dans une revue hal-02387433v1
DET1-mediated degradation of a SAGA-like deubiquitination module controls H2Bub homeostasis Amr Nassrallah,Martin Rougée,Clara Bourbousse,Stéphanie Drevensek,Sandra Fonsecaet al. eLife, 2018, 7, pp.1-29. ⟨10.7554/eLife.37892⟩ Article dans une revue hal-01912108v1
High-Throughput Optical Mapping of Replicating DNA Francesco de Carli,Nikita Menezes,Wahiba Berrabah,Valérie Barbe,Auguste Genovesioet al. Small Methods, 2018, 2 (9), pp.1800146. ⟨10.1002/smtd.201800146⟩ Article dans une revue hal-02361824v1
Compound Functional Prediction Using Multiple Unrelated Morphological Profiling Assays France Rose,Sreetama Basu,Elton Rexhepaj,Anne Chauchereau,Elaine del Neryet al. SLAS TECHNOLOGY: Translating Life Sciences Innovation, 2018, 23 (3), pp.243-251. ⟨10.1177/2472630317740831⟩ Article dans une revue hal-02425375v1
Ependymal cilia beating induces an actin network to protect centrioles against shear stress Alexia Mahuzier,Asm Shihavuddin,Clémence Fournier,Pauline Lansade,Marion Faucourtet al. Nature Communications, 2018, 9, pp.2279. ⟨10.1038/s41467-018-04676-w⟩ Article dans une revue hal-01822885v1
Smooth 2D manifold extraction from 3D image stack Asm Shihavuddin,Sreetama Basu,Elton Rexhepaj,Felipe Delestro,Nikita Menezeset al. Nature Communications, 2017, 8 (1), ⟨10.1038/ncomms15554⟩ Article dans une revue hal-02425382v1
Calibrated mitotic oscillator drives motile ciliogenesis Adel Al Jord,Asm Shihavuddin,Raphaël Servignat D’aout,Marion Faucourt,Auguste Genovesioet al. Science, 2017, 358 (6364), pp.803-806. ⟨10.1126/science.aan8311⟩ Article dans une revue hal-02425381v1
An RNAi Screen in a Novel Model of Oriented Divisions Identifies the Actin-Capping Protein Z β as an Essential Regulator of Spindle Orientation Florencia Di Pietro,Léo Valon,Yingbo Li,Rosette Goïame,Auguste Genovesioet al. Current Biology, 2017, 27 (16), pp.2452-2464.e8. ⟨10.1016/j.cub.2017.06.055⟩ Article dans une revue hal-02425384v1
mTORC1 signaling and primary cilia are required for brain ventricle morphogenesis Philippe Foerster,Marie Daclin,Shihavuddin Asm,Marion Faucourt,Alessandra Bolettaet al. Development (Cambridge, England), 2017, 144 (2), pp.201-210. ⟨10.1242/dev.138271⟩ Article dans une revue hal-02425387v1
Detection and tracking of overlapping cell nuclei for large scale mitosis analyses Yingbo Li,France Rose,Florencia Di Pietro,Xavier Morin,Auguste Genovesio BMC Bioinformatics, 2016, 17 (1), ⟨10.1186/s12859-016-1030-9⟩ Article dans une revue hal-02425389v1
High-Throughput In Vivo Genotoxicity Testing: An Automated Readout System for the Somatic Mutation and Recombination Test (SMART) Benoit Lombardot,Chun-Taek Oh,Jihoon Kwak,Auguste Genovesio,Myungjoo Kanget al. PLoS ONE, 2015, 10 (4), pp.e0121287. ⟨10.1371/journal.pone.0121287⟩ Article dans une revue hal-02902069v1
Increasing the Content of High-Content Screening Shantanu Singh,Anne Carpenter,Auguste Genovesio Journal of Biomolecular Screening, 2014, 19 (5), pp.640-650. ⟨10.1177/1087057114528537⟩ Article dans une revue hal-02902065v1
Dimerization, Oligomerization, and Aggregation of Human Amyotrophic Lateral Sclerosis Copper/Zinc Superoxide Dismutase 1 Protein Mutant Forms in Live Cells Jiho Kim,Honggun Lee,Joo Hyun Lee,Do-Yoon Kwon,Auguste Genovesioet al. Journal of Biological Chemistry, 2014, 289 (21), pp.15094-15103. ⟨10.1074/jbc.M113.542613⟩ Article dans une revue hal-02902062v1
Transcription Sites Are Developmentally Regulated during the Asexual Cycle of Plasmodium falciparum Carolina Moraes,Thierry Dorval,Monica Contreras-Dominguez,Fernando de M. Dossin,Michael Hansenet al. PLoS ONE, 2013, 8 (2), pp.e55539. ⟨10.1371/journal.pone.0055539⟩ Article dans une revue hal-02902055v1
Comparison of Methods for Image-Based Profiling of Cellular Morphological Responses to Small-Molecule Treatment Vebjorn Ljosa,Peter Caie,Rob ter Horst,Katherine Sokolnicki,Emma Jenkinset al. Journal of Biomolecular Screening, 2013, 18 (10), pp.1321-1329. ⟨10.1177/1087057113503553⟩ Article dans une revue hal-02902061v1
Development of a multiplex phenotypic cell-based high throughput screening assay to identify novel hepatitis C virus antivirals Hee-Young Kim,Xiaolan Li,Christopher Jones,Charles Rice,Jean-Michel Garciaet al. Antiviral Research, 2013, 99 (1), pp.6-11. ⟨10.1016/j.antiviral.2013.04.020⟩ Article dans une revue hal-02915689v1
A High-Content Subtractive Screen for Selecting Small Molecules Affecting Internalization of GPCRs Yong-Jun Kwon,Weontae Lee,Auguste Genovesio,Neil Emans Journal of Biomolecular Screening, 2012, 17 (3), pp.379-385. ⟨10.1177/1087057111427347⟩ Article dans une revue hal-02902053v1
Quantification of Protein Interaction in Living Cells by Two-Photon Spectral Imaging with Fluorescent Protein Fluorescence Resonance Energy Transfer Pair Devoid of Acceptor Bleed-Through Jiho Kim,Xiaolan Li,Moon-Sik Kang,Kang-Bin Im,Auguste Genovesioet al. Cytometry Part A, 2012, 81A (2), pp.112-119. ⟨10.1002/cyto.a.21150⟩ Article dans une revue hal-02902050v1
A novel specific edge effect correction method for RNA interference screenings. Jean-Philippe Carralot,Arnaud Ogier,Annette Boese,Auguste Genovesio,Priscille Brodinet al. Bioinformatics, 2012, 28 (2), pp.261-8. ⟨10.1093/bioinformatics/btr648⟩ Article dans une revue pasteur-00683849v1
An image-based drug susceptibility assay targeting the placental sequestration of Plasmodium falciparum-infected erythrocytes. Min-Je Ku,Fernando de M Dossin,Michael a E Hansen,Auguste Genovesio,Lawrence Ayonget al. PLoS ONE, 2012, 7 (8), pp.e41765. ⟨10.1371/journal.pone.0041765⟩ Article dans une revue pasteur-00850254v1
An image-based high-content screening assay for compounds targeting intracellular Leishmania donovani amastigotes in human macrophages. Jair L Siqueira-Neto,Seunghyun Moon,Jiyeon Jang,Gyongseon Yang,Changbok Leeet al. PLoS Neglected Tropical Diseases, 2012, 6 (6), pp.e1671. ⟨10.1371/journal.pntd.0001671⟩ Article dans une revue pasteur-00850256v1
Visual Genome-Wide RNAi Screening to Identify Human Host Factors Required for Trypanosoma cruzi Infection Auguste Genovesio,Miriam Giardini,Yong-Jun Kwon,Fernando de Macedo Dossin,Seo Yeon Choiet al. PLoS ONE, 2011, 6 (5), pp.e19733. ⟨10.1371/journal.pone.0019733⟩ Article dans une revue hal-02902036v1
Automated genome-wide visual profiling of cellular proteins involved in HIV infection. Auguste Genovesio,Yong-Jun Kwon,Marc P Windisch,Nam Youl Kim,Seo Yeon Choiet al. Journal of Biomolecular Screening, 2011, 16 (9), pp.945-58. ⟨10.1177/1087057111415521⟩ Article dans une revue pasteur-01372491v1
A modified fluorescence in situ hybridization protocol for Plasmodium falciparum greatly improves nuclear architecture conservation Monica Contreras-Dominguez,Carolina Borsoi Moraes,Thierry Dorval,Auguste Genovesio,Fernando de Macedo Dossinet al. Molecular and Biochemical Parasitology, 2010, 173 (1), pp.48-52. ⟨10.1016/j.molbiopara.2010.04.006⟩ Article dans une revue hal-02902034v1
Antileishmanial high-throughput drug screening reveals drug candidates with new scaffolds. Jair L Siqueira-Neto,Ok-Ryul Song,Hyunrim Oh,Jeong-Hun Sohn,Gyongseon Yanget al. PLoS Neglected Tropical Diseases, 2010, 4 (5), pp.e675. ⟨10.1371/journal.pntd.0000675⟩ Article dans une revue pasteur-00696809v1
High Content Phenotypic Cell-Based Visual Screen Identifies Mycobacterium tuberculosis Acyltrehalose-Containing Glycolipids Involved in Phagosome Remodeling Priscille Brodin,Yannick Poquet,Florence Levillain,Isabelle Peguillet,Gerald Larrouy-Maumuset al. PLoS Pathogens, 2010, 6 (9), pp.e1001100. ⟨10.1371/journal.ppat.1001100⟩ Article dans une revue hal-02902031v1
Contextual Automated 3D Analysis of Subcellular Organelles Adapted to High-Content Screening Thierry Dorval,Arnaud Ogier,Auguste Genovesio,Hye Kuyon Lim,Do Yoon Kwonet al. Journal of Biomolecular Screening, 2010, 15 (7), pp.847-857. ⟨10.1177/1087057110374993⟩ Article dans une revue hal-02902029v1
High Content Screening Identifies Decaprenyl-Phosphoribose 2′ Epimerase as a Target for Intracellular Antimycobacterial Inhibitors Thierry Christophe,Mary Jackson,Hee Kyoung Jeon,Denis Fenistein,Monica Contreras-Dominguezet al. PLoS Pathogens, 2009, 5 (10), pp.e1000645. ⟨10.1371/journal.ppat.1000645⟩ Article dans une revue hal-02902018v1
Automated high-throughput siRNA transfection in raw 264.7 macrophages: a case study for optimization procedure. Jean-Philippe Carralot,Tae-Kyu Kim,Boris Lenseigne,Annette S Boese,Peter Sommeret al. Journal of Biomolecular Screening, 2009, 14 (2), pp.151-60. ⟨10.1177/1087057108328762⟩ Article dans une revue pasteur-00683854v1
In Vivo Colocalisation of oskar mRNA and Trans-Acting Proteins Revealed by Quantitative Imaging of the Drosophila Oocyte Musa M. Mhlanga,Diana P. Bratu,Auguste Genovesio,Agata Rybarska,Nicolas Chenouardet al. PLoS ONE, 2009, 4 (7), pp.e6241. ⟨10.1371/journal.pone.0006241⟩ Article dans une revue hal-02902016v1
A Fast, Fully Automated Cell Segmentation Algorithm for High-Throughput and High-Content Screening D. Fenistein,B. Lenseigne,T. Christophe,P. Brodin,Auguste Genovesio Cytometry Part A, 2008, 73A (10), pp.958-964. ⟨10.1002/cyto.a.20627⟩ Article dans une revue hal-02902007v1
Automated Nuclear Analysis of Leishmania major Telomeric Clusters Reveals Changes in Their Organization during the Parasite's Life Cycle Fernando de M. Dossin,Alexandre Dufour,Elodie Dusch,Jair Siqueira-Neto,Carolina Moraeset al. PLoS ONE, 2008, 3 (6), pp.e2313. ⟨10.1371/journal.pone.0002313⟩ Article dans une revue hal-04081334v1
High-Content Classification of Nucleocytoplasmic Import or Export Inhibitors Yong-Jun Kwon,Auguste Genovesio,Nam Youl Kim,Hi Chul Kim,Sungyong Junget al. Journal of Biomolecular Screening, 2007, 12 (5), pp.621-627. ⟨10.1177/1087057107301319⟩ Article dans une revue hal-02425950v1
Three-dimensional point spread function model for line-scanning confocal microscope with high-aperture objective E. Dusch,T. Dorval,N. Vincent,M. Wachsmuth,Auguste Genovesio Journal of Microscopy, 2007, 228 (2), pp.132 - 138. ⟨10.1111/j.1365-2818.2007.01844.x⟩ Article dans une revue hal-02901997v1
Quantitative four-dimensional tracking of cytoplasmic and nuclear HIV-1 complexes Nathalie Arhel,Auguste Genovesio,Kim Ka,Sarah Miko,Emmanuelle Perretet al. Nature Methods, 2006, 3 (10), pp.817-824. ⟨10.1038/nmeth928⟩ Article dans une revue pasteur-00163778v1
Cerebral microcirculation shear stress levels determine Neisseria meningitidis attachment sites along the blood–brain barrier Emilie Mairey,Auguste Genovesio,Emmanuel Donnadieu,Christine Bernard,Francis Jaubertet al. Journal of Experimental Medicine, 2006, 203 (8), pp.1939-1950. ⟨10.1084/jem.20060482⟩ Article dans une revue hal-02425940v1
Telomere tethering at the nuclear periphery is essential for efficient DNA double strand break repair in subtelomeric region Pierre Therizols,Cécile Fairhead,Ghislain Cabal,Auguste Genovesio,Jean-Christophe Olivo-Marinet al. Journal of Cell Biology, 2006, 172 (2), pp.189-199. ⟨10.1083/jcb.200505159⟩ Article dans une revue hal-02425531v1
SAGA interacting factors confine sub-diffusion of transcribed genes to the nuclear envelope. Ghislain G Cabal,Auguste Genovesio,Susana Rodriguez-Navarro,Christophe Zimmer,Olivier Gadalet al. Nature, 2006, 441 (7094), pp.770-3. ⟨10.1038/nature04752⟩ Article dans une revue istex pasteur-00207343v1
Multiple particle tracking in 3-D+t microscopy: method and application to the tracking of endocytosed quantum dots Auguste Genovesio,T. Liedl,V. Emiliani,W.J. Parak,M. Coppey-Moisanet al. IEEE Transactions on Image Processing, 2006, 15 (5), pp.1062-1070. ⟨10.1109/TIP.2006.872323⟩ Article dans une revue hal-02425944v1

Proceedings/Recueil des communications (4)

A Cross Modal Knowledge Distillation & Data Augmentation Recipe for Improving Transcriptomics Representations through Morphological Features Ihab Bendidi,Yassir El Mesbahi,Alisandra Denton,Karush Suri,Kian Kenyon-Deanet al. International Conference on Machine Learning, Jul 2025, Vancouver (Canada), France. arXiv, 2025, ⟨10.48550/arXiv.2505.21317⟩ Proceedings/Recueil des communications hal-05462369v1
ChAda-ViT : Channel Adaptive Attention for Joint Representation Learning of Heterogeneous Microscopy Image Nicolas Bourriez,Ihab Bendidi,Ethan Cohen,Gabriel Watkinson,Maxime Sanchezet al. 2024 IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR), Jun 2024, Seattle, United States. IEEE, pp.11556-11565, 2024, ⟨10.1109/CVPR52733.2024.01098⟩ Proceedings/Recueil des communications hal-05462342v1
One Style is All You Need to Generate a Video Sandeep Manandhar,Auguste Genovesio 2024 IEEE/CVF Winter Conference on Applications of Computer Vision (WACV), Jan 2024, Waikoloa, United States. 13 (1), IEEE, pp.5026-5035, 2023, ⟨10.1109/wacv57701.2024.00496⟩ Proceedings/Recueil des communications hal-05462334v1
Weakly Supervised Cross-Modal Learning in High-Content Screening Gabriel Watkinson,Ethan Cohen,Nicolas Bourriez,Ihab Bendidi,Guillaume Bollotet al. 2024 IEEE International Symposium on Biomedical Imaging (ISBI), May 2024, Athens, France. IEEE, pp.1-5, 2023, ⟨10.1109/ISBI56570.2024.10635200⟩ Proceedings/Recueil des communications hal-05462338v1

Pré-publication, Document de travail (4)

Revealing Subtle Phenotypes in Small Microscopy Datasets Using Latent Diffusion Models Anis Bourou,Biel Castaño Segade,Thomas Boye,Valérie Mezger,Auguste Genovesio 2025 Pré-publication, Document de travail hal-05390170v1
Evolution is not uniform along protein sequences Raphaël Bricout,Dominique Weil,David Stroebel,Auguste Genovesio,Hugues Roest Crollius 2022 Pré-publication, Document de travail (preprint/prepublication) hal-03863169v1
Evolutionary analysis of DNA methyltransferases in microeukaryotes: Insights from the model diatom Phaeodactylum tricornutum Antoine Hoguin,Ouardia Ait Mohamed,Chris Bowler,Auguste Genovesio,Fabio Rocha Jimenez Vieiraet al. 2021 Pré-publication, Document de travail hal-03374155v1
H3K27me3 natural variation selectively marks genes predicted to be important for differentiation in unicellular algae Xue Zhao,Achal Rastogi,Anne Flore Deton Cabanillas,Ouardia Ait Mohamed,Catherine Cantrelet al. 2020 Pré-publication, Document de travail hal-02998293v1

Communication dans un congrès (25)

Comparison of Semi-supervised Learning Methods for High Content Screening Quality Control Umar Masud,Ethan Cohen,Ihab Bendidi,Guillaume Bollot,Auguste Genovesio ECCV 2022, 2022, Tel Aviv, Israël, France. pp.395-405, ⟨10.1007/978-3-031-25069-9_26⟩ Communication dans un congrès hal-04081398v1
SAVGAN: Self-Attention Based Generation of Tumour on Chip Videos Sandeep Manandhar,Irina Veith,Maria Carla Parrini,Auguste Genovesio 2022 IEEE 19th International Symposium on Biomedical Imaging (ISBI), Mar 2022, Kolkata, India. pp.1-5, ⟨10.1109/ISBI52829.2022.9761518⟩ Communication dans un congrès hal-04081376v1
Unpaired Image-to-Image Translation with Limited Data to Reveal Subtle Phenotypes Anis Bourou,Kevin Daupin,Veronique Dubreuil,Aurélie de Thonel,Valerie Mezger-Lallemandet al. Thirty-sixth Conference on Neural Information Processing Systems (NeurIPS 202), Nov 2022, La Nouvelle Orléans, LA, United States Communication dans un congrès hal-04081464v1
Non-Convex Cell Epithelial Modeling Unveils Cellular Interactions Elise Laruelle,Auguste Genovesio 2022 IEEE 19th International Symposium on Biomedical Imaging (ISBI), Mar 2022, Kolkata, India. pp.1-5, ⟨10.1109/ISBI52829.2022.9761452⟩ Communication dans un congrès hal-04081371v1
Super-Resolution through StyleGAN Regularized Latent Search Marzieh Gheisari,Auguste Genovesio 36th Conference on Neural Information Processing Systems (NeurIPS 2022). NeurIPS - Self-Supervised Learning - Theory and Practice, Nov 2022, New Orleans, United States Communication dans un congrès hal-04081416v1
A Method For Discontinuous Neurite Reconstruction Based On Diffusion Tensor, Hessian Eigenvector, And Diffused Gradient Vector Fields Heechang Kim,Georges Stamon,Auguste Genovesio 2011 18th IEEE International Conference on Image Processing (ICIP 2011), Sep 2011, Brussels, France. pp.1401-1404, ⟨10.1109/ICIP.2011.6115702⟩ Communication dans un congrès hal-02902039v1
Spatially Adaptive Relaxation For Active Contour Cell Segmentation Arnaud Ogier,T. Dorval,B. Kim,Auguste Genovesio 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Apr 2010, Rotterdam, France. pp.1033-1036, ⟨10.1109/ISBI.2010.5490166⟩ Communication dans un congrès hal-02902025v1
Neuron Branch Detection And Description Using Random Walk Hee Chang Kim,Auguste Genovesio 2009 Annual International Conference of the IEEE Engineering in Medicine and Biology Society, Sep 2009, Minneapolis, France. pp.1020-1023, ⟨10.1109/IEMBS.2009.5334083⟩ Communication dans un congrès hal-02902010v1
3D Spatial Drift Correction Using Kalman Filtering For Fluorescence Based Imaging T. Dorval,Cb. Moraes,Arnaud Ogier,L.H. Freitas,Auguste Genovesio 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI), Jun 2009, Boston, France. pp.1119-1122, ⟨10.1109/ISBI.2009.5193253⟩ Communication dans un congrès hal-02902013v1
Active Vector Graph For Regularized Tesselation Auguste Genovesio 2009 16th IEEE International Conference on Image Processing ICIP 2009, Nov 2009, Cairo, France. pp.2429-2432, ⟨10.1109/ICIP.2009.5414154⟩ Communication dans un congrès hal-02902022v1
INHOMOGENEOUS DECONVOLUTION IN A BIOLOGICAL IMAGES CONTEXT Arnaud Ogier,T. Dorval,Auguste Genovesio 2008 5th IEEE International Symposium on Biomedical Imaging (ISBI 2008), May 2008, Paris, France. pp.744-747, ⟨10.1109/ISBI.2008.4541103⟩ Communication dans un congrès hal-02901998v1
IM.Grid, a Grid Computing Approach for Image Mining of High Throughput-High Content Screening Hongkee Moon,Auguste Genovesio 2008 9th IEEE/ACM International Conference on Grid Computing (GRID), Sep 2008, Tsukuba, France. pp.334-339, ⟨10.1109/GRID.2008.4662818⟩ Communication dans un congrès hal-02902005v1
3D Fluorescent Spots Detection in Line-Scanning Confocal Microscopy E. Dusch,N. Vincent,Auguste Genovesio 2007 IEEE International Conference on Image Processing, Sep 2007, San Antonio, France. pp.VI - 241-VI - 244, ⟨10.1109/ICIP.2007.4379566⟩ Communication dans un congrès hal-02426311v1
Biased Image Correction Based on Empirical Mode Decomposition Arnaud Ogier,T. Dorval,Auguste Genovesio 2007 IEEE International Conference on Image Processing, Sep 2007, San Antonio, France. pp.I - 533-I - 536, ⟨10.1109/ICIP.2007.4379009⟩ Communication dans un congrès hal-02901982v1
Support vector machines for automatic detection of tuberculosis bacteria in confocal microscopy images Boris Lenseigne,Priscille Brodin,Hee Jeon,Christophe Thierry,Auguste Genovesio 2007 4th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Apr 2007, Arlington, France. pp.85-88, ⟨10.1109/ISBI.2007.356794⟩ Communication dans un congrès hal-02425948v1
A New Color Representation for Intensity Independent Pixel Classification in Confocal Microscopy Images Boris Lenseigne,Thierry Dorval,Arnaud Ogier,Auguste Genovesio Advanced Concepts for Intelligent Vision Systems. ACIVS 2007. Lecture Notes in Computer Science, Aug 2007, Delft, Netherlands. pp.597-606, ⟨10.1007/978-3-540-74607-2_54⟩ Communication dans un congrès istex hal-02425953v1
3D Automated Nuclear Morphometric Analysis Using Active Meshes Alexandre Dufour,Joohyun Lee,Nicole Vincent,Régis Grailhe,Auguste Genovesio Pattern Recognition in Bioinformatics. PRIB. Lecture Notes in Computer Science, Oct 2007, Singapore, Singapore. pp.356-367, ⟨10.1007/978-3-540-75286-8_34⟩ Communication dans un congrès hal-02426368v1
3D Mumford-Shah Based Active Mesh Alexandre Dufour,Nicole Vincent,Auguste Genovesio Progress in Pattern Recognition, Image Analysis and Applications. CIARP 2006. Lecture Notes in Computer Science, Nov 2006, Cancun, Mexico. pp.208-217, ⟨10.1007/11892755_21⟩ Communication dans un congrès hal-02425946v1
Automated Confocal Microscope Bias Correction Thierry Dorval,Auguste Genovesio INFORMATION OPTICS: 5th International Workshop on Information Optics (WIO'06), Oct 2006, Toledo (Spain), France. pp.463-470, ⟨10.1063/1.2361251⟩ Communication dans un congrès hal-02425945v1
Adaptive gating in gaussian bayesian multi-target tracking Auguste Genovesio,Z. Belhassine,J.-C. Olivo-Marin 2004 International Conference on Image Processing, 2004. ICIP '04., Apr 2005, Singapore, France. pp.147-150, ⟨10.1109/ICIP.2004.1418711⟩ Communication dans un congrès hal-02425525v1
Interacting multiple model based method to track moving fluorescent biological spots Auguste Genovesio,Bo Zhang,J.-C. Olivo-Marin 2004 2nd IEEE International Symposium on Biomedical Imaging: Macro to Nano, Apr 2004, Arlington, United States. pp.1239-1242, ⟨10.1109/ISBI.2004.1398769⟩ Communication dans un congrès hal-02425514v1
Split and merge data association filter for dense multi-target tracking Auguste Genovesio,Jean-Christophe Olivo-Marin International Conference on Pattern Recognition ICPR, Aug 2004, Cambridge, United Kingdom Communication dans un congrès hal-02425520v1
Adaptive gating in gaussian bayesian multi-target tracking Auguste Genovesio,Z. Belhassine,J.-C. Olivo-Marin 2004 International Conference on Image Processing, 2004. ICIP '04., Oct 2004, Singapore, France. pp.147-150, ⟨10.1109/ICIP.2004.1418711⟩ Communication dans un congrès hal-04081092v1
Tracking of multiple fluorescent biological objects in three dimensional video microscopy Auguste Genovesio,B. Zhang,J.-C. Olivo-Marin International Conference on Image Processing, Sep 2003, Barcelona, France. pp.I-1105-8, ⟨10.1109/ICIP.2003.1247160⟩ Communication dans un congrès hal-02425510v1
Tracking fluroescent spots in biological video microscopy Auguste Genovesio,Jean-Christophe Olivo-Marin Biomedical Optics 2003, Jul 2003, San Jose, United States. pp.98, ⟨10.1117/12.478040⟩ Communication dans un congrès hal-02425506v1

Chapitre d'ouvrage (2)

Automated Identification and Analysis of Visual Micro-experiments on Cellular Microarray Auguste Genovesio Advances in Bio-Imaging: From Physics to Signal Understanding, pp.27-33, 2012, ⟨10.1007/978-3-642-25547-2_3⟩ Chapitre d'ouvrage istex hal-02902046v1
Bias Image Correction Via Stationarity Maximization T. Dorval,Arnaud Ogier,Auguste Genovesio Medical Image Computing and Computer-Assisted Intervention – MICCAI 2007, 4792, Springer Berlin Heidelberg; Springer Berlin Heidelberg, pp.693-700, 2007, Lecture Notes in Computer Science, ⟨10.1007/978-3-540-75759-7_84⟩ Chapitre d'ouvrage hal-02901994v1