Aurélie Pirayre

Publications

Article dans une revue (4)

Glucose-lactose mixture feeds in industry-like conditions: a gene regulatory network analysis on the hyperproducing Trichoderma reesei strain Rut-C30 Aurélie Pirayre,Laurent Duval,Corinne Blugeon,Cyril Firmo,Sandrine Perrinet al. BMC Genomics, 2020, 21, pp.885. ⟨10.1186/s12864-020-07281-8⟩ Article dans une revue hal-02805426v1
BRANE Clust: Cluster-Assisted Gene Regulatory Network Inference Refinement Aurélie Pirayre,Camille Couprie,Laurent Duval,Jean-Christophe Pesquet IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2018, 15 (3), pp.850-860. ⟨10.1101/114769⟩ Article dans une revue hal-01330638v1
BRANE Cut: Biologically-Related A priori Network Enhancement with Graph cuts for Gene Regulatory Network Inference Aurélie Pirayre,Camille Couprie,Frédérique Bidard,Laurent Duval,Jean-Christophe Pesquet BMC Bioinformatics, 2015, ⟨10.1186/s12859-015-0754-2⟩ Article dans une revue hal-01330611v1
Kinetic transcriptome analysis reveals an essentially intact induction system in a cellulase hyper-producer Trichoderma reesei strain Dante Poggi-Parodi,Frédérique Bidard,Aurélie Pirayre,Thomas Portnoy,Corinne Blugeonet al. Biotechnology for Biofuels, 2014, 7, pp.173. ⟨10.1186/s13068-014-0173-z⟩ Article dans une revue hal-01112360v1

Communication dans un congrès (4)

Network-Wide Traffic Volume Estimation from Speed Profiles using a Spatio-Temporal Graph Neural Network with Directed Spatial Attention Léo Hein,Giovanni de Nunzio,Giovanni Chierchia,Aurélie Pirayre,Laurent Najman 28th International Conference on Intelligent Transportation Systems, Institute of Electrical and Electronics Engineers Intelligent Transportation Systems Society, Nov 2025, Gold Coast, Australia. pp.826 Communication dans un congrès hal-05361809v1
Multiomics Data Integration for Gene Regulatory Network Inference with Exponential Family Embeddings Surabhi Jagtap,Abdulkadir Çelikkanat,Aurélie Pirayre,Frederique Bidard,Laurent Duvalet al. EUSIPCO - 29th European Signal Processing Conference, Aug 2021, Dublin / Online, Ireland Communication dans un congrès hal-03336884v1
HOGMep: Variational Bayes and higher-order graphical models applied to joint image recovery and segmentation Aurélie Pirayre,Yuling Y. Zheng,Laurent Duval,Jean-Christophe Pesquet 2017 IEEE International Conference on Image Processing (ICIP), Sep 2017, Beijing, China. ⟨10.1109/ICIP.2017.8296988⟩ Communication dans un congrès hal-01862840v1
Suppression de ligne de base et débruitage de chromatogrammes par pénalisation asymétrique de positivité et dérivées parcimonieuses Laurent Duval,Aurélie Pirayre,Xiaoran Ning,Ivan Selesnick GRETSI : Colloque francophone de traitement du signal et des images, Sep 2015, Lyon, France Communication dans un congrès hal-02077964v1

Poster de conférence (2)

Robustifying a PLS property prediction workflow on NMR spectra with optimized processing Laurent Duval,Lacoue-Negre Marion,Pirayre Aurélie Faraday discussions: Challenges in analysis of complex natural mixtures Faraday Discussion, May 2019, Edinburgh, France Poster de conférence hal-02182628v1
The cellulase induction system in Trichoderma reesei strains remains well conserved despite several generations of random mutagenesis and screening Dante Poggi-Parodi,Aurelie Pirayre,Thomas Portnoy,Hugues Mathis,Thiziri Aouamet al. 16th European Congress on Biotechnology, Jul 2014, Edinburgh, United Kingdom. 31 (S), pp.S216, 2014, ⟨10.1016/j.nbt.2014.05.1006⟩ Poster de conférence hal-01536636v1

Pré-publication, Document de travail (2)

Clustering Dynamics for Improved Speed Prediction Deriving from Topographical GPS Registrations Sarah Almeida Carneiro,Giovanni Chierchia,Aurelie Pirayre,Laurent Najman 2024 Pré-publication, Document de travail hal-04444354v1
Joint restoration/segmentation of multicomponent images with variationalBayes and higher-order graphical models (HOGMep) Yuling Zheng,Aurélie Pirayre,Laurent Duval,Jean-Christophe Pesquet 2017 Pré-publication, Document de travail hal-01528856v1

Rapport (1)

A review on graph optimization and algorithmic frameworks Alessandro Benfenati,Emilie Chouzenoux,Laurent Duval,Jean-Christophe Pesquet,Aurélie Pirayre [Research Report] LIGM - Laboratoire d'Informatique Gaspard-Monge. 2018 Rapport (rapport de recherche) hal-01901499v1

Thèse (2)

Reconstruction and Clustering with Graph optimization and Priors on Gene networks and Images Aurélie Pirayre Methods and statistics. Université Paris Est - Marne-la-Vallée, 2017. English. ⟨NNT : ⟩ Thèse tel-01879732v1
Reconstruction and clustering with graph optimization and priors on gene networks and images Aurélie Pirayre Signal and Image Processing. Université Paris-Est, 2017. English. ⟨NNT : 2017PESC1170⟩ Thèse tel-02067269v1