Aurélie Siberchicot Ingénieure logiciel

Identifiants chercheurs

IdHAL :

aurelie-siberchicot

ORCID :

0000-0002-7638-8318

IdRef :

232861307

Publications

Article dans une revue (18)

Comment anticiper le risque de dispersion des Culicoides par le vent ? Windi App Vaissié Pauline,Martinetti Davide,Siberchicot Aurélie,Delmotte Stéphane,Porphyre Thibaudet al. Epidémiologie et Santé Animale, 2025, 85 (11) Article dans une revue hal-05539546v1
Larval density in the invasive Drosophila suzukii : Immediate and delayed effects on life‐history traits Alicia Reyes‐ramírez,Zaïnab Belgaidi,Patricia Gibert,Thomas Pommier,Aurélie Siberchicotet al. Ecology and Evolution, 2023, 13 (8), pp.e10433. ⟨10.1002/ece3.10433⟩ Article dans une revue hal-04206242v1
DRomics, a workflow to exploit dose-response omics data in ecotoxicology Marie Laure Delignette-Muller,Aurélie Siberchicot,Floriane Larras,Elise Billoir Peer Community Journal, 2023, 3, pp.e90. ⟨10.24072/pcjournal.325⟩ Article dans une revue hal-04231043v1
PhylteR: Efficient Identification of Outlier Sequences in Phylogenomic Datasets Aurore Comte,Théo Tricou,Eric Tannier,Julien Joseph,Aurélie Siberchicotet al. Molecular Biology and Evolution, 2023, 40 (11), pp.msad234. ⟨10.1093/molbev/msad234⟩ Article dans une revue hal-03995366v3
rbioacc: An R-package to analyze toxicokinetic data Aude Ratier,Virgile Baudrot,Miléna Kaag,Aurélie Siberchicot,Christelle Lopeset al. Ecotoxicology and Environmental Safety, 2022, 242, pp.113875. ⟨10.1016/j.ecoenv.2022.113875⟩ Article dans une revue ineris-03846876v1
Taking full advantage of modelling to better assess environmental risk due to xenobiotics Sandrine Charles,Aude Ratier,Virgile Baudrot,Gauthier Multari,Aurélie Siberchicotet al. Environmental Science and Pollution Research, In press, ⟨10.1007/s11356-021-15042-7⟩ Article dans une revue hal-03362566v1
Lifespan decreases with proportion of sons in males but not females of zoo‐housed tigers and lemurs Morgane Tidière,Guillaume Douay,Peter Müller,Aurélie Siberchicot,Alexander Sliwaet al. Journal of Evolutionary Biology, 2021, ⟨10.1111/jeb.13793⟩ Article dans une revue hal-03228336v1
Sex‐specific actuarial and reproductive senescence in zoo‐housed tiger ( Panthera tigris ): The importance of sub‐species for conservation Morgane Tidière,Peter Müller,Alexander Sliwa,Aurélie Siberchicot,Guillaume Douay Zoo Biology, 2021, ⟨10.1002/zoo.21610⟩ Article dans une revue hal-03225426v1
DRomics: A Turnkey Tool to Support the Use of the Dose–Response Framework for Omics Data in Ecological Risk Assessment Floriane Larras,Elise Billoir,Vincent Baillard,Aurélie Siberchicot,Stefan Scholzet al. Environmental Science and Technology, 2018, 52 (24), pp.14461-14468. ⟨10.1021/acs.est.8b04752⟩ Article dans une revue hal-02309919v1
Maternal reproductive senescence shapes the fitness consequences of the parental age difference in ruffed lemurs Morgane Tidière,Xavier Thevenot,Adamantia Deligiannopoulou,Guillaume Douay,Mylisa Whippleet al. Proceedings of the Royal Society B: Biological Sciences, 2018, 285 (1886), pp.20181479. ⟨10.1098/rspb.2018.1479⟩ Article dans une revue hal-02309944v1
Pollen limitation as a main driver of fruiting dynamics in oak populations Éliane Schermer,Marie‐claude Bel‐venner,David Fouchet,Aurélie Siberchicot,Vincent Boulangeret al. Ecology Letters, 2018, 22 (1), pp.98-107. ⟨10.1111/ele.13171⟩ Article dans une revue hal-04766473v1
adegraphics: An S4 Lattice-Based Package for the Representation of Multivariate Data Aurélie Siberchicot,A. Julien-Laferrière,Ab. Dufour,J. Thioulouse,S. Dray The R Journal, 2017, 9 (2), pp.198-212. ⟨10.32614/RJ-2017-042⟩ Article dans une revue hal-01887857v1
MareyMap online: A user-friendly web application and database service for estimating recombination rates using physical and genetic maps Aurélie Siberchicot,Adrien Bessy,Laurent Gueguen,Gabriel A. B. Marais Genome Biology and Evolution, 2017, 9 (10), pp.2506-2509. ⟨10.1093/gbe/evx178⟩ Article dans une revue hal-02624713v1
Fruiting Strategies of Perennial Plants: A Resource Budget Model to Couple Mast Seeding to Pollination Efficiency and Resource Allocation Strategies Samuel Venner,A. Siberchicot,P.F. Pélisson,E. Schermer,Marie-Claude Bel-Venneret al. The American Naturalist, 2016, 188 (1), pp.66-75. ⟨10.1086/686684⟩ Article dans une revue hal-02049895v1
Unknown age in health disorders: A method to account for its cumulative effect and an application to feline viruses interactions. Eléonore Hellard,Dominique Pontier,Aurélie Siberchicot,Frank Sauvage,David Fouchet Epidemics, 2015, 11, pp.48-55. ⟨10.1016/j.epidem.2015.02.004⟩ Article dans une revue hal-01157786v1
Determining the instar of a weevil larva (Coleoptera: Curculionidae) using a parsimonious method A. Merville,A. Vallier,Samuel Venner,A. Siberchicot,D. Fouchetet al. European Journal of Entomology, 2014, 111 (4), pp.567-573. ⟨10.14411/eje.2014.056⟩ Article dans une revue hal-01449145v1
Conference Report: Deuxièmes Rencontres R Aurélie Siberchicot,S. Dray The R Journal, 2013, 5/2, pp.164--165 Article dans une revue hal-01887870v1
Novel measures of linkage disequilibrium that correct the bias due to population structure and relatedness Brigitte Mangin,Aurélie Siberchicot,S. Nicolas,Agnes Doligez,Patrice Thiset al. Heredity, 2012, 108 (3), pp.285-291. ⟨10.1038/hdy.2011.73⟩ Article dans une revue hal-01267769v1

Communication dans un congrès (5)

Utilisation de DRomics pour modéliser les données omiques de type dose-réponse dans le cadre de l’appréciation du risque environnemental Marie-Laure Delignette-Muller,F. Larras,Elise Billoir,Aurélie Siberchicot,Mechthild Schmitt-Jansen SEFA (Société d’Ecotoxicologie Fondamentale et Appliquée), Jun 2019, Lyon, France Communication dans un congrès hal-04963332v1
New goodness-of-fit plots for censored data in the package fitdistrplus Marie-Laure Delignette-Muller,Christophe Dutang,Aurélie Siberchicot 7ème rencontres R, Jul 2018, Rennes, France Communication dans un congrès hal-04920835v1
Modelling of omics dose-response data for ecological risk assessment Marie-Laure Delignette-Muller,F. Larras,E. Billoir,Aurélie Siberchicot,V. Baillardet al. Journées du GDR Ecologie Statistique (EcoStat), Oct 2018, Grenoble, France Communication dans un congrès hal-04920770v1
Genetic structure and linkage disequilibrium in 4 Vitis species Patrice This,Stephane Nicolas,Jean-Pierre Peros,Thierry Lacombe,Loic Le Cunffet al. Plant and Animal Genomes Conference, Jan 2011, San Diego, United States Communication dans un congrès hal-01506173v1
Genetic structure and linkage disequilibrium in four Vitis species Stephane Nicolas,Jean-Pierre Peros,Patrice P. This,Thierry Lacombe,L. Le Cunffet al. 10. International Conference on Grapevine Breeding and Genetics, Aug 2010, Geneva (N.Y.), United States Communication dans un congrès hal-02756085v1

Poster de conférence (4)

Windi App, an R Shiny Tool to Rapidly Assess the Risk of Culicoides Wind Dispersal Pauline Vaissié,Davide Martinetti,Aurélie Siberchicot,Stephane Delmotte,Thibaud Porphyreet al. 13. International Congress for Veterinary Virology Including an EPIZONE Session, Sep 2025, Portorož, Slovenia. Poster de conférence hal-05216435v1
DRomics: an R tool for modelling omics dose-response data Marie-Laure Delignette-Muller,Floriane Larras,Elise Billoir,Aurélie Siberchicot,Mechthild Schmitt-Jansen Congrès useR!, 2019, Toulouse, France. Communication par affiche (poster), 2019 Poster de conférence hal-04940104v1
Genetic structure and linkage disequilibrium in 4 species of the Vitis genus Patrice P. This,Stephane Nicolas,Alexis Dereeper,Agnès Doligez,Jean-Pierre Peroset al. Génoplante, Mar 2010, Pont Royal, France. 2010 Poster de conférence hal-02818909v1
Genetic structure and linkage disequilibrium in 4 Vitis species Stephane Nicolas,Jean-Pierre Peros,Patrice P. This,Thierry Lacombe,Valerie V. Laucouet al. Grapevine breeding and genetics, Aug 2010, Geneva, New York, United States. , 2010 Poster de conférence hal-02822150v1

Ouvrages (1)

Multivariate Analysis of Ecological Data with ade4 Jean Thioulouse,Stéphane Dray,Anne-Béatrice Dufour,Aurélie Siberchicot,Thibaut Jombartet al. Springer New York, 2018, ⟨10.1007/978-1-4939-8850-1⟩ Ouvrages hal-02309884v1

Logiciel (9)

DRomics: Dose Response for Omics Marie-Laure Delignette-Muller,Elise Billoir,Aurélie Siberchicot 2024, ⟨swh:1:dir:c9238a344ce0690515ae56048e3f62f6da155cb7;origin=https://github.com/lbbe-software/DRomics;visit=swh:1:snp:5525f2891b32a238df0d8935e777ee1a31c5bac5;anchor=swh:1:rev:59980e0e97942a240023b2c841720860ecbbd295⟩ Logiciel hal-04976156v1
adespatial: Multivariate Multiscale Spatial Analysis Stéphane Dray,Aurélie Siberchicot 2024, ⟨swh:1:dir:d47b25223aa96318cf263c999dd68da682dd8151;origin=https://github.com/adeverse/adespatial;visit=swh:1:snp:d06d09bee3bd54bae9f68cb6a23080fcab8cf2d4;anchor=swh:1:rev:9718305b94051b414dbf34527362366b3b2778dc⟩ Logiciel hal-04976074v1
fitdistrplus: Help to Fit of a Parametric Distribution to Non-Censored or Censored Data Marie-Laure Delignette-Muller,Christophe Dutang,Aurelie Siberchicot 2024, ⟨swh:1:dir:0dd1ff04558397de7014131b4e575196da3f4a53;origin=https://hal.archives-ouvertes.fr/hal-04722769;visit=swh:1:snp:ce008b885058bee712ed7d6da61ec12e67c58036;anchor=swh:1:rel:c45c4f67197365c5c3d20b9d67c3d239c8fbe96e;path=/⟩ Logiciel hal-04722769v1
nlsMicrobio: Nonlinear Regression in Predictive Microbiology Florent Baty,Marie-Laure Delignette-Muller,Aurélie Siberchicot 2024, ⟨swh:1:dir:ab0e5ec11c409dd45dcca9cdcddfb045f48a37bf;origin=https://github.com/lbbe-software/nlsMicrobio;visit=swh:1:snp:2fe5c2e77d78559c272aa934eee124cffbe5ec8a;anchor=swh:1:rev:0e251f6522cccd9a5ca4baff80d7e13d207d91c0⟩ Logiciel hal-04975390v1
ade4: Analysis of Ecological Data: Exploratory and Euclidean Methods in Environmental Sciences Stéphane Dray,Anne-Béatrice Dufour,Jean Thioulouse,Aurélie Siberchicot,Thibaut Jombartet al. 2024, ⟨swh:1:dir:95f239f062befdbdcdafff9f7481b8c21fdeff6c⟩ Logiciel hal-04690682v1
nlstools: Tools for Nonlinear Regression Analysis Florent Baty,Marie-Laure Delignette-Muller,Aurélie Siberchicot,Sandrine Charles,Jean-Pierre Flandrois 2024, ⟨swh:1:dir:d8d109a9fd1c8c6f4e8607684ff3b1de1a2ac290;origin=https://github.com/lbbe-software/nlstools;visit=swh:1:snp:039ab9af980f413a239f8da43698b409cedba341;anchor=swh:1:rev:a676ed157555a813cd4af0f6ee72875dd75d01e9⟩ Logiciel hal-04972193v1
phylter: Detect and Remove Outliers in Phylogenomics Datasets Damien de Vienne,Stéphane Dray,Théo Tricou,Aurélie Siberchicot 2023, ⟨swh:1:dir:dfe8a3a2e14a5d702074a8c35f288bf13346c6a9;origin=https://github.com/damiendevienne/phylter;visit=swh:1:snp:d1c7bbb9b94f2c10238606bcc54cea184b8749af;anchor=swh:1:rev:3c06fa9ddf83bf5073fe05b28f7ff9f9fa39ebfc⟩ Logiciel hal-04976675v1
LifemapR: Data Visualisation on 'Lifemap' Tree Cassandra Bompard,Damien de Vienne,Julien Barnier,Aurélie Siberchicot 2023, ⟨swh:1:dir:5888a5405100a61c81a03373e5c8bafdbe328cd9;origin=https://github.com/Lifemap-ToL/LifemapR;visit=swh:1:snp:42223780328df3caf1afa308418024a9150090f5;anchor=swh:1:rev:439b8c85fb3d3ba79598cc2adef0b2ede071fc4f⟩ Logiciel hal-04976459v1
adephylo: Exploratory Analyses for the Phylogenetic Comparative Method Stéphane Dray,Thibaut Jombart,Aurélie Siberchicot 2023, ⟨swh:1:dir:8652a24db09b8a6b04e9db682f91a46a038cdbb6;origin=https://github.com/adeverse/adephylo;visit=swh:1:snp:30e131d15586bf8af39eded4f0d5290fbdefada8;anchor=swh:1:rev:2817c696a700dbf4e67c0e5be974191135f5367d⟩ Logiciel hal-04979960v1