Aurélien Carlier

Identifiants chercheurs

IdHAL :

aurelien-carlier

ORCID :

0000-0001-7565-1586

IdRef :

240121198

ResearcherID :

http://www.researcherid.com/rid/M-9671-2016

Publications

Article dans une revue (44)

Corrigendum to “Govania unica gen. nov., sp. nov., a rare biosphere bacterium that represents a novel family in the class Alphaproteobacteria” [Syst. Appl. Microbiol. 46(3) (2023) 126405] Peter Vandamme,Charlotte Peeters,Amanda Hettiarachchi,Margo Cnockaert,Aurélien Carlier Systematic and Applied Microbiology, 2025, 48 (5), pp.126642. ⟨10.1016/j.syapm.2025.126642⟩ Article dans une revue hal-05284223v1
Artificial symbiont replacement in a vertically transmitted plant symbiosis reveals a role for microbe–microbe interactions in enforcing specificity Léa Ninzatti,Thibault G Sana,Tessa Acar,Sandra Moreau,Marie-Françoise Jardinaudet al. The International Society of Microbiologial Ecology Journal, 2025, 19 (1), pp.wraf177. ⟨10.1093/ismejo/wraf177⟩ Article dans une revue hal-05514678v1
Hereditary Leaf Symbiosis in Tropical Plants: Evolution and Function of Vertically Transmitted Bacterial Symbionts Léa Ninzatti,Marie-Françoise Jardinaud,Aurélien Carlier Phytobiomes Journal, 2025, 9 (3), pp.343 - 353. ⟨10.1094/pbiomes-11-24-0111-rvw⟩ Article dans une revue hal-05514735v1
Structures and roles of BcsD and partner scaffold proteins in proteobacterial cellulose secretion Thibault Sana,Areti Notopoulou,Lucie Puygrenier,Marion Decossas,Sandra Moreauet al. Current Biology, 2024, 34 (1), 6 p. ⟨10.1016/j.cub.2023.11.057⟩ Article dans une revue hal-04474396v1
Pseudomonas fortuita sp. nov., isolated from the endosphere of a wild yam Aurelien Carlier,Marine Beaumel,Sandra Moreau,Tessa Acar,Thibault Géry Sanaet al. International Journal of Systematic and Evolutionary Microbiology, 2024, 74 (6), ⟨10.1099/ijsem.0.006395⟩ Article dans une revue hal-04659457v1
The association between Dioscorea sansibarensis and Orrella dioscoreae as a model for hereditary leaf symbiosis Tessa Acar,Sandra Moreau,Marie-Françoise Jardinaud,Gabriella Houdinet,Felicia Maviane-Maciaet al. PLoS ONE, 2024, 19 (4), pp.e0302377. ⟨10.1371/journal.pone.0302377⟩ Article dans une revue hal-04670561v1
Cyclitol metabolism is a central feature of Burkholderia leaf symbionts Bram Danneels,Monique Blignaut,Guillaume Marti,Simon Sieber,Peter Vandammeet al. Environmental Microbiology, 2023, 25 (2), pp.454-472. ⟨10.1111/1462-2920.16292⟩ Article dans une revue hal-04043115v1
Ecotin: A versatile protease inhibitor of bacteria and eukaryotes Frédéric de Meyer,Aurélien Carlier Frontiers in Microbiology, 2023, 14, 8 p. ⟨10.3389/fmicb.2023.1114690⟩ Article dans une revue hal-04012775v1
Govania unica gen. nov., sp. nov., a rare biosphere bacterium that represents a novel family in the class Alphaproteobacteria Peter Vandamme,Charlotte Peeters,Amanda Hettiarachchi,Margo Cnockaert,Aurélien Carlier Systematic and Applied Microbiology, 2023, 46 (3), pp.126405. ⟨10.1016/j.syapm.2023.126405⟩ Article dans une revue hal-04095845v1
Motility-Independent Vertical Transmission of Bacteria in Leaf Symbiosis Tessa Acar,Sandra Moreau,Olivier Coen,Frédéric de Meyer,Olivier Lerouxet al. mBio, 2022, 15 p. ⟨10.1128/mbio.01033-22⟩ Article dans une revue hal-03778794v1
Rhizobium leguminosarum symbiovar viciae strains are natural wheat endophytes that can stimulate root development Claudia Bartoli,Stéphane Boivin,Marta Marchetti,Carine Gris,Virginie Gasciolliet al. Environmental Microbiology, 2022, 24 (11), pp.5509-5523. ⟨10.1111/1462-2920.16148⟩ Article dans une revue hal-04204399v2
Paenibacillus foliorum sp. nov., Paenibacillus phytohabitans sp. nov., Paenibacillus plantarum sp. nov., Paenibacillus planticolens sp. nov., Paenibacillus phytorum sp. nov. and Paenibacillus germinis sp. nov., isolated from the Arabidopsis thaliana phyllosphere Shan Shan Qi,Margo Cnockaert,Aurélien Carlier,Peter Vandamme International Journal of Systematic and Evolutionary Microbiology, 2021, 71 (4), 15 p. ⟨10.1099/ijsem.0.004781⟩ Article dans une revue hal-03592289v1
Erratum: Orrella amnicola sp. nov., isolated from a freshwater river, reclassification of Algicoccus marinus as Orrella marina comb. nov., and emended description of the genus Orrella Shih-Yi Sheu,Li-Chu Chen,Che-Chia Yang,Aurélien Carlier,Wen-Ming Chen International Journal of Systematic and Evolutionary Microbiology, 2021, 71, pp.004749. ⟨10.1099/ijsem.0.004749⟩ Article dans une revue hal-05153687v1
Pedobacter gandavensis sp. nov., Pedobacter foliorum sp. nov. and Pedobacter planticolens sp. nov., isolated from leaves of Arabidopsis thaliana Shan Shan Qi,Shan Shan Qi,Margo Cnockaert,Aurélien Carlier,Peter Vandamme International Journal of Systematic and Evolutionary Microbiology, 2021, 71 (3), 8p. ⟨10.1099/ijsem.0.004667⟩ Article dans une revue hal-03255451v1
Induction of antibiotic specialized metabolism by co‐culturing in a collection of phyllosphere bacteria Shan Shan Qi,Alexander Bogdanov,Margo Cnockaert,Tessa Acar,Sarah Ranty‐robyet al. Environmental Microbiology, 2021, 23 (4), pp.2132-2151. ⟨10.1111/1462‐2920.15382⟩ Article dans une revue hal-03097074v1
Patterns of transmission and horizontal gene transfer in the Dioscorea sansibarensis leaf symbiosis revealed by whole-genome sequencing Bram Danneels,Juan Viruel,Krista Mcgrath,Steven Janssens,Nathan Waleset al. Current Biology, 2021, 31 (12), pp.2666-2673.e4. ⟨10.1016/j.cub.2021.03.049⟩ Article dans une revue hal-03272495v1
Orrella amnicola sp. nov., isolated from a freshwater river, reclassification of Algicoccus marinus as Orrella marina comb. nov., and emended description of the genus Orrella Shih-Yi Sheu,Li-Chu Chen,Che-Chia Yang,Aurélien Carlier,Wen-Ming Chen International Journal of Systematic and Evolutionary Microbiology, 2020, 70 (12), pp.6381-6389. ⟨10.1099/ijsem.0.004538⟩ Article dans une revue hal-03151291v1
PaSiT: a novel approach based on short-oligonucleotide frequencies for efficient bacterial identification and typing Gleb Goussarov,Ilse Cleenwerck,Mohamed Mysara,Natalie Leys,Pieter Monsieurset al. Bioinformatics, 2020, 36 (8), pp.2337-2344. ⟨10.1093/bioinformatics/btz964⟩ Article dans une revue hal-02961993v1
Synthesis and Biological Evaluation of the Novel Growth Inhibitor Streptol Glucoside, Isolated from an Obligate Plant Symbiont Chien-Chi Hsiao,Simon Sieber,Antri Georgiou,Aurélien Bailly,Despina Emmanouilidouet al. Chemistry - A European Journal, 2019, 25 (7), pp.1722-1726. ⟨10.1002/chem.201805693⟩ Article dans une revue hal-02962208v1
Adaptations and evolution of a heritable leaf nodule symbiosis between Dioscorea sansibarensis and Orrella dioscoreae Frédéric de Meyer,Bram Danneels,Tessa Acar,Rado Rasolomampianina,Mamy Tiana Rajaonahet al. The International Society of Microbiologial Ecology Journal, 2019, 13 (7), pp.1831-1844. ⟨10.1038/s41396-019-0398-8⟩ Article dans une revue hal-02961999v1
Introducing SPeDE: High-Throughput Dereplication and Accurate Determination of Microbial Diversity from Matrix-Assisted Laser Desorption–Ionization Time of Flight Mass Spectrometry Data Charles Dumolin,Maarten Aerts,Bart Verheyde,Simon Schellaert,Tim Vandammeet al. mSystems, 2019, 4 (5), pp.e00437-19. ⟨10.1128/mSystems.00437-19⟩ Article dans une revue hal-02961994v1
Heterologous expression, biosynthetic studies, and ecological function of the selective Gq-signaling inhibitor FR900359 Max Crüsemann,Raphael Reher,Isabella Schamari,Alexander O. Brachmann,Tsubasa Ohbayashiet al. Angewandte Chemie International Edition, 2018, 57 (3), pp.836-840. ⟨10.1002/anie.201707996⟩ Article dans une revue hal-02176996v1
Patterns of Nucleotide Deletion and Insertion Inferred from Bacterial Pseudogenes Bram Danneels,Marta Pinto-Carbó,Aurélien Carlier Genome Biology and Evolution, 2018, 10 (7), pp.1792-1802. ⟨10.1093/gbe/evy140⟩ Article dans une revue hal-02962215v1
Heterologe Expression, Biosynthese und ökologische Funktion des selektiven Gq‐Signaltransduktionsinhibitors FR900359 Max Crüsemann,Raphael Reher,Isabella Schamari,Alexander Brachmann,Tsubasa Ohbayashiet al. Angewandte Chemie, 2018, 130 (3), pp.844-849. ⟨10.1002/ange.201707996⟩ Article dans une revue hal-02962250v1
Leaf nodule symbiosis: function and transmission of obligate bacterial endophytes Marta Pinto-Carbó,Karl Gademann,Leo Eberl,Aurélien Carlier Current Opinion in Plant Biology, 2018, 44, pp.23-31. ⟨10.1016/j.pbi.2018.01.001⟩ Article dans une revue (article de synthèse) istex hal-02962213v1
Abditibacterium utsteinense sp. nov., the first cultivated member of candidate phylum FBP, isolated from ice-free Antarctic soil samples Guillaume Tahon,Bjorn Tytgat,Liesbeth Lebbe,Aurélien Carlier,Anne Willems Systematic and Applied Microbiology, 2018, 41 (4), pp.279-290. ⟨10.1016/j.syapm.2018.01.009⟩ Article dans une revue hal-02962216v1
Comparative genomics of Burkholderia multivorans, a ubiquitous pathogen with a highly conserved genomic structure Charlotte Peeters,Vaughn Cooper,Philip Hatcher,Bart Verheyde,Aurélien Carlieret al. PLoS ONE, 2017, 12 (4), pp.e0176191. ⟨10.1371/journal.pone.0176191⟩ Article dans une revue hal-02962266v1
Draft genome and description of Orrella dioscoreae gen. nov. sp. nov., a new species of Alcaligenaceae isolated from leaf acumens of Dioscorea sansibarensis Aurélien Carlier,Margo Cnockaert,Linda Fehr,Peter Vandamme,Leo Eberl Systematic and Applied Microbiology, 2017, 40 (1), pp.11-21. ⟨10.1016/j.syapm.2016.10.002⟩ Article dans une revue istex hal-02962291v1
The Essential Genome of Burkholderia cenocepacia H111 Steven Higgins,Maria Sanchez-Contreras,Stefano Gualdi,Marta Pinto-Carbó,Aurélien Carlieret al. Journal of Bacteriology, 2017, 199 (22), ⟨10.1128/JB.00260-17⟩ Article dans une revue hal-02962261v1
Comparative Genomics of Burkholderia singularis sp. nov., a Low G+C Content, Free-Living Bacterium That Defies Taxonomic Dissection of the Genus Burkholderia Peter Vandamme,Charlotte Peeters,Birgit de Smet,Erin Price,Derek Sarovichet al. Frontiers in Microbiology, 2017, 8, ⟨10.3389/fmicb.2017.01679⟩ Article dans une revue hal-02962256v1
Characterization of the emerging zoonotic pathogen Arcobacter thereius by whole genome sequencing and comparative genomics Francesca Rovetto,Aurélien Carlier,Anne-Marie van den Abeele,Koen Illeghems,Filip van Nieuwerburghet al. PLoS ONE, 2017, 12 (7), pp.e0180493. ⟨10.1371/journal.pone.0180493⟩ Article dans une revue hal-02962265v1
The equivalence of two classical list scheduling algorithms for dependent typed tasks with release dates, due dates and precedence delays Aurélien Carlier,Claire C. Hanen,Alix Munier-Kordon Journal of Scheduling, 2017, pp.1-9. ⟨10.1007/s10951-016-0507-8⟩ Article dans une revue hal-01472060v1
The role of siderophores in metal homeostasis of members of the genus Burkholderia Anugraha Mathew,Christian Jenul,Aurélien Carlier,Leo Eberl Environmental Microbiology Reports, 2016, 8 (1), pp.103-109. ⟨10.1111/1758-2229.12357⟩ Article dans une revue istex hal-02962305v1
Molecular mechanisms underlying the close association between soil Burkholderia and fungi Nejc Stopnisek,Daniela Zühlke,Aurélien Carlier,Albert Barberán,Noah Fiereret al. The International Society of Microbiologial Ecology Journal, 2016, 10 (1), pp.253-264. ⟨10.1038/ismej.2015.73⟩ Article dans une revue hal-02962318v1
Evidence of horizontal gene transfer between obligate leaf nodule symbionts Marta Pinto-Carbó,Simon Sieber,Steven Dessein,Thomas Wicker,Brecht Verstraeteet al. The International Society of Microbiologial Ecology Journal, 2016, 10 (9), pp.2092-2105. ⟨10.1038/ismej.2016.27⟩ Article dans une revue hal-02962299v1
The genome analysis of C andidatus Burkholderia crenata reveals that secondary metabolism may be a key function of the A rdisia crenata leaf nodule symbiosis Aurélien Carlier,Linda Fehr,Marta Pinto-Carbó,Till Schäberle,Raphael Reheret al. Environmental Microbiology, 2016, 18 (8), pp.2507-2522. ⟨10.1111/1462-2920.13184⟩ Article dans une revue istex hal-02962301v1
Mathematical Model for the Study of Relocation Strategies in One-way Carsharing Systems Aurélien Carlier,Alix Munier-Kordon,Witold Klaudel Transportation Research Procedia, 2015, 10, pp.374-383. ⟨10.1016/j.trpro.2015.09.087⟩ Article dans une revue hal-01294551v1
Isolation and Total Synthesis of Kirkamide, an Aminocyclitol from an Obligate Leaf Nodule Symbiont Simon Sieber,Aurélien Carlier,Markus Neuburger,Giselher Grabenweger,Leo Eberlet al. Angewandte Chemie International Edition, 2015, 54 (27), pp.7968-7970. ⟨10.1002/anie.201502696⟩ Article dans une revue hal-02962312v1
The Third Replicon of Members of the Burkholderia cepacia Complex, Plasmid pC3, Plays a Role in Stress Tolerance Kirsty Agnoli,Carmen Frauenknecht,Roman Freitag,Stephan Schwager,Christian Jenulet al. Applied and Environmental Microbiology, 2014, 80 (4), pp.1340-1348. ⟨10.1128/AEM.03330-13⟩ Article dans une revue hal-02381128v1
Genome Sequence of Burkholderia cenocepacia H111, a Cystic Fibrosis Airway Isolate Aurélien Carlier,Kirsty Agnoli,Gabriella Pessi,Angela Suppiger,Christian Jenulet al. Genome Announcements, 2014, 2 (2), pp.00298-14. ⟨10.1128/genomeA.00298-14⟩ Article dans une revue hal-02962320v1
N-hexanoyl-l-homoserine lactone,a mediator of bacterial quorum-sensing regulation,exhibits plant-dependent stability and may be inactivated by germinating Lotus corniculatus seedlings. Laurie Delalande,Denis Faure,Aurélie Raffoux,Stéphane Uroz,Cathy d'Angelo-Picardet al. FEMS Microbiology Ecology, 2005, 52, pp.13-20. ⟨10.1016/j.femsec.2004.10.005⟩ Article dans une revue istex hal-00019093v1
Bacterial populations in the rhizosphere of tobacco plants producing the quorum-sensing signals hexanoyl-homoserine lactone and 3-oxo-hexanoyl-homoserine lactone. Cathy d'Angelo-Picard,Denis Faure,Aurélien Carlier,Stéphane Uroz,Aurélie Raffouxet al. FEMS Microbiology Ecology, 2004, 51 (1), pp.19-29. ⟨10.1016/j.femsec.2004.07.008⟩ Article dans une revue istex hal-00122912v1
The assimilation of gamma-butyrolactone in Agrobacterium tumefaciens C58 interferes with the accumulation of the N-acyl-homoserine lactone signal. Aurélien Carlier,Romain Chevrot,Yves Dessaux,Denis Faure Molecular Plant-Microbe Interactions, 2004, 17 (9), pp.951-7 Article dans une revue hal-00122349v1
Novel bacteria degrading N-acylhomoserine lactones and their use as quenchers of quorum-sensing-regulated functions of plant-pathogenic bacteria. Stéphane Uroz,Cathy d'Angelo-Picard,Aurélien Carlier,Miena Elasri,Carine Sicotet al. Microbiology, 2003, 149 (8), pp.1981-1989. ⟨10.1099/mic.0.26375-0⟩ Article dans une revue hal-00135468v1

Pré-publication, Document de travail (4)

Artificial symbiont replacement in a vertically-transmitted plant-bacterium association provides insights into the basis for specificity Léa Ninzatti,Thibault Sana,Tessa Acar,Sandra Moreau,Marie-Françoise Jardinaudet al. 2025 Pré-publication, Document de travail hal-05046391v1
Cyclitol secondary metabolism is a central feature of Burkholderia leaf symbionts Bram Danneels,Monique Blignaut,Guillaume Marti,Simon Sieber,Peter Vandammeet al. 2024 Pré-publication, Document de travail hal-04685355v1
Distinct within-host bacterial populations ensure function, colonization and transmission in leaf symbiosis Tessa Acar,Sandra Moreau,Olivier Coen,Frédéric de Meyer,Olivier Lerouxet al. 2024 Pré-publication, Document de travail hal-04685365v1
Rhizobium leguminosarum symbiovar viciae strains are natural wheat endophytes and can stimulate root development and colonization by arbuscular mycorrhizal fungi Claudia Bartoli,Stéphane Boivin,Marta Marchetti,Carine Gris,Virginie Gasciolliet al. 2020 Pré-publication, Document de travail hal-02967159v1

Logiciel (1)

CarlierLab/NanoSeq: NanoSeq v0.1.4 Aurélien Carlier,Sandra Moreau 2024, ⟨swh:1:dir:84aeefcbb005fbfcc57bf34d07e6d3bc7ed94ecf;origin=https://hal.archives-ouvertes.fr/hal-04684858;visit=swh:1:snp:ec1c1768b43b8bb46545635f17f412049c4f22dc;anchor=swh:1:rel:cd2f9e24c57d0106a8571fc9f67f035784ba0f21;path=/⟩ Logiciel hal-04684858v1

Chapitre d'ouvrage (3)

Whole-Genome Sequencing of Bacterial Endophytes From Fresh and Preserved Plant Specimens Bram Danneels,Aurélien Carlier Microbial Environmental Genomics (MEG), 2605, Springer US, pp.133-155, 2023, Methods in Molecular Biology, ⟨10.1007/978-1-0716-2871-3_7⟩ Chapitre d'ouvrage hal-04683453v1
Orrella Aurélien Carlier Bergey's Manual of Systematics of Archaea and Bacteria, John Wiley and Sons Inc, 2019, 9781118960608. ⟨10.1002/9781118960608.gbm01819⟩ Chapitre d'ouvrage hal-02790875v1
Microbial Biofilms and Quorum Sensing Aurélien Carlier,Gabriella Pessi,Leo Eberl Ben Lugtenberg. Principles of Plant-Microbe Interactions, Springer International Publishing, pp.45-52, 2015, 978-3-319-08574-6. ⟨10.1007/978-3-319-08575-3_7⟩ Chapitre d'ouvrage hal-02962307v1

Communication dans un congrès (3)

The endophyte Candidatus Burkholderia crenata of the TCM plant Ardisia crenata produces the selective Gq-inhibitor FR900359 R Reher,I Schamari,S Kehraus,S Annala,M Kuschaket al. 9th Joint Meeting of AFERP, ASP, GA, JSP, PSE & SIF, Jul 2016, Copenhague, Denmark. pp.S1-S381, ⟨10.1055/s-0036-1596736⟩ Communication dans un congrès hal-02962290v1
Optimisation d'un système d'autopartage avec contraintes de relocalisation de véhicules Aurélien Carlier,Alix Munier-Kordon,Witold Klaudel 16ème conférence ROADEF (ROADEF 2015), Feb 2015, Marseille, France Communication dans un congrès hal-01784811v1
Optimization of a one-way carsharing system with relocation operations Aurélien Carlier,Alix Munier-Kordon,Witold Klaudel 10th International Conference on Modeling, Optimization and SIMulation MOSIM 2014, Nov 2014, Nancy, France Communication dans un congrès hal-01294548v1

Thèse (1)

Optimal design of a one-way carsharing system including electric vehicles Aurélien Carlier Operations Research [math.OC]. Université Pierre et Marie Curie - Paris VI, 2016. English. ⟨NNT : 2016PA066134⟩ Thèse tel-01397234v1