Axel COURNAC

Publications

Article dans une revue (24)

RNA Pol II-based regulations of chromosome folding Christophe Chapard,Nathalie Bastié,Axel Cournac,Laura Chaptal,Henri Mboumbaet al. Cell Genomics, 2025, ⟨10.1016/j.xgen.2025.100970⟩ Article dans une revue hal-05121450v1
Parasitic plasmids are anchored to inactive regions of eukaryotic chromosomes through a nucleosome signal Fabien Girard,Antoine Even,Agnès Thierry,Myriam Ruault,Léa Meneuet al. EMBO Journal, 2025, 44 (7), pp.2134 - 2156. ⟨10.1038/s44318-025-00389-1⟩ Article dans une revue hal-05121404v1
Sister chromatid cohesion halts DNA loop expansion Nathalie Bastié,Christophe Chapard,Axel Cournac,Sanae Nejmi,Henri Mboumbaet al. Molecular Cell, 2024, 84 (6), pp.1139-1148.e5. ⟨10.1016/j.molcel.2024.02.004⟩ Article dans une revue pasteur-04603601v1
Crosstalk between Hepatitis B Virus and the 3D Genome Structure João Diogo Dias,Nazim Sarica,Axel Cournac,Romain Koszul,Christine Neuveut Viruses, 2022, 14 (2), pp.445. ⟨10.3390/v14020445⟩ Article dans une revue pasteur-03689314v1
Computer vision for pattern detection in chromosome contact maps Cyril Matthey-Doret,Lyam Baudry,Axel Breuer,Rémi Montagne,Nadège Guiglielmoniet al. Nature Communications, 2020, 11 (1), pp.5795. ⟨10.1038/s41467-020-19562-7⟩ Article dans une revue pasteur-03263561v1
Regulation of Cohesin-Mediated Chromosome Folding by Eco1 and Other Partners Lise Dauban,Rémi Montagne,Agnès Thierry,Luciana Lazar-Stefanita,Nathalie Bastiéet al. Molecular Cell, 2020, 77 (6), pp.1279-1293.e4. ⟨10.1016/j.molcel.2020.01.019⟩ Article dans une revue hal-03064572v1
FACT mediates cohesin function on chromatin Jonay Garcia-Luis,Luciana Lazar-Stefanita,Pilar Gutiérrez-Escribano,Agnès Thierry,Axel Cournacet al. Nature Structural and Molecular Biology, 2019, 26 (10), pp.970-979. ⟨10.1038/s41594-019-0307-x⟩ Article dans une revue pasteur-02866764v1
Tridimensional infiltration of DNA viruses into the host genome shows preferential contact with active chromatin Pierrick Moreau,Axel Cournac,Gianna Aurora Palumbo,Martial Marbouty,Shogofa Mortazaet al. Nature Communications, 2018, 9 (1), pp.4268. ⟨10.1038/s41467-018-06739-4⟩ Article dans une revue pasteur-02866759v1
Multiscale Structuring of the E. coli Chromosome by Nucleoid-Associated and Condensin Proteins Virginia S. Lioy,Axel Cournac,Martial Marbouty,Stéphane Duigou,Julien Mozziconacciet al. Cell, 2018, 172 (4), pp.771--783.e18. ⟨10.1016/j.cell.2017.12.027⟩ Article dans une revue hal-02180787v1
High-salt Recovered Sequences are associated with the active chromosomal compartment and with large ribonucleoprotein complexes including nuclear bodies Marie Baudement,Axel Cournac,Franck Court,Marie Seveno,Hugues Parrinelloet al. Genome Research, 2018, 28 (11), pp.1733 - 1746. ⟨10.1101/gr.237073.118⟩ Article dans une revue hal-01912447v1
Scaffolding bacterial genomes and probing host-virus interactions in gut microbiome by proximity ligation (chromosome capture) assay Martial Marbouty,Lyam Baudry,Axel Cournac,Romain Koszul Science Advances , 2017, 3 (2), pp.e1602105. ⟨10.1126/sciadv.1602105⟩ Article dans une revue pasteur-02866658v1
The 3D folding of metazoan genomes correlates with the association of similar repetitive elements Axel Cournac,Romain Koszul,Julien Mozziconacci Nucleic Acids Research, 2016, 44 (1), pp.245-255. ⟨10.1093/nar/gkv1292⟩ Article dans une revue hal-01294687v1
Generation and Analysis of Chromosomal Contact Maps of Yeast Species. Axel Cournac,Martial Marbouty,Julien Mozziconacci,Romain Koszul Methods in Molecular Biology, 2016, Yeast Functional Genomics, 1361, pp.227-45. ⟨10.1007/978-1-4939-3079-1_13⟩ Article dans une revue pasteur-01419912v1
Evidence for a dual role of actin in regulating chromosome organization and dynamics in yeast. Maya Spichal,Alice Brion,Sébastien Herbert,Axel Cournac,Martial Marboutyet al. Journal of Cell Science, 2016, 129 (4), pp.681-92. ⟨10.1242/jcs.175745⟩ Article dans une revue pasteur-01419905v1
Spatial reorganization of telomeres in long-lived quiescent cells Micol Guidi,Myriam Ruault,Martial Marbouty,Isabelle Loïodice,Axel Cournacet al. Genome Biology, 2015, 16 (1), pp.206. ⟨10.1186/s13059-015-0766-2⟩ Article dans une revue hal-01206018v1
Condensin- and Replication-Mediated Bacterial Chromosome Folding and Origin Condensation Revealed by Hi-C and Super-resolution Imaging. Martial Marbouty,Antoine Le gall,Diego I Cattoni,Axel Cournac,Alan Kohet al. Molecular Cell, 2015, 59 (4), pp.588-602. ⟨10.1016/j.molcel.2015.07.020⟩ Article dans une revue pasteur-01419993v1
Genome-wide replication landscape of Candida glabrata. Stéphane Descorps-Declère,Cyril Saguez,Axel Cournac,Martial Marbouty,Thomas Rollandet al. BMC Biology, 2015, 13, pp.69. ⟨10.1186/s12915-015-0177-6⟩ Article dans une revue pasteur-01370696v1
Filling annotation gaps in yeast genomes using genome-wide contact maps. Hervé Marie-Nelly,Martial Marbouty,Axel Cournac,Gianni Liti,Gilles Fischeret al. Bioinformatics, 2014, 30 (15), pp.2105-13. ⟨10.1093/bioinformatics/btu162⟩ Article dans une revue pasteur-01488132v1
High-quality genome (re)assembly using chromosomal contact data Hervé Marie-Nelly,Martial Marbouty,Axel Cournac,Jean-François Flot,Gianni Litiet al. Nature Communications, 2014, 5, pp.5695. ⟨10.1038/ncomms6695⟩ Article dans une revue hal-01138788v1
3D genome reconstruction from chromosomal contacts Annick Lesne,Julien Riposo,Paul Roger,Axel Cournac,Julien Mozziconacci Nature Methods, 2014, 11, pp.1141-1143. ⟨10.1038/NMETH.3104⟩ Article dans une revue hal-02324120v1
Metagenomic chromosome conformation capture (meta3C) unveils the diversity of chromosome organization in microorganisms Martial Marbouty,Axel Cournac,Jean-François Flot,Hervé Marie-Nelly,Julien Mozziconacciet al. eLife, 2014, 3, pp.e03318. ⟨10.7554/eLife.03318⟩ Article dans une revue hal-01316684v1
DNA looping in prokaryotes : experimental and theoretical approaches A. Cournac,J. Plumbridge Journal of Bacteriology, 2013, 195, pp.1109-1119 Article dans une revue hal-00825143v1
Electrostatics of DNA compaction in viruses, bacteria and eukaryotes: functional insights and evolutionary perspective Pascal Carrivain,Axel Cournac,Christophe Lavelle,Annick Lesne,Julien Mozziconacciet al. Soft Matter, 2012, 8 (36), pp.9285. ⟨10.1039/C2SM25789K⟩ Article dans une revue hal-03510086v1
Normalization of a chromosomal contact map Axel Cournac,Hervé Marie-Nelly,Martial Marbouty,Romain Koszul,Julien Mozziconacci BMC Genomics, 2012, 13 (1), pp.436. ⟨10.1186/1471-2164-13-436⟩ Article dans une revue pasteur-00769663v1

Pré-publication, Document de travail (3)

Hicberg: Reconstruction of contact signals from repeated elements Sébastien Gradit,Samuel Ortion,Pauline Larrous,Maëlys Delouis,Romain Koszulet al. 2025 Pré-publication, Document de travail hal-05121460v1
Anchoring of parasitic plasmids to inactive regions of eukaryotic chromosomes through nucleosome signal Fabien Girard,Antoine Even,Agnès Thierry,Myriam Ruault,Léa Meneuet al. 2023 Pré-publication, Document de travail hal-04278856v1
A major role for Eco1 in regulating cohesin-mediated mitotic chromosome folding Lise Dauban,Rémi Montagne,Agnès Thierry,Luciana Lazar-Stefanita,Olivier Gadalet al. 2019 Pré-publication, Document de travail hal-02362207v1

Chapitre d'ouvrage (1)

Normalization of Chromosome Contact Maps: Matrix Balancing and Visualization Cyril Matthey-Doret,Lyam Baudry,Shogofa Mortaza,Pierrick Moreau,Romain Koszulet al. Silvio Bicciato, Francesco Ferrari. Hi-C Data Analysis : methods and protocols, 2301, Springer US, pp.1-15, 2022, Methods in Molecular Biology, 978-1-0716-1390-0 (ebook). ⟨10.1007/978-1-0716-1390-0_1⟩ Chapitre d'ouvrage pasteur-03376844v1

Thèse (1)

Aspects temporel et spatial dans des systèmes de régulation génétique Axel Cournac Biophysique [physics.bio-ph]. Université Paris-Diderot - Paris VII, 2009. Français. ⟨NNT : 2009PA077255⟩ Thèse tel-00472602v1