Benjamin Marie

123
Documents

Publications

Publications

Image document

New insights into the influence of temperature and nutrients on the growth of Microcystis aeruginosa and the metabolism of its phycosphere thanks to metabolomics

Thomas Forjonel , Sylvia Moreira , Charlotte Duval , Mélissa Eon , B Marie et al.
E-TOX, May 2025, CESTAS, France. sciencesconf.org:etox2025:641286, 2025
Poster de conférence hal-05173526 v1
Image document

Sans témoin positif, pas de preuve : révéler et intégrer la vraie réponse biologique des bioessais in vitro

Iris Barjhoux , Aurore Huré , Damien Rioult , B Marie , Emilie Lance
Assemblée générale de l'UMR-I-02 SEBIO, Jul 2025, Reims, France
Poster de conférence hal-05184920 v1
Image document

Maximizing metabolome coverage and metabolism in Microcystis sp. : A comparative evaluation of monophasic and biphasic extraction-based workflow

Thomas Forjonel , Mélissa Eon , Charlotte Duval , Sylvia Moreira , Benjamin Marie et al.
RFMF, Jun 2025, Paris, France. 2025
Poster de conférence hal-05173457 v1

Influence des concentrations et du temps d’exposition au cobalt sur la réponse méta-métabolomique des biofilms de rivières

Simon Colas , Benjamin Marie , Soizic Morin , Mathieu Milhe-Poutingon , Pierre Foucault et al.
Colloque conjoint en écotoxicologie du Chapitre Saint-Laurent et EcotoQ 2024, May 2024, Québec, Canada
Poster de conférence hal-04601551 v1

The use of concentration ranges inducing defense and damage responses as a promising approach to overcome database gaps in metabolite annotation in ecotoxicology

Simon Colas , Benjamin Marie , Claude Fortin , Séverine Le Faucheur
SETAC Europe 34th Annual Meeting, May 2024, Seville, Spain
Poster de conférence hal-04591630 v1
Image document

Cyanobacteria from Balaruc-les-Bains (France): a source of therapeutic benefits for spa treatments

Justine Demay , Charlotte Duval , Cécile Bernard , Anita Reinhardt , B Marie
AlgaEurope 2024, Dec 2024, Athens, Greece
Poster de conférence hal-04942935 v1

Kinetics of meta-metabolome response to cobalt exposure in dynamic river biofilm communities

Simon Colas , Benjamin Marie , Soizic Morin , Mathieu Milhe-Poutingon , Pierre Foucault et al.
SETAC Europe 34th Annual Meeting, May 2024, Seville, Spain
Poster de conférence hal-04591639 v1

Accumulation and Effects of Cobalt in River Biofilms

Simon Colas , B Marie , Mathieu Milhe-Poutingon , Patrick Baldoni-Andrey , Amiel Boullemant et al.
SETAC Europe 32nd Annual Meeting, May 2022, Copenhagen, Denmark
Poster de conférence hal-03960637 v1
Image document

How metabolites and metabolism in aquatic biofilms reveal ecological responses to global change and their interactions

Nicolas Creusot , Juliette Tison-Rosebery , Cédric Hubas , B Marie , Joey Allen et al.
2025
Pré-publication, Document de travail hal-05017845 v1
Image document

Unraveling the Microbiome-Metabolome Nexus for Innovative One-Health Solution

Nicolas Creusot , Floriant Bellvert , Samuel Bertrand , Cédric Bertrand , Simon Colas et al.
2025
Pré-publication, Document de travail hal-05228419 v1
Image document

A wide range of applications and innovations from Ecological and Environmental research

Eric Fouilland , Nadège Blond , Sophie Boutin , Clémentine Fritsch , Françoise Gourmelon et al.
2021
Pré-publication, Document de travail hal-03426027 v1
Image document

Anti-Inflammatory, Antioxidant and Wound Healing Properties of Cyanobacteria from Thermal Mud of Balaruc-les-Bains, France: A Multi-Approach Study

Claude Yéprémian , Justine Demay , Sébastien Halary , Adeline Knittel-Obrecht , Pascal Villa et al.
2020
Pré-publication, Document de travail hal-03065984 v1
Image document

Characterization of cyanobacteria isolated from thermal muds of Balaruc-Les-Bains (France) and description of a new genus and species Pseudochroococcus couteii

Charlotte Duval , Sahima Hamlaoui , Berenice Piquet , Geraldine Toutirais , Claude Yepremian et al.
2020
Pré-publication, Document de travail hal-03065979 v1
Image document

Promising potential of high-throughput molecular phenotyping of freshwater fishes for environmental assessment

Benjamin Marie , Julie Leloup , Aurelie Bonin , Alison Gallet , Maud Mouchet
2020
Pré-publication, Document de travail hal-03080786 v1

Limnospira (Cyanobacteria) chemical fingerprint reveals local molecular adaptation

Théotime Roussel , Cédric Hubas , Sébastien Halary , Mathias Chynel , Charlotte Duval et al.
Microbiology Spectrum, In press, ⟨10.1128/spectrum.01901-24⟩
Article dans une revue mnhn-04875917 v1
Image document

A summer in the greater Paris: trophic status of peri-urban lakes shapes prokaryotic community structure and functional potential

Pierre Foucault , Sébastien Halary , Charlotte Duval , Midoli Goto , B Marie et al.
Environmental Microbiome, 2025, 20, ⟨10.1186/s40793-025-00681-x⟩
Article dans une revue hal-04953741 v1
Image document

The threat is in the details – critical gap in ecotoxicological assessment of Microcystis blooms revealed by critical distinctions of genotype effects induced on Medaka fish

Benjamin Marie , Maiwenn Le Meur , Charlotte Duval , Manon Quiquand , Emilie Lance et al.
Environmental Pollution, 2025, 387, pp.127344. ⟨10.1016/j.envpol.2025.127344⟩
Article dans une revue hal-05349474 v1
Image document

Light and temperature culture conditions impact the metabolome of the cyanobacterium of therapeutic interest Planktothricoides raciborskii PMC 877.14

Inés Seijo Touceda , Justine Demay , Charlotte Duval , Claude Yéprémian , Anita Reinhardt et al.
Algal Research - Biomass, Biofuels and Bioproducts, 2024, 84, pp.103738. ⟨10.1016/j.algal.2024.103738⟩
Article dans une revue hal-04879104 v1
Image document

Genomes of nine biofilm-forming filamentous strains of Cyanobacteria (genera Jaaginema, Scytonema and Karukerafilum gen. nov.) isolated from mangrove habitats of Guadeloupe (Lesser Antilles)

Sébastien Halary , Charlotte Duval , B Marie , Cécile Bernard , Bérénice Piquet et al.
FEMS Microbes, 2024, ⟨10.1093/femsmc/xtad024⟩
Article dans une revue mnhn-04386315 v1
Image document

Meta-metabolomic responses of river biofilms to cobalt exposure and use of dose-response model trends as an indicator of effects

Simon Colas , B Marie , Mathieu Milhe-Poutingon , Marie-Claire Lot , Amiel Boullemant et al.
Journal of Hazardous Materials, 2024, 470, pp.134099. ⟨10.1016/j.jhazmat.2024.134099⟩
Article dans une revue hal-04536517 v1
Image document

Intra-population genomic diversity of the bloom-forming cyanobacterium, Aphanizomenon gracile, at low spatial scale

Sébastien Halary , Sébastien Duperron , Sandra Kim Tiam , Charlotte Duval , Cécile Bernard et al.
ISME Communications, 2023, ⟨10.1038/s43705-023-00263-3⟩
Article dans une revue mnhn-04121048 v1
Image document

Dataset on metabolome dimorphism in different organs of mature Palaemon serratus prawn

Benjamin Marie , Romain Coulaud , Céline Boulangé-Lecomte , Pierre Foucault , Émilie Lance et al.
Data in Brief, 2023, 48, pp.109038. ⟨10.1016/j.dib.2023.109038⟩
Article dans une revue hal-04089076 v1
Image document

Multi-omics analyses from a single sample: prior metabolite extraction does not alter the 16S rRNA-based characterization of prokaryotic community in a diversity of sample types

Sébastien Duperron , Pierre Foucault , Charlotte Duval , Midoli Goto , Alison Gallet et al.
FEMS Microbiology Letters, 2023, 370, pp.fnad125. ⟨10.1093/femsle/fnad125⟩
Article dans une revue (data paper) hal-04314121 v1
Image document

Insights on the Organ-Dependent, Molecular Sexual Dimorphism in the Zebra Mussel, Dreissena polymorpha, Revealed by Ultra-High-Performance Liquid Chromatography–Tandem Mass Spectrometry Metabolomics

Emilie Lance , Lucas Sartor , Pierre Foucault , Alain Geffard , Benjamin Marie
Metabolites, 2023, 13 (10), pp.1046. ⟨10.3390/metabo13101046⟩
Article dans une revue (data paper) hal-04314097 v1
Image document

Widespread formation of intracellular calcium carbonates by the bloom‐forming cyanobacterium Microcystis

Juliette Gaëtan , Sébastien Halary , Maxime Millet , Cécile Bernard , Charlotte Duval et al.
Environmental Microbiology, 2023, 25 (3), pp.751-765. ⟨10.1111/1462-2920.16322⟩
Article dans une revue hal-04069101 v1
Image document

Disruption of fish gut microbiota composition and holobiont’s metabolome during a simulated Microcystis aeruginosa (Cyanobacteria) bloom

Alison Gallet , Sébastien Halary , Charlotte Duval , Hélène Huet , Sébastien Duperron et al.
Microbiome, 2023, 11 (1), pp.108. ⟨10.1186/s40168-023-01558-2⟩
Article dans une revue mnhn-04102614 v1
Image document

Monospecific renaming within the cyanobacterial genus <i>Limnospira</i> (Spirulina) and consequences for food authorization

Théotime Roussel , Sébastien Halary , Charlotte Duval , Bérénice Piquet , Jean-Paul Cadoret et al.
Journal of Applied Microbiology, 2023, 134, ⟨10.1093/jambio/lxad159⟩
Article dans une revue mnhn-04288948 v1
Image document

Insights on the Organ-Dependent, Molecular Sexual Dimorphism in the Zebra Mussel, Dreissena polymorpha, Revealed by Ultra-High-Performance Liquid Chromatography–Tandem Mass Spectrometry Metabolomics

Emilie Lance , Lucas Sartor , Pierre Foucault , Alain Geffard , Benjamin Marie
Metabolites, 2023, 13 (10), pp.1046. ⟨10.3390/metabo13101046⟩
Article dans une revue hal-04951091 v1
Image document

Impacts of nutrient loading and fish grazing on the phytoplankton community and cyanotoxin production in a shallow tropical lake: Results from mesocosm experiments

Mathias Ahoutou , Eric Kouamé Yao , Rosine Djeha , Mamadou Kone , Kevin Tambosco et al.
MicrobiologyOpen, 2022, 11 (2), pp.e1272. ⟨10.1002/mbo3.1278⟩
Article dans une revue hal-03662235 v1
Image document

Metagenome-Based Exploration of Bacterial Communities Associated with Cyanobacteria Strains Isolated from Thermal Muds

Sébastien Halary , Sébastien Duperron , Justine Demay , Charlotte Duval , Sahima Hamlaoui et al.
Microorganisms, 2022, 10 (12), pp.2337. ⟨10.3390/microorganisms10122337⟩
Article dans une revue mnhn-03872691 v1
Image document

Fish metabolome from sub-urban lakes of the Paris area (France) and potential influence of noxious metabolites produced by cyanobacteria

Benjamin Marie , Alison Gallet
Chemosphere, 2022, 296, pp.134035. ⟨10.1016/j.chemosphere.2022.134035⟩
Article dans une revue hal-03922408 v1
Image document

Fish gut-associated bacterial communities in a tropical lagoon (Aghien lagoon, Ivory Coast)

Alison Gallet , Eric Kouamé Yao , Pierre Foucault , Cécile Bernard , Catherine Quiblier et al.
Frontiers in Microbiology, 2022, 13, pp.963456. ⟨10.3389/fmicb.2022.963456⟩
Article dans une revue (data paper) hal-04314159 v1
Image document

Characterization of Potential Threats from Cyanobacterial Toxins in Lake Victoria Embayments and during Water Treatment

Mark Olokotum , Jean-François Humbert , Catherine Quiblier , William Okello , Ronald Semyalo et al.
Toxins, 2022, 14 (10), pp.664. ⟨10.3390/toxins14100664⟩
Article dans une revue hal-03846543 v1
Image document

Establishment of the Bacterial Microbiota in a Lab-Reared Model Teleost Fish, the Medaka Oryzias latipes

Charlotte Duval , Benjamin Marie , Pierre Foucault , Sébastien Duperron
Microorganisms, 2022, 10 (11), pp.2280. ⟨10.3390/microorganisms10112280⟩
Article dans une revue mnhn-03858402 v1
Image document

The culture collection of cyanobacteria and microalgae at the French National Museum of Natural History : a century old but still alive and kicking ! Including in memoriam: Professor Alain Couté

Sahima Hamlaoui , Claude Yéprémian , Charlotte Duval , Benjamin Marie , Chakib Djédiat et al.
Cryptogamie Algologie, 2022, 43 (3), pp.41-83. ⟨10.5252/cryptogamie-algologie2022v43a3⟩
Article dans une revue mnhn-03639293 v1
Image document

Gut microbiota and holobiont metabolome composition of the Medaka fish (<i>Oryzias latipes</i>) are affected by a short exposure to the cyanobacterium <i>Microcystis aeruginosa</i>

Pierre Foucault , Alison Gallet , Charlotte Duval , Benjamin Marie , Sébastien Duperron
Aquatic Toxicology, 2022, 253, pp.106329. ⟨10.1016/j.aquatox.2022.106329⟩
Article dans une revue (data paper) hal-04314150 v1
Image document

The success of the bloom-forming cyanobacteria Planktothrix: Genotypes variability supports variable responses to light and temperature stress

Sandra Kim Tiam , Katia Comte , Caroline Dalle , Marine Delagrange , Chakib Djediat et al.
Harmful Algae, 2022, 117, pp.102285. ⟨10.1016/j.hal.2022.102285⟩
Article dans une revue mnhn-03715509 v1
Image document

Dynamics of the Metabolome of Aliinostoc sp. PMC 882.14 in Response to Light and Temperature Variations

Damien Le Moigne , Justine Demay , Anita Reinhardt , Cécile Bernard , Sandra Kim Tiam et al.
Metabolites, 2021, 11 (11), pp.745. ⟨10.3390/metabo11110745⟩
Article dans une revue hal-03520639 v1
Image document

Diversity of cyanobacteria from thermal muds (Balaruc-Les-Bains, France) with the description of Pseudochroococcus coutei gen. nov., sp. nov.

Charlotte Duval , Sahima Hamlaoui , Bérénice Piquet , Géraldine Toutirais , Claude Yéprémian et al.
FEMS Microbes, 2021, 2, pp.xtab006. ⟨10.1093/femsmc/xtab006⟩
Article dans une revue mnhn-03220263 v1
Image document

Anatoxin-a: overview on a harmful cyanobacterial neurotoxin from the environmental scale to the molecular target

Simon Colas , Benjamin Marie , Emilie Lance , Catherine Quiblier , Hélène Tricoire-Leignel et al.
Environmental Research, 2021, 193, pp.110590. ⟨10.1016/j.envres.2020.110590⟩
Article dans une revue hal-03065970 v1
Image document

Anti-Inflammatory, Antioxidant, and Wound-Healing Properties of Cyanobacteria from Thermal Mud of Balaruc-Les-Bains, France: A Multi-Approach Study

Justine Demay , Sébastien Halary , Adeline Knittel-Obrecht , Pascal Villa , Charlotte Duval et al.
Biomolecules, 2021, 11 (1), pp.28. ⟨10.3390/biom11010028⟩
Article dans une revue hal-03091030 v1
Image document

Disentangling of the ecotoxicological signal using “omics” analyses, a lesson from the survey of the impact of cyanobacterial proliferations on fishes

Benjamin Marie
Science of the Total Environment, 2020, 736, pp.139701. ⟨10.1016/j.scitotenv.2020.139701⟩
Article dans une revue hal-03065995 v1

Deciphering shell proteome within different Baltic populations of mytilid mussels illustrates important local variability and potential consequences in the context of changing marine conditions

Jaison Arivalagan , Benjamin Marie , Giovanni Chiappetta , Joelle Vinh , Xavier Gallet et al.
Science of the Total Environment, 2020, 745, pp.140878. ⟨10.1016/j.scitotenv.2020.140878⟩
Article dans une revue hal-03086554 v1
Image document

Toxicity, transfer and depuration of anatoxin-a (cyanobacterial neurotoxin) in medaka fish exposed by single-dose gavage

Simon Colas , Charlotte Duval , Benjamin Marie
Aquatic Toxicology, In press, ⟨10.1016/j.aquatox.2020.105422⟩
Article dans une revue mnhn-02465304 v2
Image document

Microbiome-Aware Ecotoxicology of Organisms: Relevance, Pitfalls, and Challenges

Sébastien Duperron , Sébastien Halary , Alison Gallet , Benjamin Marie
Frontiers in Public Health, 2020, 8, ⟨10.3389/fpubh.2020.00407⟩
Article dans une revue hal-03065989 v1
Image document

Deciphering shell proteome within different Baltic populations of mytilid mussels illustrates important local variability and potential consequences in the context of changing marine conditions

Jaison Arivalagan , Benjamin Marie , Giovanni Chiappetta , Joëlle Vinh , Xavier Gallet et al.
Science of the Total Environment, 2020, 745, pp.140878. ⟨10.1016/j.scitotenv.2020.140878⟩
Article dans une revue mnhn-03331422 v1
Image document

Microbiome-Aware Ecotoxicology of Organisms: Relevance, Pitfalls, and Challenges

Sébastien Duperron , Sébastien Halary , Alison Gallet , Benjamin Marie
Frontiers in Public Health, 2020, 8, ⟨10.3389/fpubh.2020.00407⟩
Article dans une revue hal-03038188 v1
Image document

Draft Genome Sequence of the Toxic Freshwater Microcystis aeruginosa Strain PMC 728.11 (Cyanobacteria, Chroococcales)

Benjamin Marie , Sébastien Halary , Charlotte Duval , Alison Gallet , Sébastien Duperron et al.
Microbiology Resource Announcements, 2020, 9 (48), ⟨10.1128/MRA.01096-20⟩
Article dans une revue hal-03066008 v1
Image document

Insights into the Diversity of Secondary Metabolites of Planktothrix Using a Biphasic Approach Combining Global Genomics and Metabolomics

Sandra Kim Tiam , Muriel Gugger , Justine Demay , Séverine Le Manach , Charlotte Duval et al.
Toxins, 2019, 11 (9), pp.498. ⟨10.3390/toxins11090498⟩
Article dans une revue hal-03066048 v1
Image document

Development of a new extraction method based on high-intensity ultra-sonication to study RNA regulation of the filamentous cyanobacteria Planktothrix

Sandra Kim Tiam , Katia Comte , Caroline Dalle , Charlotte Duval , Claire Pancrace et al.
Article dans une revue mnhn-02292170 v1
Image document

Specificity of the metabolic signatures of fish from cyanobacteria rich lakes

Benoît Sotton , Alain Paris , Séverine Le Manach , Alain Blond , Charlotte Duval et al.
Chemosphere, 2019, 226, pp.183-191. ⟨10.1016/j.chemosphere.2019.03.115⟩
Article dans une revue mnhn-02299394 v1
Image document

Global Metabolomic Characterizations of Microcystis spp. Highlights Clonal Diversity in Natural Bloom-Forming Populations and Expands Metabolite Structural Diversity

Séverine Le Manach , Charlotte Duval , Arul Marie , Chakib Djediat , Arnaud Catherine et al.
Frontiers in Microbiology, 2019, 10, ⟨10.3389/fmicb.2019.00791⟩
Article dans une revue mnhn-02292192 v1
Image document

Subcellular localization of microcystin in the liver and the gonads of medaka fish acutely exposed to microcystin-LR

Qin Qiao , Chakib Djediat , Hélène Huet , Charlotte Duval , Séverine Le Manach et al.
Toxicon, 2019, 159, pp.14-21. ⟨10.1016/j.toxicon.2018.12.006⟩
Article dans une revue mnhn-02293039 v1
Image document

Response of Fish Gut Microbiota to Toxin-Containing Cyanobacterial Extracts: a Microcosm Study on the Medaka (Oryzias latipes)

Sébastien Duperron , Sebastien Halary , Myriam Habiballah , Alison Gallet , Hèlene H. Huet et al.
Environmental Science and Technology, 2019, ⟨10.1021/acs.estlett.9b00297⟩
Article dans une revue mnhn-02434586 v1
Image document

Light stress in green and red Planktothrix strains: The orange carotenoid protein and its related photoprotective mechanism

Chakib Djediat , Kathleen Feilke , Arthur Brochard , Lucie Caramelle , Sandra Kim Tiam et al.
Biochimica biophysica acta (BBA) - Bioenergetics, In press, ⟨10.1016/j.bbabio.2019.06.009⟩
Article dans une revue mnhn-02299430 v1
Image document

Natural Products from Cyanobacteria: Focus on Beneficial Activities

Justine Demay , Cécile Bernard , Anita Reinhardt , Benjamin Marie
Marine drugs, 2019, 17 (6), pp.320. ⟨10.3390/md17060320⟩
Article dans une revue mnhn-02291437 v1
Image document

Molecular modularity and asymmetry of the molluscan mantle revealed by a gene expression atlas.

Ines Herlitze , Benjamin Marie , Frédéric Marin , Daniel J. Jackson
GigaScience, 2018, 7 (6), pp.giy056. ⟨10.1093/gigascience/giy056⟩
Article dans une revue hal-01821730 v1
Image document

Neurotoxin stress-driven evolution in scallop genome

Benjamin Marie
Toxicon, 2018, 150, pp.251-252. ⟨10.1016/j.toxicon.2018.06.071⟩
Article dans une revue hal-03066065 v1

Physiological effects caused by microcystin-producing and non-microcystin producing Microcystis aeruginosa on medaka fish: A proteomic and metabolomic study on liver

Séverine Le Manach , Benoît Sotton , Hèlene H. Huet , Charlotte Duval , Alain Paris et al.
Environmental Pollution, 2018, 234, pp.523-537. ⟨10.1016/j.envpol.2017.11.011⟩
Article dans une revue hal-02358315 v1

Global metabolome changes induced by cyanobacterial blooms in three representative fish species

Benoît Sotton , Alain Paris , Severine Le Manach , Alain Blond , Gérard Lacroix et al.
Science of the Total Environment, 2017, 590, pp.333-342. ⟨10.1016/j.scitotenv.2017.03.016⟩
Article dans une revue hal-01602675 v1
Image document

Metabolic changes in Medaka fish induced by cyanobacterial exposures in mesocosms: an integrative approach combining proteomic and metabolomic analyses

Benoit Sotton , Alain Paris , Séverine Le Manach , Alain Blond , Gérard Lacroix et al.
Scientific Reports, 2017, 7 (1), ⟨10.1038/s41598-017-04423-z⟩
Article dans une revue hal-01636500 v1
Image document

Insights from the Shell Proteome: Biomineralization to Adaptation

Jaison Arivalagan , Tejaswi Yarra , Benjamin Marie , Victoria Sleight , Evelyne Duvernois-Berthet et al.
Molecular Biology and Evolution, 2017, 34 (1), pp.66-77. ⟨10.1093/molbev/msw219⟩
Article dans une revue hal-03370644 v1
Image document

First proteomic analyses of the dorsal and ventral parts of the Sepia officinalis cuttlebone

Charles Le Pabic , Arul Marie , Benjamin Marie , Aline Percot , Laure Bonnaud-Ponticelli et al.
Journal of Proteomics, 2017, 150, pp.63-73. ⟨10.1016/j.jprot.2016.08.015⟩
Article dans une revue hal-02557239 v1
Image document

Deep conservation of bivalve nacre proteins highlighted by shell matrix proteomics of the Unionoida Elliptio complanata and Villosa lienosa.

Benjamin Marie , Jaison Arivalagan , Lucrèce Mathéron , Gérard Bolbach , Sophie Berland et al.
Journal of the Royal Society Interface, 2017, 14 (126), pp.20160846. ⟨10.1098/rsif.2016.0846⟩
Article dans une revue hal-01470764 v1

Formation mechanism and properties of twinned structures in (111) seeded directionally solidified solar grade silicon

V.A. Oliveira , B. Marie , C. Cayron , Maya Marinova , M.G. Tsoutsouva et al.
Acta Materialia, 2016, Acta Materialia, 121, pp.24-36. ⟨10.1016/j.actamat.2016.08.063⟩
Article dans une revue istex hal-02509401 v1
Image document

Deep sexual dimorphism in adult medaka fish liver highlighted by multi-omic approach

Qin Qiao , Séverine Le Manach , Benoit Sotton , Hélène Huet , Evelyne Duvernois-Berthet et al.
Scientific Reports, 2016, 6, pp.32459. ⟨10.1038/srep32459⟩
Article dans une revue hal-01368277 v1

An integrated omic analysis of hepatic alteration in medaka fish chronically exposed to cyanotoxins with possible mechanisms of reproductive toxicity

Qin Qiao , Séverine Le Manach , Hélène Huet , Evelyne Duvernois-Berthet , Soraya Chaouch et al.
Environmental Pollution, 2016, 219, pp.119 - 131. ⟨10.1016/j.envpol.2016.10.029⟩
Article dans une revue istex hal-01493865 v1

Gender-Specific Toxicological Effects of Chronic Exposure to Pure Microcystin-LR or Complex Microcystis aeruginosa Extracts on Adult Medaka Fish

Séverine Le Manach , Nour Khenfech , Hélène Huet , Qin Qiao , Charlotte Duval et al.
Environmental Science and Technology, 2016, 50 (15), pp.8324 - 8334. ⟨10.1021/acs.est.6b01903⟩
Article dans une revue hal-01493981 v1
Image document

Characterization of defects in mono-like silicon for photovoltaic applications using X-ray Bragg diffraction imaging

M. G. Tsoutsouva , V. A. Oliveira , J. Baruchel , D. Camel , B. Marie et al.
Journal of Applied Crystallography, 2015, 48, pp.645-654. ⟨10.1107/S1600576715004926⟩
Article dans une revue hal-01572842 v1

Metazoan calcium carbonate biomineralizations: macroevolutionary trends - challenges for the coming decade.

Frédéric Marin , Nathalie Le Roy , Benjamin Marie , Paula Ramos-Silva , Irina A. Bundeleva et al.
Bulletin de la Société Géologique de France, 2014, 185 (4), pp.217-232. ⟨10.2113/gssgfbull.185⟩
Article dans une revue hal-01079680 v1

The shell organic matrix of the crossed lamellar queen conch shell (Strombus gigas).

Antonio Osuna-Mascaró , Teresa Cruz-Bustos , Sana Benhamada , Nathalie Guichard , Benjamin Marie et al.
Comparative Biochemistry and Physiology - Part B: Biochemistry and Molecular Biology, 2014, 168, pp.76-85. ⟨10.1016/j.cbpb.2013.11.009⟩
Article dans une revue istex hal-00923994 v1
Image document

The evolution of metazoan α-carbonic anhydrases and their roles in calcium carbonate biomineralization.

Nathalie Le Roy , Daniel J. Jackson , Benjamin Marie , Paula Ramos-Silva , Frédéric Marin
Frontiers in Zoology, 2014, 11, pp.75. ⟨10.1186/s12983-014-0075-8⟩
Article dans une revue (article de synthèse) hal-01100241 v1

Biomineralization toolkit: the importance of sample cleaning prior to the characterization of biomineral proteomes.

Paula Ramos-Silva , Frédéric Marin , Jaap Kaandorp , Benjamin Marie
Proceedings of the National Academy of Sciences of the United States of America, 2013, 110 (24), pp.E2144-6. ⟨10.1073/pnas.1303657110⟩
Article dans une revue hal-00836842 v1

The shell-forming proteome of Lottia gigantea reveals both deep conservations and lineage-specific novelties.

Benjamin Marie , Daniel J. Jackson , Paula Ramos-Silva , Isabelle Zanella-Cléon , Nathalie Guichard et al.
FEBS Journal, 2013, 280 (1), pp.214-232. ⟨10.1111/febs.12062⟩
Article dans une revue hal-00771503 v1

The skeletal proteome of the coral Acropora millepora: the evolution of calcification by co-option and domain shuffling.

Paula Ramos-Silva , Jaap Kaandorp , Lotte Huisman , Benjamin Marie , Isabelle Zanella-Cléon et al.
Molecular Biology and Evolution, 2013, 30 (9), pp.2099-2112. ⟨10.1093/molbev/mst109⟩
Article dans une revue hal-00853820 v1
Image document

Living in a hot redox soup: antioxidant defences of the hydrothermal worm Alvinella pompejana

Bertrand Genard , Benjamin Marie , Eleonore Loumaye , Bernard Knoops , Pierre Legendre et al.
Aquatic Biology, 2013, 18 (3), pp.217-228. ⟨10.3354/ab00498⟩
Article dans une revue hal-01250912 v1

Proteomics of CaCO3 biomineral-associated proteins: how to properly address their analysis.

Benjamin Marie , Paula Ramos-Silva , Frédéric Marin , Arul Marie
Proteomics, 2013, 13 (21), pp.3109-3116. ⟨10.1002/pmic.201300162⟩
Article dans une revue hal-00954233 v1

Novel molluskan biomineralization proteins retrieved from proteomics: a case study with upsalin.

Paula Ramos-Silva , Sana Benhamada , Nathalie Le Roy , Benjamin Marie , Nathalie Guichard et al.
ChemBioChem, 2012, 13 (7), pp.1067-1078. ⟨10.1002/cbic.201100708⟩
Article dans une revue hal-00694920 v1

The formation and mineralization of mollusk shell.

Frédéric Marin , Nathalie Le Roy , Benjamin Marie
Frontiers in Bioscience, 2012, S4, pp.1099-1125. ⟨10.2741/321⟩
Article dans une revue hal-00657792 v1

Identification of two carbonic anhydrases in the mantle of the European abalone Haliotis tuberculata (Gastropoda, Haliotidae): phylogenetic implications.

Nathalie Le Roy , Benjamin Marie , Béatrice Gaume , Nathalie Guichard , Sidney Delgado et al.
Journal of Experimental Zoology Part B: Molecular and Developmental Evolution, 2012, 318 (5), pp.353-367. ⟨10.1002/jez.b.22452⟩
Article dans une revue istex hal-00711230 v1
Image document

Different secretory repertoires control the biomineralization processes of prism and nacre deposition of the pearl oyster shell.

Benjamin Marie , Caroline Joubert , Alexandre Tayalé , Isabelle Zanella-Cléon , Corinne Belliard et al.
Proceedings of the National Academy of Sciences of the United States of America, 2012, 109 (51), pp.20986-20991. ⟨10.1073/pnas.1210552109⟩
Article dans une revue hal-00786507 v1

Characterization of MRNP34, a novel methionine-rich nacre protein from the pearl oysters.

Benjamin Marie , Caroline Joubert , Corinne Belliard , Alexandre Tayalé , Isabelle Zanella-Cléon et al.
Amino Acids, 2012, 42 (5), pp.2009-2017. ⟨10.1007/s00726-011-0932-0⟩
Article dans une revue istex hal-00687965 v1

Proteomic strategy for identifying mollusc shell proteins using mild chemical degradation and trypsin digestion of insoluble organic shell matrix: a pilot study on Haliotis tuberculata.

Laurent Bédouet , Arul Marie , Sophie Berland , Benjamin Marie , Stéphanie Auzoux-Bordenave et al.
Marine Biotechnology, 2012, 14 (4), pp.446-458. ⟨10.1007/s10126-011-9425-0⟩
Article dans une revue istex hal-00708791 v1

Molecular evolution of mollusc shell proteins: insights from proteomic analysis of the edible mussel Mytilus.

Benjamin Marie , Nathalie Le Roy , Isabelle Zanella-Cléon , Michel Becchi , Frédéric Marin
Journal of Molecular Evolution, 2011, 72 (5-6), pp.531-546. ⟨10.1007/s00239-011-9451-6⟩
Article dans une revue istex hal-00614928 v1

Nautilin-63, a novel acidic glycoprotein from the shell nacre of Nautilus macromphalus.

Benjamin Marie , Isabelle Zanella-Cléon , Marion Corneillat , Michel Becchi , Gérard Alcaraz et al.
FEBS Journal, 2011, 278 (12), pp.2117-2130. ⟨10.1111/j.1742-4658.2011.08129.x⟩
Article dans une revue hal-00601453 v1

Novel proteins from the calcifying shell matrix of the Pacific oyster Crassostrea gigas.

Benjamin Marie , Isabelle Zanella-Cléon , Nathalie Guichard , Michel Becchi , Frédéric Marin
Marine Biotechnology, 2011, 13 (6), pp.1159-1168. ⟨10.1007/s10126-011-9379-2⟩
Article dans une revue istex hal-00638291 v1

Pmarg-pearlin is a matrix protein involved in nacre framework formation in the pearl oyster Pinctada margaritifera.

Caroline Montagnani , Benjamin Marie , Frédéric Marin , Corinne Belliard , F. Riquet et al.
ChemBioChem, 2011, 12 (13), pp.2033-2043. ⟨10.1002/cbic.201100216⟩
Article dans une revue istex hal-00624402 v1

Proteomic identification of novel proteins from the calcifying shell matrix of the Manila clam Venerupis philippinarum.

Benjamin Marie , Nolwenn Trinkler , Isabelle Zanella-Cléon , Nathalie Guichard , Michel Becchi et al.
Marine Biotechnology, 2011, 13 (5), pp.955-962. ⟨10.1007/s10126-010-9357-0⟩
Article dans une revue istex hal-00614936 v1
Image document

Transcriptome and proteome analysis of Pinctada margaritifera calcifying mantle and shell: focus on biomineralization

Caroline Joubert , David Piquemal , Benjamin Marie , Laurent Manchon , Fabien Pierrat et al.
BMC Genomics, 2010, 11 (1), ⟨10.1186/1471-2164-11-613⟩
Article dans une revue hal-02867261 v1

Transcriptome and proteome analysis of Pinctada margaritifera calcifying mantle and shell: focus on biomineralization.

Caroline Joubert , David Piquemal , Benjamin Marie , Laurent Manchon , Fabien Pierrat et al.
BMC Genomics, 2010, 11, pp.613. ⟨10.1186/1471-2164-11-613⟩
Article dans une revue hal-00542855 v1

Proteomic analysis of the organic matrix of the abalone Haliotis asinina calcified shell.

Benjamin Marie , Arul Marie , Daniel J. Jackson , Lionel Dubost , Bernard M. Degnan et al.
Proteome Science, 2010, 8, pp.54. ⟨10.1186/1477-5956-8-54⟩
Article dans une revue hal-00540468 v1

Proteomic analysis of the acid-soluble nacre matrix of the bivalve Unio pictorum: detection of novel carbonic anhydrase and putative protease inhibitor proteins.

Benjamin Marie , Isabelle Zanella-Cléon , Nathalie Le Roy , Michel Becchi , Gilles Luquet et al.
ChemBioChem, 2010, 11 (15), pp.2138-2147. ⟨10.1002/cbic.201000276⟩
Article dans une revue istex hal-00526506 v1

Evolution of nacre: biochemistry and proteomics of the shell organic matrix of the cephalopod Nautilus macromphalus.

Benjamin Marie , Frédéric Marin , Arul Marie , Laurent Bédouet , Lionel Dubost et al.
ChemBioChem, 2009, 10, pp.1495-1506. ⟨10.1002/cbic.200900009⟩
Article dans une revue hal-00392866 v1

Nacre calcification in the freshwater mussel Unio pictorum: carbonic anhydrase activity and purification of a 95 kDa calcium-binding glycoprotein.

Benjamin Marie , Gilles Luquet , Laurent Bédouet , Christian Milet , Nathalie Guichard et al.
ChemBioChem, 2008, 9 (15), pp.2515-2523. ⟨10.1002/cbic.200800159⟩
Article dans une revue istex hal-00326810 v1

Shell repair process in the green ormer Haliotis tuberculata: a histological and microstructural study.

C. Fleury , Frédéric Marin , Benjamin Marie , Gilles Luquet , Jérôme Thomas et al.
Tissue and Cell, 2008, 40 (3), pp.207-218. ⟨10.1016/j.tice.2007.12.002⟩
Article dans une revue hal-00275440 v1

Shell repair process in the green ormer Haliotis tuberculata: A histological and microstructural study

C. Fleury , F. Marin , B. Marie , G. Luquet , J. Thomas et al.
Tissue and Cell, 2008, 40 (3), pp.207-218. ⟨10.1016/j.tice.2007.12.002⟩
Article dans une revue hal-02278088 v1

Biochemical characteristics of the soluble organic matrix from the shell of three recent terebratulid brachiopod species.

Danièle Gaspard , Benjamin Marie , Gilles Luquet , Frédéric Marin
Fossils and Strata, 2008, 54, pp.269-275
Article dans une revue hal-00295707 v1

Molluscan shell proteins: primary structure, origin, and evolution.

Frédéric Marin , Gilles Luquet , Benjamin Marie , Davorin Medakovic
Current Topics in Developmental Biology, 2008, 80, pp.209-276. ⟨10.1016/S0070-2153(07)80006-8⟩
Article dans une revue hal-00197133 v1

The shell matrix of the freshwater mussel Unio pictorum (Paleoheterodonta, Unionoida). Involvement of acidic polysaccharides from glycoproteins in nacre mineralization.

Benjamin Marie , Gilles Luquet , Jean-Paul Pais de Barros , Nathalie Guichard , Sylvain Morel et al.
FEBS Journal, 2007, 274 (11), pp.2933-2945. ⟨10.1111/j.1742-4658.2007.05825.x⟩
Article dans une revue hal-00197094 v1

The trypsin-induced leucostasis which leads to emphysema in the hamster is not due to contaminating endotoxins

E. Reichart , P. Boerkmann , F. Plenat , B. Marie , Françoise Rogerieux et al.
Journal of Pathology, 1996, 178 (2), pp.215-220. ⟨10.1002/(sici)1096-9896(199602)178:2<215::aid-path435>3.0.co;2-k⟩
Article dans une revue istex ineris-03166482 v1
Image document

Metagenome-scale metabolic modelling for the characterization of cross-feeding interactions in freshwater cyanobacteria-associated microbial communities

Juliette Audemard , Nicolas Creusot , Julie Leloup , Charlotte Duval , Sébastien Halary et al.
JOBIM 2025 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2025, Bordeaux, France
Communication dans un congrès hal-05281552 v1

Metabolomic response of biofilms exposed to cobalt in short-term experiments

Simon Colas , B Marie , Mathieu Milhe-Poutingon , Patrick Baldoni-Andrey , Amiel Boullemant et al.
SETAC North America 43rd annual meeting, SETAC, Nov 2022, Pittsburgh (Pennsylvania), France
Communication dans un congrès hal-03960363 v1

Effets du cobalt sur les communautés de diatomées en cours d’eau

Simon Colas , Soizic Morin , B Marie , Mathieu Milhe-Poutingon , Patrick Baldoni-Andrey et al.
40ème Colloque de l’Association des Diatomistes de Langue Française (ADLaF), Sep 2022, Clermont-Ferrand, France
Communication dans un congrès hal-03791606 v1

A Metabolomic Approach to Determine the Effects of Cobalt on River Biofilms

Simon Colas , B Marie , Mathieu Milhe-Poutingon , Patrick Baldoni-Andrey , Amiel Boullemant et al.
7th Aquatic Biofilm Workshop, Jun 2022, Bordeaux, France
Communication dans un congrès hal-03960414 v1

Oil-solid combination for dual-media thermocline storage: from media choice to system modelling,

Sophie Molina , Didier Haillot , B Marie , A. Deydier , Jean-Pierre Bedecarrats
31st International Conference on Efficiency, Cost, Optimization, Simulation and Environmental Impact of Energy Systems (ECOS 2018), June 17–21st 2018, 2018, Guimarães, Portugal
Communication dans un congrès hal-02163055 v1

Synthesis of calcium carbonate biological materials: how many proteins are needed?

Frédéric Marin , Nathalie Le Roy , Benjamin Marie , Paula Ramos-Silva , Stephan E. Wolf et al.
25th Symposium and Annual Meeting of the International Society for Ceramics in Medicine, Nov 2013, Bucarest, Romania. pp.52-61, ⟨10.4028/www.scientific.net/KEM.614.52⟩
Communication dans un congrès hal-01001671 v1

Shellome': Proteins involved in mollusk shell biomineralization - diversity, functions.

Frédéric Marin , Benjamin Marie , Sana Benhamada , Paula Ramos-Silva , Nathalie Le Roy et al.
International Symposium on Pearl Research, Oct 2011, Tokyo, Japan. pp.149-166
Communication dans un congrès hal-00793668 v1

Characterization of molecular processes involved in the pearl formation in Pinctada margaritifera for the sustainable development of pearl farming industry in French Polynesia.

Yannick Gueguen , Caroline Montagnani , Caroline Joubert , Benjamin Marie , Corinne Belliard et al.
International Symposium on Pearl Research, Oct 2011, Tokyo, Japan. pp.183-193
Communication dans un congrès hal-00793672 v1

Nacre evolution: a proteomic approach.

Benjamin Marie , Nathalie Le Roy , Arul Marie , Lionel Dubost , Christian Milet et al.
MRS Spring Meeting, Apr 2009, San Francisco, United States. pp.3-8
Communication dans un congrès hal-00441257 v1

Characterization of crustacyanin-A2 subunit as a component of the organic matrix of gastroliths from the crayfish Cherax quadricarinatus.

Gilles Luquet , Nathalie Le Roy , Isabelle Zanella-Cléon , Michel Becchi , Sergio Bucarey et al.
MRS Spring Meeting, Apr 2009, San Francisco, United States. pp.69-75
Communication dans un congrès hal-00441263 v1

Calcification in the Shell of the Freshwater Bivalve Unio pictorum.

Benjamin Marie , Nathalie Guichard , Jean-Paul Pais de Barros , Gilles Luquet , Frédéric Marin
9th International Symposium on Biomineralization, Dec 2005, Pucón, Chile. pp.273-280
Communication dans un congrès hal-00197064 v1
Image document

Caspartin: thermal stability and occurrence in mollusk calcified tissues

Frédéric Marin , Virginie Morin , Frédéric Knap , Nathalie Guichard , Benjamin Marie et al.
9th International Symposium on Biomineralization, Dec 2005, Pucón, Chile. pp.281-288
Communication dans un congrès hal-00197158 v1

Biochemical characteristics of the shell soluble organic matrix of some recent Rhynchonelliformea (Brachiopoda).

Danièle Gaspard , Benjamin Marie , Nathalie Guichard , Gilles Luquet , Frédéric Marin
9th International Symposium on Biomineralization, Dec 2005, Pucón, Chile. pp.193-204
Communication dans un congrès hal-00197010 v1

Biochemical Characterization of the Soluble Organic Matrix of Gastroliths from Decapods.

Gilles Luquet , María Soledad Fernández , María J. Navarrete , José L. Arias , Nathalie Guichard et al.
9th International Symposium on Biomineralization, Dec 2005, Pucón, Chile. pp.319-328
Communication dans un congrès hal-00197051 v1

Analysis of pesticides and metals in freshwater biofilms: development of a methodology for studying environmental impact associated to pesticides treatment on vineyards

Marina Coquery , C. Margoum , J. Gahou , M. Barasc , Nicolas Faure et al.
3rd SWIFT-WFD Workshop, Barcelone, ESP, Mai 2006, 2006, pp.1
Communication dans un congrès hal-02588399 v1

The trypsin-induced leucostasis which leads to emphysema in the hamster is not due to contaminating endotoxins

E. Reichart , P. Boerkmann , F. Plenat , B. Marie , Claude Lambre
European Respiratory Society Annual Congress 1994, Oct 1994, Nice, France
Communication dans un congrès ineris-00969637 v1

Bioassay Use in the Field of Toxic Cyanobacteria

Luděk Bláha , Ana Maria , Valérie Fessard , Daniel Gutierrez-Praena , Angeles Jos et al.
Wiley. Handbook of Cyanobacterial Monitoring and Cyanotoxin Analysis, 27, , pp.272-279, 2016, 9781119068761. ⟨10.1002/9781119068761.ch27⟩
Chapitre d'ouvrage anses-01637568 v1

Carbonic anhydrase and metazoan biocalcification: a focus on molluscs.

Nathalie Le Roy , D.J. Jackson , Benjamin Marie , Paula Ramos-Silva , Frédéric Marin
F. Marin, F. Brümmer, A. Checa, G. Furtos, I.G. Lesci & L. Šiller. Biomineralization: from fundamentals to biomaterials & environmental issues, 672, Trans Tech Publications Ltd, pp.151-157, 2015, Key Engineering Materials, 978-3-03835-591-5
Chapitre d'ouvrage hal-01194531 v1

Unveiling the evolution of bivalve nacre proteins by shell proteomics of Unionoidae.

Benjamin Marie , J. Arivalagan , L. Dubost , S. Berland , Arul Marie et al.
F. Marin, F. Brümmer, A. Checa, G. Furtos, I.G. Lesci & L. Šiller. Biomineralization: from fundamentals to biomaterials & environmental issues, 672, Trans Tech Publications Ltd, pp.158-167, 2015, Key Engineering Materials, 978-3-03835-591-5
Chapitre d'ouvrage hal-01194537 v1

Heavy metals in mollusc shells: a quick method for their detection.

Antonio Osuna-Mascaró , Teresa Cruz-Bustos , Benjamin Marie , Antonio G. Checa , Frédéric Marin
F. Marin, F. Brümmer, A. Checa, G. Furtos, I.G. Lesci & L. Šiller. Biomineralization: from fundamentals to biomaterials & environmental issues, 672, Trans Tech Publications Ltd, pp.340-346, 2015, Key Engineering Materials, 978-3-03835-591-5
Chapitre d'ouvrage hal-01194706 v1