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CoNIC Challenge: Pushing the frontiers of nuclear detection, segmentation, classification and counting
Simon Graham
,
Quoc Dang Vu
,
Mostafa Jahanifar
,
Martin Weigert
,
Uwe Schmidt
et al.
Article dans une revue
hal-04408256
v1
|
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A first complete catalog of highly expressed genes in eight chicken tissues reveals uncharacterized gene families specific for the chicken testis
Benoît Piégu
,
Gaëlle Lefort
,
Cécile Douet
,
Marine Milhes
,
Aurore Jacques
et al.
Article dans une revue
hal-04637057
v1
|
|
Chronic dietary exposure to a glyphosate-based herbicide alters ovarian functions in young female broilers
Mathias Freville
,
Anthony Estienne
,
Christelle Ramé
,
Gaëlle Lefort
,
Benoît Piégu
et al.
Article dans une revue
hal-04667780
v1
|
|
Facial blushing and feather fluffing are indicators of emotions in domestic fowl (Gallus gallus domesticus)
Cécile Arnould
,
Scott Love
,
Benoît Piégu
,
Gaëlle Lefort
,
Marie-Claire Blache
et al.
Article dans une revue
hal-04668790
v1
|
|
Transitive reasoning in the adult domestic hen in a six-term series task
R. Degrande
,
O. Amichaud
,
Benoît Piégu
,
F. Cornilleau
,
P. Jardat
et al.
Article dans une revue
hal-04840794
v1
|
|
Effect of the social environment on olfaction and social skills in wild-type and a mouse model of autism
Caroline Gora
,
Ana Dudas
,
Lucas Court
,
Anil Annamneedi
,
Gaëlle Lefort
et al.
Article dans une revue
hal-04785377
v1
|
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Genes encoding intracellular signalling proteins in animals originated primarily in Opisthokonta and Vertebrata: Chance or necessity?
Floriane Picolo
,
J. Bardin
,
Michel Laurin
,
Benoît Piégu
,
Philippe Monget
Genome Biology and Evolution, In press
Article dans une revue
hal-04720921
v1
|
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Exploration of skin redness and immunoglobulin A as markers of the affective states of hens
Delphine Soulet
,
Anissa Jahoui
,
Rodrigo Guabiraba
,
Léa Lansade
,
Marie-Claire Blache
et al.
Article dans une revue
hal-04574339
v1
|
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Seasonal remodeling of the progenitor pool and its distribution in the ewe mediobasal hypothalamus
Pierre-Marie Chevillard
,
Martine Batailler
,
Jean-Philippe Dubois
,
Anthony Estienne
,
Delphine Pillon
et al.
Article dans une revue
hal-04233205
v1
|
|
Genes encoding teleost orthologues of human signal transduction proteins remain duplicated or triplicated more frequently than the whole genome
Floriane Picolo
,
Benoît Piégu
,
Philippe Monget
Article dans une revue
hal-04250936
v1
|
|
Combined multiplexed phage display, high-throughput sequencing, and functional assays as a platform for identifying modulatory VHHs targeting the FSHR
Anielka Zehnaker
,
Amandine Vallet
,
Juliette Gourdon
,
Caterina Sarti
,
Vinesh Jugnarain
et al.
Article dans une revue
hal-04274818
v1
|
|
Research fellowship in antibody fragments targeting ovarian GPCRs to control reproduction
Anielka Zehnaker
,
Amandine Vallet
,
Juliette Gourdon
,
Caterina Sarti
,
Vinesh Jugnarain
et al.
Article dans une revue
hal-05077961
v1
|
|
Seasonal vascular plasticity in the mediobasal hypothalamus of the adult ewe
Pierre-Marie Chevillard
,
Martine Batailler
,
Benoit Piegu
,
Anthony Estienne
,
Marie-Claire Blache
et al.
Article dans une revue
hal-03746290
v1
|
|
Expanding duplication of the testis PHD Finger Protein 7 (PHF7) gene in the chicken genome
Sophie Fouchécourt
,
Valérie Fillon
,
Christelle Marrauld
,
Caroline Callot
,
Sarah Ronsin
et al.
Article dans une revue
hal-03746220
v1
|
|
Genes encoding teleost orthologs of human haploinsufficient and monoallelically expressed genes remain in duplicate more frequently than the whole genome
Floriane Picolo
,
Anna Grandchamp
,
Benoit Piegu
,
Antoine D. Rolland
,
Reiner A. Veitia
et al.
Article dans une revue
hal-03341375
v1
|
|
The piggyBac-derived protein 5 (PGBD5) transposes both the closely and the distantly related piggyBac-like elements Tcr-pble and Ifp2
Laura Helou
,
Linda Beauclair
,
Hugues Dardente
,
Benoit Piegu
,
Louis Tsakou-Ngouafo
et al.
Article dans une revue
hal-03149600
v1
|
|
Variations in genome size between wild and domesticated lineages of fowls belonging to the Gallus gallus species
Benoit Piegu
,
Peter Arensburger
,
Linda Beauclair
,
Marie Chabault-Dhuit Chabault
,
Emilie Raynaud
et al.
Article dans une revue
hal-02385792
v1
|
|
Relative effects of location relative to the corpus luteum and lactation on the transcriptome of the bovine oviduct epithelium
Yann Locatelli
,
Niamh Forde
,
Helmut Blum
,
Alexander Graf
,
Benoit Piegu
et al.
Article dans une revue
hal-02625626
v1
|
|
Thermal Manipulation During Embryogenesis Impacts H3K4me3 and H3K27me3 Histone Marks in Chicken Hypothalamus
Sarah-Anne David
,
Anais Vitorino Carvalho
,
Coralie Gimonnet
,
Aurélien Brionne
,
Christelle Hennequet-Antier
et al.
Article dans une revue
hal-02385835
v1
|
|
Perturbation of mRNP biogenesis reveals a dynamic landscape of the Rrp6-dependent surveillance machinery trafficking along the yeast genome
Kévin Moreau
,
Aurélia Le Dantec
,
Christine Mosrin-Huaman
,
Yves Bigot
,
Benoit Piegu
et al.
Article dans une revue
hal-02117640
v1
|
|
Genes Encoding Teleost Fish Ligands and Associated Receptors Remained in Duplicate More Frequently than the Rest of the Genome
Anna Grandchamp
,
Benoit Piegu
,
Philippe Monget
Article dans une revue
hal-02628416
v1
|
|
Sequence properties of certain GC rich avian genes, their origins and absence from genome assemblies: case studies
Linda Beauclair
,
Christelle Rame
,
Peter Arensburger
,
Benoit Piegu
,
Florian Guillou
et al.
Article dans une revue
hal-02623183
v1
|
|
But where did the centromeres go in the chicken genome models?
Benoit Piegu
,
Peter Arensburger
,
Florian Guillou
,
Yves Bigot
Article dans une revue
hal-02385805
v1
|
|
Anti-angiogenic VEGFAxxxb transcripts are not expressed in the medio-basal hypothalamus of the seasonal sheep
Didier Lomet
,
Benoit Piegu
,
Shona H. Wood
,
Hugues Dardente
Article dans une revue
hal-02628294
v1
|
|
An assessment of fixed and native chromatin preparation methods to study histone post-translational modifications at a whole genome scale in skeletal muscle tissue
Sarah-Anne David
,
Benoit Piegu
,
Christelle Hennequet-Antier
,
Maëlle Pannetier
,
Tiphaine Aguirre-Lavin
et al.
Article dans une revue
hal-01608235
v1
|
|
Deep landscape update of dispersed and tandem repeats in the genome model of the red jungle fowl, Gallus gallus, using a series of de novo investigating tools
Sébastien Guizard
,
Benoit Piegu
,
Peter Arensburger
,
Florian Guillou
,
Yves Bigot
Article dans une revue
hal-01405418
v1
|
|
Mariner Transposons Contain a Silencer: Possible Role of the Polycomb Repressive Complex 2
Solenne Bire
,
Sophie Casteret
,
Benoit Piegu
,
Linda Beauclair
,
Nathalie Moiré
et al.
Article dans une revue
hal-01413731
v1
|
|
DensityMap: a genome viewer for illustrating the densities of features
Sébastien Guizard
,
Benoit Piegu
,
Yves Bigot
Article dans une revue
hal-01353242
v1
|
|
The future of transposable element annotation and their classification in the light of functional genomics - what we can learn from the fables of Jean de la Fontaine?
Peter Arensburger
,
Benoit Piegu
,
Yves Bigot
Article dans une revue
hal-02385838
v1
|
|
A survey of transposable element classification systems – a call for a fundamental update to meet the challenge of their diversity and complexity
Benoit Piegu
,
Solenne Bire
,
Peter Arensburger
,
Yves Bigot
Article dans une revue
(article de synthèse)
hal-01154738
v1
|
|
Evolutionary relationships of iridoviruses and divergence of ascoviruses from invertebrate iridoviruses in the superfamily Megavirales
Benoit Piegu
,
Sassan Asgari
,
Dennis Bideshi
,
Brian A. Federici
,
Yves Bigot
Article dans une revue
hal-01130534
v1
|
|
Complete genome sequence of invertebrate iridovirus IIV-25 isolated from a blackfly larva
Benoit Piegu
,
Sébastien Guizard
,
Tatsinda Spears
,
Corinne Cruaud
,
Arnaud Couloux
et al.
Article dans une revue
hal-01129815
v1
|
|
Complete genome sequence of invertebrate iridovirus IIV30 isolated from the corn earworm, Helicoverpa zea
Benoit Piegu
,
Sébastien Guizard
,
Tatsinda Spears
,
Corinne Cruaud
,
Arnaud Couloux
et al.
Article dans une revue
hal-01129797
v1
|
|
An improved genome of the model marine alga [i]Ostreococcus tauri[/i] unfolds by assessing Illumina [i]de novo[/i] assemblies
Romain Blanc Mathieu
,
Bram Verhelst
,
Evelyne Derelle
,
Stephane Rombauts
,
Francois-Yves Bouget
et al.
Article dans une revue
hal-01130514
v1
|
|
Complete genome sequence of invertebrate iridovirus IIV22A, a variant of IIV22, isolated originally from a blackfly larva
Benoit Piegu
,
Sébastien Guizard
,
Tan Yeping
,
Corinne Cruaud
,
Arnaud Couloux
et al.
Article dans une revue
hal-01129866
v1
|
|
Genome sequence of a crustacean iridovirus, IIV31, isolated from the pill bug, [i]Armadillidium vulgare[/i]
Benoit Piegu
,
Sébastien Guizard
,
Tan Yeping
,
Corinne Cruaud
,
Sassan Asgari
et al.
Article dans une revue
hal-01129876
v1
|
|
FCGR2C genotyping by pyrosequencing reveals linkage disequilibrium with FCGR3A V158F and FCGR2A H131R polymorphisms in a Caucasian population
Julien Lejeune
,
Benoit Piegu
,
Valérie Gouilleux-Gruart
,
Marc Ohresser
,
Herve Watier
et al.
Article dans une revue
hal-02425422
v1
|
|
Characteristics of inteins in invertebrate iridoviruses and factors controlling insertion in their viral hosts
Yves Bigot
,
Benoit Piegu
,
Sophie Casteret
,
Frédérick F. Gavory
,
Dennis K. Bideshi
et al.
Article dans une revue
istex
hal-01129728
v1
|
|
Transposase concentration controls transposition activity: Myth or reality?
Solenne Bire
,
Sophie Casteret
,
Ahmed Arnaoty
,
Benoit Piegu
,
Thierry Lecomte
et al.
Article dans une revue
(article de synthèse)
istex
hal-01129760
v1
|
|
Complete genome sequence of invertebrate iridescent virus 22 isolated from a blackfly larva
Benoit Piegu
,
Sébastien Guizard
,
Tatsinda Spears
,
Corinne Cruaud
,
Arnaud Couloux
et al.
Article dans une revue
hal-01129740
v1
|
|
FCGR2C genotyping by pyrosequencing reveals linkage disequilibrium with FCGR3A V158F and FCGR2A H131R polymorphisms in a Caucasian population
Julien Lejeune
,
Benoit Piegu
,
Valérie Gouilleux-Gruart
,
Marc Ohresser
,
Hervé Watier
et al.
Article dans une revue
hal-01129675
v1
|
|
Transpositional landscape of the rice genome revealed by paired-end mapping of high-throughput re-sequencing data
Francois Sabot
,
Nathalie Picault
,
Moaine El-Baidouri
,
Christel Llauro
,
Cristian Chaparro
et al.
Article dans une revue
hal-02114338
v1
|
|
Paleogenomic analysis of the short arm of chromosome 3 reveals the history of the African and Asian progenitors of cultivated rices.
Anne Roulin
,
Cristian Chaparro
,
Benoit Piegu
,
Scott Jackson
,
Olivier Panaud
Article dans une revue
hal-00787403
v1
|
|
ATR3 encodes a diflavin reductase essential for Arabidopsis embryo development
J. Varadarajan
,
J. Guilleminot
,
C. Saint-Jore-Dupas
,
Benoit Piegu
,
M.E. Chabouté
et al.
New Phytologist, 2010, 187, pp.67-82
Article dans une revue
hal-00508597
v1
|
|
Whole genome surveys of rice, maize and sorghum reveal multiple horizontal transfers of the LTR-retrotransposon Route66 in Poaceae.
Anne Roulin
,
Benoit Piegu
,
Philippe M Fortune
,
François Sabot
,
Angélique d'Hont
et al.
Article dans une revue
hal-00693471
v1
|
|
Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
Alexandra Z Worden
,
Jae-Hyeok Lee
,
Thomas Mock
,
Pierre Rouzé
,
Melinda P Simmons
et al.
Article dans une revue
hal-00693449
v1
|
|
Identification of an active LTR retrotransposon in rice.
Nathalie Picault
,
Cristian Chaparro
,
Cristel Llauro
,
Benoit Piegu
,
Willfried Stenger
et al.
Article dans une revue
hal-00685656
v1
|
|
Identification of precursor transcripts for 6 novel miRNAs expands the diversity on the genomic organisation and expression of miRNA genes in rice.
Séverine Lacombe
,
Hiroshi Nagasaki
,
Carole Santi
,
David Duval
,
Benoit Piegu
et al.
Article dans une revue
hal-00366386
v1
|
|
The Rice Annotation Project Database (RAP-DB): 2008 update.
Tsuyoshi Tanaka
,
Baltazar A Antonio
,
Shoshi Kikuchi
,
Takashi Matsumoto
,
Yoshiaki Nagamura
et al.
Article dans une revue
hal-00300215
v1
|
|
Identification and characterization of shared duplications between rice and wheat provide new insight into grass genome evolution
Jerome J. Salse
,
Stéphanie S. Bolot
,
Michael M. Throude
,
Vincent V. Jouffe
,
Benoit Piegu
et al.
Article dans une revue
hal-00964148
v1
|
|
Evidence of multiple horizontal transfers of the long terminal repeat retrotransposon RIRE1 within the genus Oryza
Anne Roulin
,
Benoit Piegu
,
Rod Wing
,
Olivier Panaud
Article dans une revue
hal-02114361
v1
|
|
Evolutionary dynamics of an ancient retrotransposon family provides insights into evolution of genome size in the genus Oryza
Jetty Ammiraju
,
Andrea Zuccolo
,
Yeisoo Yu
,
Xiang Song
,
Benoit Piegu
et al.
Article dans une revue
hal-02114387
v1
|
|
RetrOryza: a database of the rice LTR-retrotransposons.
Cristian Chaparro
,
Romain Guyot
,
Andrea Zuccolo
,
Benoit Piegu
,
Olivier Panaud
Article dans une revue
hal-00164403
v1
|
|
Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features.
Evelyne Derelle
,
Conchita Ferraz
,
Stephane Rombauts
,
Pierre Rouzé
,
Alexandra Z Worden
et al.
Proceedings of the National Academy of Sciences of the United States of America, 2006, 103 (31), pp.11647-52. ⟨10.1073/pnas.0604795103⟩
Article dans une revue
hal-00164247
v1
|
|
Doubling genome size without polyploidization: dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice.
Benoit Piegu
,
Romain Guyot
,
Nathalie Picault
,
Anne Roulin
,
Abhijit Saniyal
et al.
Article dans une revue
hal-00164404
v1
|
|
Gene expression profile in response to Xanthomonas axonopodis pv. manihotis infection in cassava using a cDNA microarray.
Camilo Lopez
,
Mauricio Soto
,
Silvia Restrepo
,
Benoit Piegu
,
Richard Cooke
et al.
Article dans une revue
istex
hal-00168788
v1
|
|
Using cDNA and genomic sequences as tools to develop SNP strategies in cassava (Manihot esculenta Crantz).
C. Lopez
,
Benoit Piegu
,
R. Cooke
,
M. Delseny
,
J. Tohme
et al.
Article dans une revue
istex
hal-00168789
v1
|
|
A unigene catalogue of 5700 expressed genes in cassava.
Camilo Lopez
,
Véronique Jorge
,
Benoit Piegu
,
Chickelu Mba
,
Diego Cortes
et al.
Article dans une revue
istex
hal-00168792
v1
|
|
An EST resource for cassava and other species of Euphorbiaceae.
James V Anderson
,
Michel Delseny
,
Martin A Fregene
,
Veronique Jorge
,
Chikelu Mba
et al.
Article dans une revue
istex
hal-00169060
v1
|
|
New in silico insight into the synteny between rice (Oryza sativa L.) and maize (Zea mays L.) highlights reshuffling and identifies new duplications in the rice genome.
Jérôme Salse
,
Benoit Piegu
,
Richard Cooke
,
Michel Delseny
Article dans une revue
hal-00168790
v1
|
|
Synteny between Arabidopsis thaliana and rice at the genome level: a tool to identify conservation in the ongoing rice genome sequencing project
Jerome J. Salse
,
Benoit Piegu
,
Richard Cooke
,
Michel Delseny
Article dans une revue
hal-02683130
v1
|