Benoit Valot Ingénieur de Recherche en Bioinformatique

Identifiants chercheurs

IdHAL :

benoit-valot

ORCID :

0000-0002-3931-0263

IdRef :

090324994

Présentation

Après un doctorat en protéomique, j’ai travaillé pendant 8 ans à la plateforme de spectrométrie de masse PAPPSO, situé en région parisienne. Suite à une mobilité interne, j’ai rejoins le laboratoire Chrono-Environnement en 2013 où je m’intéresse aux traitements des données de séquençage haut-débit appliqué à la microbiologie.

Publications

Article dans une revue (123)

Foodborne antibiotics enrich human gut microbiota with pathogens producing extended-spectrum β-lactamases and carbapenemases Daniel Martak,Thibault Bourdin,Benoit Valot,Audrey Laboissière,Frédéric Lirussiet al. The International Society of Microbiologial Ecology Journal, 2026, 20 (1), pp.wrag008. ⟨10.1093/ismejo/wrag008⟩ Article dans une revue hal-05564146v1
Adaptation to cinnamaldehyde shapes &lt;i&gt;Pseudomonas aeruginosa&lt;/i&gt; resistance to major antibiotics Eline Dubois,Susie Gaillot,Benoît Valot,Maxime Bour,Jean-Michel Brunelet al. Journal of Bacteriology, In press, 26:e0018025, ⟨10.1128/jb.00180-25⟩ Article dans une revue hal-05289060v1
High-risk clones of Pseudomonas aeruginosa contaminate the drinking water networks of French cities Ani Horikian,Audrey Jeanvoine,Abdallah Amarache,Morgane Tourtet,Jérôme Oryet al. npj Clean Water, 2024, 7 (1), pp.35. ⟨10.1038/s41545-024-00323-8⟩ Article dans une revue hal-04612386v1
Challenging the phylogenetic relationships among Echinococcus multilocularis isolates from main endemic areas Séverine Lallemand,Jorge Oyhenart,Benoit Valot,Romain Borne,Louis Bohardet al. International Journal for Parasitology, 2024, 54 (11), pp.569-582. ⟨10.1016/j.ijpara.2024.05.004⟩ Article dans une revue anses-04862405v1
From modern-day parasitology to paleoparasitology: the elusive past record and evolution of Cryptosporidium Kévin Roche,Frédéric Dalle,Nicolas Capelli,Romain Borne,Isabelle Jouffroy-Bapicotet al. Frontiers in Microbiology, 2023, 14, ⟨10.3389/fmicb.2023.1249884⟩ Article dans une revue hal-04440435v1
Development of a cockroach (Blattella germanica) qPCR for the objective measurement of exposure at home Steffi Rocchi,Benoit Valot,Audrey Laboissière,Audrey Guitton,Emeline Schereret al. Science of the Total Environment, 2023, 864, pp.160965. ⟨10.1016/j.scitotenv.2022.160965⟩ Article dans une revue hal-04212326v1
Genome Analysis of Methicillin-Resistant and Methicillin-Susceptible Staphylococcus aureus ST398 Strains Isolated from Patients with Invasive Infection Abdeljallil Zeggay,Alban Atchon,Benoit Valot,Didier Hocquet,Xavier Bertrandet al. Microorganisms, 2023, 11 (6), pp.1446. ⟨10.3390/microorganisms11061446⟩ Article dans une revue hal-04157672v1
Genome-based typing reveals rare events of patient contamination with Pseudomonas aeruginosa from other patients and sink traps in a medical intensive care unit C. Couchoud,X. Bertrand,M. Bourgeon,G. Piton,B. Valotet al. Journal of Hospital Infection, 2023, 134, pp.63-70. ⟨10.1016/j.jhin.2023.01.010⟩ Article dans une revue hal-04157658v1
Multiple host colonization and differential expansion of multidrug-resistant ST25-Acinetobacter baumannii clades Agnese Lupo,Benoît Valot,Estelle Saras,Antoine Drapeau,Marine Robertet al. Scientific Reports, 2023, 13 (1), pp.21854. ⟨10.1038/s41598-023-49268-x⟩ Article dans une revue anses-04375645v1
Increased gut permeability and intestinal inflammation precede arthritis onset in the adjuvant-induced model of arthritis Sophie Hecquet,Perle Totoson,Hélène Martin,Marie-Paule Algros,Philippe Saaset al. Arthritis Research & Therapy, 2023, 25 (1), pp.95. ⟨10.1186/s13075-023-03069-9⟩ Article dans une revue hal-04235487v1
Longitudinal follow‐up of HPV16 sequence after cervical infection: Low intrahost variation and no correlation with clinical evolution Alice Debernardi,Benoit Valot,Julien Almarcha,David Guenat,Didier Hocquetet al. Journal of Medical Virology, 2022, 94 (11), pp.5512-5518. ⟨10.1002/jmv.27978⟩ Article dans une revue hal-04602308v1
High prevalence of Pseudomonas aeruginosa carriage in residents of French and German long-term care facilities Daniel Martak,Houssein Gbaguidi-Haore,Alexandre Meunier,Benoit Valot,Nadine Conzelmannet al. Clinical Microbiology and Infection, 2022, 28 (10), pp.1353-1358. ⟨10.1016/j.cmi.2022.05.004⟩ Article dans une revue hal-03932547v1
One Health compartmental analysis of ESBL-producing Escherichia coli on Reunion Island reveals partitioning between humans and livestock Guillaume Miltgen,Daniel Martak,Benoit Valot,Laure Kamus,Thomas Garrigoset al. Journal of Antimicrobial Chemotherapy, 2022, 77 (5), pp.1254-1262. ⟨10.1093/jac/dkac054⟩ Article dans une revue hal-03830253v1
Are Methionine Sulfoxide-Containing Proteins Related to Seed Longevity? A Case Study of Arabidopsis thaliana Dry Mature Seeds Using Cyanogen Bromide Attack and Two-Dimensional-Diagonal Electrophoresis Ewa Marzena Kalemba,Benoît Valot,Dominique Job,Christophe Bailly,Patrice Meimoun Plants, 2022, 11 (4), pp.569. ⟨10.3390/plants11040569⟩ Article dans une revue hal-03615936v1
Exposure of Pseudomonas aeruginosa to Cinnamaldehyde Selects Multidrug Resistant Mutants Alexandre Tetard,Susie Gaillot,Eline Dubois,Soumaya Aarras,Benoît Valotet al. Antibiotics, 2022, 11 (12), pp.1790. ⟨10.3390/antibiotics11121790⟩ Article dans une revue hal-04225105v1
Multi-Omics Approaches Unravel Specific Features of Embryo and Endosperm in Rice Seed Germination Naoto Sano,Imen Lounifi,Gwendal Cueff,Boris Collet,Gilles Clémentet al. Frontiers in Plant Science, 2022, 13, pp.867263. ⟨10.3389/fpls.2022.867263⟩ Article dans une revue hal-03733327v1
Populations of extended-spectrum β-lactamase-producing Escherichia coli and Klebsiella pneumoniae are different in human-polluted environment and food items: a multicentre European study Daniel Martak,Julia Guther,Tess Verschuuren,Benoit Valot,Nadine Conzelmannet al. Clinical Microbiology and Infection, 2022, 28 (3), pp.447.e7-447.e14. ⟨10.1016/j.cmi.2021.07.022⟩ Article dans une revue hal-03360863v1
Populations of extended-spectrum β-lactamase-producing Escherichia coli and Klebsiella pneumoniae are different in human-polluted environment and food items: a multicentre European study Daniel Martak,Julia Guther,Tess Verschuuren,Benoit Valot,Nadine Conzelmannet al. Clinical Microbiology and Infection, 2022, 28 (3), pp.447.e7-447.e14. ⟨10.1016/j.cmi.2021.07.022⟩ Article dans une revue hal-03932913v1
Molecular Epidemiology of Azole-Resistant Aspergillus fumigatus in France Shows Patient and Healthcare Links to Environmentally Occurring Genotypes Steffi Rocchi,Thomas Sewell,Benoit Valot,Chloé Godeau,Audrey Laboissiereet al. Frontiers in Cellular and Infection Microbiology, 2021, 11, pp.729476. ⟨10.3389/fcimb.2021.729476⟩ Article dans une revue hal-03529832v1
Partial overlap of fungal communities associated with nettle and poplar roots when co-occurring at a trace metal contaminated site Loïc Yung,Coralie Bertheau,Flavien Tafforeau,Cyril Zappelini,Benoit Valotet al. Science of the Total Environment, 2021, 782, ⟨10.1016/j.scitotenv.2021.146692⟩ Article dans une revue hal-03192784v1
Cell wall proteomic datasets of stems and leaves of Brachypodium distachyon Thibaut Douché,Benoît Valot,Thierry Balliau,Hélène San Clemente,Michel Zivyet al. Data in Brief, 2021, 35, pp.1-4. ⟨10.1016/j.dib.2021.106818⟩ Article dans une revue (data paper) hal-03259235v1
The rise and the fall of a Pseudomonas aeruginosa endemic lineage in a hospital Marie Petitjean,Paulo Juarez,Alexandre Meunier,Etienne Daguindau,Hélène Pujaet al. Microbial Genomics, 2021, 7 (9), ⟨10.1099/mgen.0.000629⟩ Article dans une revue hal-03356587v1
Cholesterol-Rich Microdomains Contribute to PAR1 Signaling in Platelets Despite a Weak Localization of the Receptor in These Microdomains Vahideh Rabani,Jennifer Lagoutte-Renosi,Jennifer Series,Benoit Valot,Jean-Marie Xuerebet al. International Journal of Molecular Sciences, 2020, 21 (21), pp.8065. ⟨10.3390/ijms21218065⟩ Article dans une revue hal-04814698v1
Comparison of pulsed-field gel electrophoresis and whole-genome-sequencing-based typing confirms the accuracy of pulsed-field gel electrophoresis for the investigation of local Pseudomonas aeruginosa outbreaks D. Martak,A. Meunier,M. Sauget,P. Cholley,M. Thouverezet al. Journal of Hospital Infection, 2020, 105 (4), pp.643-647. ⟨10.1016/j.jhin.2020.06.013⟩ Article dans une revue hal-03044091v1
Genome analysis of enterobacteriaceae with non-wild type susceptibility to third-generation cephalosporins recovered from diseased dogs and cats in Europe Line Pepin-Puget,Farid El Garch,Xavier Bertrand,Benoit Valot,Didier Hocquet Veterinary Microbiology, 2020, 242, pp.108601. ⟨10.1016/j.vetmic.2020.108601⟩ Article dans une revue hal-02537485v1
Antimicrobial susceptibility of nine udder pathogens recovered from bovine clinical mastitis milk in Europe 2015–2016: VetPath results Farid El Garch,Myriam Youala,Shabbir Simjee,Hilde Moyaert,Rebecca Kleeet al. Veterinary Microbiology, 2020, 245, pp.108644. ⟨10.1016/j.vetmic.2020.108644⟩ Article dans une revue hal-03054008v1
High genetic diversity among methicillin-susceptible Staphylococcus pseudintermedius in dogs in Europe Marisa Haenni,Farid El Garch,Christine Miossec,Jean-Yves Madec,Didier Hocquetet al. Journal of Global Antimicrobial Resistance, 2020, 21, pp.57-59. ⟨10.1016/j.jgar.2020.02.016⟩ Article dans une revue hal-02541555v1
Combined Bacteriophage and Antibiotic Treatment Prevents Pseudomonas aeruginosa Infection of Wild Type and cftr- Epithelial Cells Alexandre Luscher,Juliette Simonin,Léna Falconnet,Benoit B. Valot,Didier Hocquetet al. Frontiers in Microbiology, 2020, 11, pp.1947. ⟨10.3389/fmicb.2020.01947⟩ Article dans une revue hal-03054559v1
Deciphering the role of insertion sequences in the evolution of bacterial epidemic pathogens with panISa software Charlotte Couchoud,Xavier Bertrand,Benoît Valot,Didier Hocquet Microbial Genomics, 2020, 6 (6), pp.e000356. ⟨10.1099/mgen.0.000356⟩ Article dans une revue hal-02539297v1
Indoor Microbiome: Quantification of Exposure and Association with Geographical Location, Meteorological Factors, and Land Use in France Steffi Rocchi,Gabriel Reboux,Emeline Scherer,Audrey Laboissière,Cécile Zaroset al. Microorganisms, 2020, 8 (3), pp.341. ⟨10.3390/microorganisms8030341⟩ Article dans une revue hal-02543250v1
High Prevalence of Human-Associated Escherichia coli in Wetlands Located in Eastern France Daniel Martak,Charles Henriot,Marion Broussier,Charlotte Couchoud,Benoit Valotet al. Frontiers in Microbiology, 2020, 11, pp.552566. ⟨10.3389/fmicb.2020.552566⟩ Article dans une revue hal-03040847v1
Genotypic study of Citrobacter koseri , an emergent platelet contaminant since 2012 in France Audrey Emery,Nadine Marpaux,Christian Naegelen,Benoit Valot,Pascal Morelet al. Transfusion, 2020, 60 (2), pp.245-249. ⟨10.1111/trf.15617⟩ Article dans une revue hal-02541556v1
Combining Standard Molecular Typing and Whole Genome Sequencing to Investigate Pseudomonas aeruginosa Epidemiology in Intensive Care Units Bárbara Magalhães,Benoit Valot,Mohamed Abdelbary,Guy Prod'Hom,Gilbert Greubet al. Frontiers in Public Health, 2020, 8, pp.00003. ⟨10.3389/fpubh.2020.00003⟩ Article dans une revue hal-03531160v1
Production of Norspermidine Contributes to Aminoglycoside Resistance in pmrAB Mutants of Pseudomonas aeruginosa Arnaud Bolard,Monika Schniederjans,Susanne Haüssler,Pauline Triponney,Benoit Valotet al. Antimicrobial Agents and Chemotherapy, 2019, 63 (10), pp.e01044-19. ⟨10.1128/AAC.01044-19⟩ Article dans une revue hal-02438158v1
Identification of Diverse Integron and Plasmid Structures Carrying a Novel Carbapenemase Among Pseudomonas Species Eleni Liapis,Maxime Bour,Pauline Triponney,Thomas Jové,Jean-Ralph Zaharet al. Frontiers in Microbiology, 2019, 10, pp.404. ⟨10.3389/fmicb.2019.00404⟩ Article dans une revue hal-02438246v1
Carbapenem-Susceptible OXA-23-Producing Proteus mirabilis in the French Community Anaïs Potron,Didier Hocquet,Pauline Triponney,Patrick Plesiat,Xavier Bertrandet al. Antimicrobial Agents and Chemotherapy, 2019, 63 (6), ⟨10.1128/AAC.00191-19⟩ Article dans une revue hal-02315697v1
Contamination of a hospital plumbing system by persister cells of a copper-tolerant high-risk clone of Pseudomonas aeruginosa Audrey Jeanvoine,Alexandre Meunier,Hélène Puja,Xavier Bertrand,Benoît Valotet al. Water Research, 2019, 157, pp.579-586. ⟨10.1016/j.watres.2019.04.011⟩ Article dans une revue hal-02315692v1
Combined Proteomic and Metabolomic Profiling of the Arabidopsis thaliana vps29 Mutant Reveals Pleiotropic Functions of the Retromer in Seed Development Thomas Durand,Gwendal Cueff,Béatrice Godin,Benoît Valot,Gilles Clémentet al. International Journal of Molecular Sciences, 2019, 20 (2), pp.362. ⟨10.3390/ijms20020362⟩ Article dans une revue hal-02401707v1
ISAba1-dependent overexpression of eptA in clinical strains of Acinetobacter baumannii resistant to colistin Anaïs Potron,Jean-Baptiste Vuillemenot,Hélène Puja,Pauline Triponney,Maxime Bouret al. Journal of Antimicrobial Chemotherapy, 2019, 74 (9), pp.2544-2550. ⟨10.1093/jac/dkz241⟩ Article dans une revue hal-04226270v1
Storage mite concentrations are underestimated compared to house dust mite concentrations Gabriel Reboux,Benoit B. Valot,Steffi Rocchi,Emeline Scherer,Sandrine Rousselet al. Experimental and Applied Acarology, 2019, 77 (4), pp.511-525. ⟨10.1007/s10493-019-00376-2⟩ Article dans une revue hal-02307828v1
Carbapenem-Susceptible OXA-23-Producing Proteus mirabilis in the French Community Anaïs Potron,Didier Hocquet,Pauline Triponney,Patrick Plésiat,Xavier Bertrandet al. Antimicrobial Agents and Chemotherapy, 2019, 63 (6), ⟨10.1128/AAC.00191-19⟩ Article dans une revue hal-04226443v1
Fourier-Transform InfraRed Spectroscopy Can Quickly Type Gram-Negative Bacilli Responsible for Hospital Outbreaks Daniel Martak,Benoît Valot,Marlène Sauget,Pascal Cholley,Michelle Thouverezet al. Frontiers in Microbiology, 2019, 10, pp.1440. ⟨10.3389/fmicb.2019.01440⟩ Article dans une revue hal-02315678v1
How Do Richness and Composition of Diet Shape Trace Metal Exposure in a Free-Living Generalist Rodent, Apodemus sylvaticus Shinji Ozaki,Clémentine Fritsch,Benoît Valot,Frédéric Mora,Thierry Cornieret al. Environmental Science and Technology, 2019, 53 (10), pp.5977-5986. ⟨10.1021/acs.est.8b07194⟩ Article dans une revue hal-02316627v1
panISa: Ab initio detection of insertion sequences in bacterial genomes from short read sequence data Panisa Treepong,Christophe Guyeux,Alexandre Meunier,Charlotte Couchoud,Didier Hocquetet al. Bioinformatics, 2018, 34 (22), pp.3795-3800. ⟨10.1093/bioinformatics/bty479⟩ Article dans une revue hal-02438015v1
Development of a quantitative PCR detecting Cunninghamella bertholletiae to help in diagnosing this rare and aggressive mucormycosis Anne-Pauline Bellanger,Ana Berceanu,Steffi Rocchi,Benoit Valot,Jean Fontanet al. Bone Marrow Transplantation, 2018, ⟨10.1038/s41409-018-0194-5⟩ Article dans une revue hal-01791907v1
Global emergence of the widespread Pseudomonas aeruginosa ST235 clone D Treepong,D Kos,D Guyeux,D. Blanc,B. Bertrandet al. Clinical Microbiology and Infection, 2018, 24 (3), pp.258 - 266. ⟨10.1016/j.cmi.2017.06.018⟩ Article dans une revue hal-01812638v1
Does pollution influence small mammal diet in the field? A metabarcoding approach in a generalist consumer Shinji Ozaki,Clémentine Fritsch,Benoît Valot,Frédéric Mora,Renaud Scheifleret al. Molecular Ecology, 2018, 27 (18), pp.3700-3713. ⟨10.1111/mec.14823⟩ Article dans une revue hal-02368039v1
Determination of azole fungal residues in soils and detection of Aspergillus fumigatus-resistant strains in market gardens of Eastern France Steffi Rocchi,Manon Ponçot,Nadia Morin-Crini,Audrey Laboissière,Benoît Valotet al. Environmental Science and Pollution Research, 2018, 25 (32), pp.32015-32023. ⟨10.1007/s11356-018-3177-6⟩ Article dans une revue hal-01957023v1
Bacterial diversity associated with poplar trees grown on a Hg-contaminated site: Community characterization and isolation of Hg-resistant plant growth-promoting bacteria Alexis Durand,François Maillard,Vanessa Alvarez-Lopez,Sarah Guinchard,Coralie Bertheauet al. Science of the Total Environment, 2018, 622-623, pp.1165-1177. ⟨10.1016/j.scitotenv.2017.12.069⟩ Article dans une revue hal-01662763v1
Biofilm biodiversity in French and Swiss show caves using the metabarcoding approach: First data Stéphane Pfendler,Battle Karimi,Pierre-Alain Maron,Lisa Ciadamidaro,Benoit Valotet al. Science of the Total Environment, 2018, 615, pp.1207 - 1217. ⟨10.1016/j.scitotenv.2017.10.054⟩ Article dans une revue hal-01618378v1
Circulating cell-free DNA in patients with alveolar echinococcosis Alice Baraquin,Eric Hervouet,Carine Richou,Pierre Flori,Paul Peixotoet al. Molecular and Biochemical Parasitology, 2018, 222, pp.14 - 20. ⟨10.1016/j.molbiopara.2018.04.004⟩ Article dans une revue istex hal-01863922v1
Investigating the genetic diversity of Echinococcus granulosus sensu stricto with new microsatellites Gérald Umhang,Frédéric Grenouillet,Vanessa Bastid,Selim M’rad,Benoit B. Valotet al. Parasitology Research, 2018, 117 (9), pp.2743-2755. ⟨10.1007/s00436-018-5963-y⟩ Article dans une revue hal-02195671v1
An immunoproteomic approach revealed antigenic proteins enhancing serodiagnosis performance of bird fancier's lung Adeline Rouzet,Gabriel Reboux,Jean-Charles Dalphin,Anne Gondouin,Paul de Vuystet al. Journal of Immunological Methods, 2017, 450, pp.58 - 65. ⟨10.1016/j.jim.2017.07.012⟩ Article dans une revue hal-01664277v1
High prevalence and moderate diversity of Pseudomonas aeruginosa in the U-bends of high-risk units in hospital Amélie Varin,Benoît Valot,Pascal Cholley,Camille Morel,Michelle Thouverezet al. International Journal of Hygiene and Environmental Health, 2017, 220 (5), pp.880 - 885. ⟨10.1016/j.ijheh.2017.04.003⟩ Article dans une revue hal-01664766v1
Environmental Metabarcoding Reveals Contrasting Belowground and Aboveground Fungal Communities from Poplar at a Hg Phytomanagement Site Alexis Durand,François Maillard,Julie Foulon,Hyun S. Gweon,Benoit Valotet al. Microbial ecology, 2017, 74, pp.795-809. ⟨10.1007/s00248-017-0984-0⟩ Article dans une revue hal-01518636v1
X!TandemPipeline: a tool to manage sequence redundancy for protein inference and phosphosite identification Olivier Langella,Benoît Valot,Thierry Balliau,Mélisande Blein-Nicolas,Ludovic Bonhommeet al. Journal of Proteome Research, 2017, 16 (2), pp.494-503. ⟨10.1021/acs.jproteome.6b00632⟩ Article dans une revue hal-01484169v1
Can MALDI-TOF Mass Spectrometry Reasonably Type Bacteria? Marlène Sauget,Benoît Valot,Xavier Bertrand,Didier Hocquet Trends in Microbiology, 2017 Article dans une revue hal-01505999v1
DNA metabarcoding to assess indoor fungal communities: Electrostatic dust collectors and Illumina sequencing Steffi Rocchi,Benoît Valot,Gabriel Reboux,Laurence Millon Journal of Microbiological Methods, 2017, 139, pp.107 - 112. ⟨10.1016/j.mimet.2017.05.014⟩ Article dans une revue hal-01664751v1
Genomic characterization of a local epidemic Pseudomonas aeruginosa reveals specific features of the widespread clone ST395 Marie Petitjean,Daniel Martak,Alicia Silvant,Xavier Bertrand,Benoit Valotet al. Microbial Genomics, 2017, 3 (10), ⟨10.1099/mgen.0.000129⟩ Article dans une revue hal-01664243v1
Screening of antigenic vesicular fluid proteins of Echinococcus multilocularis as potential viability biomarkers to monitor drug response in alveolar echinococcosis patients Benoit Valot,Bénédicte Rognon,Anais Prenel,Alice Baraquin,Jenny Knappet al. PROTEOMICS - Clinical Applications, 2017, ⟨10.1002/prca.201700010⟩ Article dans une revue hal-01667558v1
An Integrated “Multi-Omics” Comparison of Embryo and Endosperm Tissue-Specific Features and Their Impact on Rice Seed Quality Marc M. Galland,Dongli He,Imen I. Lounifi,Erwann Arc,Gilles Clémentet al. Frontiers in Plant Science, 2017, 8, pp.1984. ⟨10.3389/fpls.2017.01984⟩ Article dans une revue hal-01645144v1
Association between Pseudomonas aeruginosa positive water samples and healthcare-associated cases: nine-year study at one university hospital Hélène Bouxom,Damien Fournier,Kévin Bouiller,Didier Hocquet,Xavier Bertrandet al. Journal of Hospital Infection, 2017, 96 (3), pp.238 - 243. ⟨10.1016/j.jhin.2016.12.007⟩ Article dans une revue istex hal-01863884v1
Usefulness of à la carte antigens for bird fancier’s lung serodiagnosis: total dropping extract and/or dropping’s microflora antigens Adeline Rouzet,Gabriel Reboux,Jean-Charles Dalphin,Paul de Vuyst,Audrey Laboissièreet al. Journal of Medical Microbiology, 2017, 66 (10), pp.1467 - 1470. ⟨10.1099/jmm.0.000586⟩ Article dans une revue hal-01667609v1
Environmental metabarcoding reveals contrasting microbial communities at two poplar phytomanagement sites Julie Foulon,Cyril Zappelini,Alexis Durand,Benoit Valot,Olivier Girardcloset al. Science of the Total Environment, 2016, 571, pp.1230 - 1240. ⟨10.1016/j.scitotenv.2016.07.151⟩ Article dans une revue istex hal-01512323v1
Pyomelanin-producing Pseudomonas aeruginosa selected during chronic infections have a large chromosomal deletion which confers resistance to pyocins. Didier Hocquet,Marie Petitjean,Laurence Rohmer,Benoît Valot,Hemantha D Kulasekaraet al. Environmental Microbiology, 2016, Ecophysiology of Pseudomonas, 18 (10), pp.3482-3493. ⟨10.1111/1462-2920.13336⟩ Article dans une revue hal-01508741v1
Positive fungal quantitative PCR and Th17 cytokine detection in bronchoalveolar lavage fluids: Complementary biomarkers of hypersensitivity pneumonitis? Anne-Pauline Bellanger,Houssein Gbaguidi-Haore,Anne Gondoin,Jean-Rene Pallandre,Mallory Vacheyrouet al. Journal of Immunological Methods, 2016, 434, pp.61-5 Article dans une revue hal-01368319v1
Impact of poplar-based phytomanagement on soil properties and microbial communities in a metal-contaminated site Julie Foulon,Cyril Zappelini,Alexis Durand,Benoit Valot,Damien Blaudezet al. FEMS Microbiology Ecology, 2016, 92 (10), pp.fiw163. ⟨10.1093/femsec/fiw163⟩ Article dans une revue hal-01512324v1
Common peptide epitopes induce cross-reactivity in hypersensitivity pneumonitis serodiagnosis. Laurence Millon,Benedicte Rognon,Benoit Valot,Coralie Barrera,Anne Pauline Bellangeret al. Journal of Allergy and Clinical Immunology, 2016 Article dans une revue hal-01368314v1
Identification of Antigenic Proteins from Lichtheimia corymbifera for Farmer's Lung Disease Diagnosis. Bénédicte Rognon,Coralie Barrera,Michel Monod,Benoit Valot,Sandrine Rousselet al. PLoS ONE, 2016, 11 (8), pp.e0160888. ⟨10.1371/journal.pone.0160888⟩ Article dans une revue hal-01368315v1
Assessment of pets (cats and dogs) in homes using electrostatic dust collectors and QPCR: new tools to evaluate exposure and risk of allergies. Emeline Scherer,Benoit Valot,Mallory Vacheyrou,Alexandre Naegele,Jenny Knappet al. International Journal of Environmental Health Research, 2016, 26 (5-6), pp.1-11. ⟨10.1080/09603123.2016.1217316⟩ Article dans une revue hal-01368313v1
Quantification of Saprolegnia parasitica in river water using real-time quantitative PCR: from massive fish mortality to tap drinking water. Steffi Rocchi,Maxime Tisserant,Benoit Valot,Audrey Laboissière,Victor Frossardet al. International Journal of Environmental Health Research, 2016, pp.1-10 Article dans une revue hal-01397303v1
Genomic characterization of EmsB microsatellite loci in Echinococcus multilocularis. Benoît Valot,Jenny Knapp,Gérald Umhang,Frédéric Grenouillet,Laurence Millon Infection, Genetics and Evolution, 2015, 32, pp.338-41. ⟨10.1016/j.meegid.2015.03.040⟩ Article dans une revue hal-01166207v1
Diversity and complexity of microbial communities from a chlor-alkali tailings dump Cyril Zappelini,Battle Karimi,Julie Foulon,Laurence Didier Lacercat-Didier,Francois Maillardet al. Soil Biology and Biochemistry, 2015, 90, pp.101-110. ⟨10.1016/j.soilbio.2015.08.008⟩ Article dans une revue istex hal-02372435v1
A systems approach to elucidate heterosis of protein abundances in yeast Melisande Blein-Nicolas,Warren Albertin,Telma da Silva,Benoît Valot,Thierry T. Balliauet al. Molecular and Cellular Proteomics, 2015, 14 (8), pp.2056-2071. ⟨10.1074/mcp.M115.048058⟩ Article dans une revue hal-02636704v1
Caractérisation microbiologique de 3193 logements français des enfants de la cohorte ELFE Gabriel Reboux,Steffi Rocchi,Victor Frossard,Emeline Scherer,Benoit Valotet al. Journal of Medical Mycology = Journal de Mycologie Médicale, 2015, 25 (3), pp.228. ⟨10.1016/j.mycmed.2015.06.027⟩ Article dans une revue hal-01211279v1
Microbiological characterization of 3193 French dwellings of Elfe cohort children S. Rocchi,Gabriel Reboux,V. Frossard,E. Scherer,Benoit Valotet al. Science of the Total Environment, 2015, 505, pp.1026-1035. ⟨10.1016/j.scitotenv.2014.10.086⟩ Article dans une revue istex hal-01117795v1
What it takes to be a Pseudomonas aeruginosa? The core genome of the opportunistic pathogen updated Benoît Valot,Christophe Guyeux,Julien y Rolland,Kamel Mazouzi,Xavier Bertrandet al. PLoS ONE, 2015, 10 (5), pp.e0126468. ⟨10.1371/journal.pone.0126468⟩ Article dans une revue hal-02131118v1
Microbiological consequences of indoor composting. A Naegele,G Reboux,M Vacheyrou,B Valot,L Millonet al. Indoor Air, 2015 Article dans une revue hal-01305451v1
Detection of Temporal Clusters of Healthcare-Associated Infections or Colonizations with Pseudomonas aeruginosa in Two Hospitals: Comparison of SaTScan and WHONET Software Packages Benoit Valot,Christophe Guyeux,Julien Yves Rolland,Kamel Mazouzi,Didier Hocquetet al. PLoS ONE, 2015, 10 (10), pp.e0139920. ⟨10.1371/journal.pone.0139920⟩ Article dans une revue hal-02552467v1
O-Glycosylation of the N-terminal region of the serine-rich adhesin Srr1 of Streptococcus agalactiae explored by mass spectrometry. Thibault Chaze,Alain Guillot,Benoît Valot,Olivier Langella,Julia Chamot-Rookeet al. Molecular and Cellular Proteomics, 2014, 13 (9), pp.2168-82. ⟨10.1074/mcp.M114.038075⟩ Article dans une revue hal-01204448v1
Quantitative variations of the mitochondrial proteome and phosphoproteome during fermentative and respiratory growth in $Saccharomyces\ cerevisiae$ Margaux Renvoisé,Ludovic Bonhomme,Marlène Davanture,Benoît Valot,Michel Zivyet al. Journal of Proteomics, 2014, 106, pp.140-150. ⟨10.1016/j.jprot.2014.04.022⟩ Article dans une revue cea-02462405v1
Comparative Genomic Analysis of Two Multidrug-Resistant Clinical Isolates of ST395 Epidemic Strain of Pseudomonas aeruginosa Obtained 12 Years Apart. Benoit Valot,Laurence Rohmer,Michael A Jacobs,Samuel I Miller,Xavier Bertrandet al. Genome Announcements, 2014, 2 (3), pp.00515-14. ⟨10.1128/genomeA.00515-14⟩ Article dans une revue hal-01061619v1
An integrated “omics” approach to the characterization of maize (Zea mays L.) mutants deficient in the expression of two genes encoding cytosolic glutamine synthetase Nardjis Amiour,Sandrine Imbaud,Gilles Clément,Nicolas Agier,Michel Zivyet al. BMC Genomics, 2014, 15 (1), pp.1005. ⟨10.1186/1471-2164-15-1005⟩ Article dans une revue hal-01096990v1
Bacterial protein signals are associated with Crohn's disease. Catherine Juste,David P Kreil,Christian Beauvallet,Alain Guillot,Sebastian Vacaet al. Gut, 2014, 63 (10), pp.1566-1577. ⟨10.1136/gutjnl-2012-303786⟩ Article dans une revue hal-00933734v1
Phosphoproteome profiles of the phytopathogenic fungi [i]Alternaria brassicicola[/i] and [i]Botrytis cinerea[/i] during exponential growth in axenic cultures Marlène Davanture,Jerome Dumur,Nelly Bataillé,Claire Campion,Benoit Valotet al. Proteomics, 2014, 14 (13-14), pp.1639-1645. ⟨10.1002/pmic.201300541⟩ Article dans une revue (data paper) istex hal-04012727v1
The membrane proteome of &lt;em&gt;Medicago truncatula&lt;/em&gt; roots displays qualitative and quantitative changes in response to arbuscular mycorrhizal symbiosis Cosette C. Abdallah,Benoît Valot,Christelle Guillier,Arnaud Mounier,Thierry Balliauet al. Journal of Proteomics, 2014, 108, pp.354-368. ⟨10.1016/j.jprot.2014.05.028⟩ Article dans une revue hal-02633346v1
Phosphoproteome profiles of the phytopathogenic fungi [i]Alternaria brassicicola[/i] and [i]Botrytis cinerea[/i] during exponential growth in axenic cultures Marlène Davanture,Jerome Dumur,Nelly Bataillé,Claire Campion,Benoit Valotet al. Proteomics, 2014, 14 (13-14), pp.1639-1645. ⟨10.1002/pmic.201300541⟩ Article dans une revue (data paper) istex hal-01209998v1
Linking post-translational modifications and variation of phenotypic traits Warren Albertin,Philippe Marullo,Marina Bely,Michel Aigle,Aurelie Bourgaiset al. Molecular and Cellular Proteomics, 2013, 12 (3), pp.720 - 735. ⟨10.1074/mcp.M112.024349⟩ Article dans une revue hal-01003318v1
&lt;em&gt;Brachypodium distachyon&lt;/em&gt; as a model plant toward improved biofuel crops: search for secreted proteins involved in biogenesis and disassembly of cell wall polymers Thibaut Douche,Hélène San Clemente,Vincent Burlat,David Roujol,Benoit B. Valotet al. Proteomics, 2013, 13 (16), pp.2438-2454. ⟨10.1002/pmic.201200507⟩ Article dans une revue istex hal-02647765v1
Yeast proteome variations reveal different adaptive responses to grape must fermentation Melisande Blein-Nicolas,Warren Albertin,Benoit B. Valot,Philippe Marullo,Delphine Sicardet al. Molecular Biology and Evolution, 2013, 30 (6), pp.1368-1383. ⟨10.1093/molbev/mst050⟩ Article dans une revue hal-02648058v1
An extensive proteome map of tomato (Solanum lycopersicum) fruit pericarp Jiaxin Xu,Laura Pascual-Banuls,Rémy Aurand,Jean-Paul Bouchet,Benoit B. Valotet al. Proteomics, 2013, 13 (20), pp.3059 - 3063. ⟨10.1002/pmic.201200438⟩ Article dans une revue (data paper) istex hal-02653105v1
Effect of salinity and calcium on tomato fruit proteome Arafet Manaa,Mireille Faurobert,Benoit B. Valot,Jean-Paul Bouchet,Dominique Grassellyet al. OMICS, 2013, 17 (6), 15 p. ⟨10.1089/omi.2012.0108⟩ Article dans une revue hal-02648418v1
Crop seed oil bodies: from challenges in protein identification to an emerging picture of the oil body proteome Pascale Jolivet,Francisca Acevedo,Celine Boulard,Sabine d'Andrea,Jean Denis Faureet al. Proteomics, 2013, 13 (12-13), pp.1836-1849. ⟨10.1002/pmic.201200431⟩ Article dans une revue istex hal-01204012v1
Draft Genome Sequence of the Principal Etiological Agent of Farmer's Lung Disease, Saccharopolyspora rectivirgula. Coralie Barrera,Benoît Valot,Bénédicte Rognon,Christophe Zaugg,Michel Monodet al. Genome Announcements, 2013, 2 (6), ⟨10.1128/genomeA.01340-14⟩ Article dans une revue hal-01119476v1
Phosphorylation of p27(KIP1) homologs KRP6 and 7 by SNF1-related protein kinase-1 links plant energy homeostasis and cell proliferation Thomas Guérinier,Laurine Millan,Pierre Crozet,Celine Oury,Francois Reyet al. The Plant Journal, 2013, 75 (3), pp.515 - 525. ⟨10.1111/tpj.12218⟩ Article dans une revue hal-02644290v1
Management and dissemination of MS proteomic data with PROTICdb: Example of a quantitative comparison between methods of protein extraction Olivier Langella,Benoit B. Valot,Daniel Jacob,Thierry T. Balliau,Raphaël-Gauthier Floreset al. Proteomics, 2013, 13 (9), pp.1457-1466. ⟨10.1002/pmic.201200564⟩ Article dans une revue istex hal-02651260v1
Cold Stratification and Exogenous Nitrates Entail Similar Functional Proteome Adjustments during Arabidopsis Seed Dormancy Release Erwann Arc,Kamel Chibani,Philippe Grappin,Marc Jullien,Beatrice Godin-Pérénnezet al. Journal of Proteome Research, 2012, 11 (11), pp.5418 - 5432. ⟨10.1021/pr3006815⟩ Article dans une revue hal-01003345v1
A method for proteomic analysis of equine subchondral bone and epiphyseal cartilage Clémence Desjardin,Thierry Balliau,Benoit Valot,Michel Zivy,Laurence Wimelet al. Proteomics, 2012, 12 (11), pp.1870-1874. ⟨10.1002/pmic.201100366⟩ Article dans une revue istex hal-01019826v1
Phosphoproteome Dynamics Upon Changes in Plant Water Status Reveal Early Events Associated With Rapid Growth Adjustment in Maize Leaves Ludovic Bonhomme,Benoit B. Valot,Francois F. Tardieu,Michel M. Zivy Molecular and Cellular Proteomics, 2012, 11 (10), pp.957-972. ⟨10.1074/mcp.M111.015867⟩ Article dans une revue hal-02651323v1
The use of metabolomics integrated with transcriptomic and proteomic studies for identifying key steps involved in the control of nitrogen metabolism in crops such as maize Nardjis N. Amiour,Sandrine S. Imbaud,Gilles G. Clément,Nicolas N. Agier,Michel M. Zivyet al. Journal of Experimental Botany, 2012, 63 (14), pp.5017-5033. ⟨10.1093/jxb/ers186⟩ Article dans une revue hal-01000350v1
Seed oil bodies from Gevuina avellana and Madia sativa Francisca F. Acevedo,Monica M. Rubilar,Carolina C. Shene,Patricia P. Navarrete,Fernando F. Romeroet al. Journal of Agricultural and Food Chemistry, 2012, 60 (28), pp.6994-7004. ⟨10.1021/jf301390d⟩ Article dans une revue hal-01000351v1
A proteomic approach to decipher chilling response from cold acclimation in pea (Pisum sativum L.) Estelle Dumont,Nasser N. Bahrman,Estelle Goulas,Benoit B. Valot,Hélène Sellier-Richardet al. Plant Science, 2011, 180 (1), pp.86 - 98. ⟨10.1016/j.plantsci.2010.09.006⟩ Article dans une revue istex hal-02649157v1
The ZmASR1 Protein Influences Branched-Chain Amino Acid Biosynthesis and Maintains Kernel Yield in Maize under Water-Limited Conditions Laetitia Virlouvet,Marie-Pierre Jacquemot,Denise Gerentes,Hélène Corti,Sophie Boutonet al. Plant Physiology, 2011, 157 (2), pp.917-936. ⟨10.1104/pp.111.176818⟩ Article dans une revue hal-03818423v1
Dynamics of post-translational modifications and protein stability in the stroma of Chlamydomonas reinhardtii chloroplasts. Willy V Bienvenut,Christelle Espagne,Aude Martinez,Wojetec Majeran,Benoît Valotet al. Proteomics, 2011, 11 (9), pp.1734-50. ⟨10.1002/pmic.201000634⟩ Article dans une revue istex hal-00851379v1
MassChroQ: A versatile tool for mass spectrometry quantification Benoit Valot,Olivier Langella,Edlira Nano,Michel Zivy Proteomics, 2011, 11 (17), pp.3572 - 3577. ⟨10.1002/pmic.201100120⟩ Article dans une revue hal-01481216v1
Oil body proteins sequentially accumulate throughout seed development in Brassica napus Pascale Jolivet,Céline Boulard,Annick Bellamy,Benoît Valot,Sabine D’andreaet al. Journal of Plant Physiology, 2011, 168 (17), pp.2015-2020. ⟨10.1016/j.jplph.2011.06.007⟩ Article dans une revue istex hal-03659042v1
The ZmASR1 protein influences branched-chain amino acid biosynthesis and maintains kernel yield in maize under water-limited conditions Laëtitia Virlouvet,Marie Pierre Jacquemot,Denise Gerentes,Helene Corti,Sophie Boutonet al. Plant Physiology, 2011, 157 (2), pp.917-936. ⟨10.1104/pp.111.176818⟩ Article dans une revue hal-02647863v1
Combining various strategies to increase the coverage of the plant cell wall glycoproteome. Yu Zhang,Aurélie Giboulot,Michel Zivy,Benoît Valot,Elisabeth Jametet al. Phytochemistry, 2011, 72 (10), pp.1109-23. ⟨10.1016/j.phytochem.2010.10.019⟩ Article dans une revue hal-00610579v1
Salt and genotype impact on plant physiology and root proteome variations in tomato Arafet Manaa,- Hela Ben Ahmed,Benoit B. Valot,Jean-Paul Bouchet,Samira Aschi-Smitiet al. Journal of Experimental Botany, 2011, 62 (8), pp.2797-2813. ⟨10.1093/jxb/erq460⟩ Article dans une revue hal-02646770v1
Analysis of the xylem sap proteome of Brassica oleracea reveals a high content in secreted proteins. Laetitia Ligat,Emmanuelle Lauber,Cécile Albenne,Hélène San Clemente,Benoît Valotet al. Proteomics, 2011, 11 (9), pp.1798-813. ⟨10.1002/pmic.201000781⟩ Article dans une revue hal-00610601v1
The Arabidopsis ABA-Activated Kinase OST1 Phosphorylates the bZIP Transcription Factor ABF3 and Creates a 14-3-3 Binding Site Involved in Its Turnover Caroline Sirichandra,Marlène M. Davanture,Benjamin E. Turk,Michel M. Zivy,Benoit B. Valotet al. PLoS ONE, 2010, 5 (11), ⟨10.1371/journal.pone.0013935⟩ Article dans une revue hal-02668895v1
Identification of in planta-expressed arbuscular mycorrhizal fungal proteins upon comparison of the root proteomes of Medicago truncatula colonised with two Glomus species Ghislaine G. Recorbet,Benoit B. Valot,Franck F. Robert,Vivienne V. Gianinazzi-Pearson,Eliane E. Dumas-Gaudot Fungal Genetics and Biology, 2010, 47 (7), pp.608-618. ⟨10.1016/j.fgb.2010.03.003⟩ Article dans une revue istex hal-02664836v1
Proteomic analysis of Medicago truncatula root plastids Zeina Daher,Ghislaine G. Recorbet,Benoit B. Valot,Franck F. Robert,Thierry T. Balliau Proteomics, 2010, 10 (11), pp.2123-2137. ⟨10.1002/pmic.200900345⟩ Article dans une revue istex hal-02657703v1
Protective proteins are differentially expressed in tomato genotypes differing for their tolerance to low-temperature storage David Page,Barbara Gouble,Benoit B. Valot,Jean-Paul Bouchet,Caroline Callotet al. Planta, 2010, 232 (2), pp.483-500. ⟨10.1007/s00425-010-1184-z⟩ Article dans une revue istex hal-02662653v1
On the mechanisms of cadmium stress alleviation in Medicago truncatula by arbuscular mycorrhizal symbiosis: A root proteomic study Achref A. Aloui,Ghislaine G. Recorbet,Armelle Gollotte,Franck F. Robert,Benoit B. Valotet al. Proteomics, 2009, 9 (2), pp.420-433. ⟨10.1002/pmic.200800336⟩ Article dans une revue hal-02665088v1
Cotranslational proteolysis dominates glutathione homeostasis to support proper growth and development. Frédéric Frottin,Christelle Espagne,José A Traverso,Caroline Mauve,Benoît Valotet al. The Plant cell, 2009, 21 (10), pp.3296-314. ⟨10.1105/tpc.109.069757⟩ Article dans une revue hal-00853794v1
Extent of N-terminal modifications in cytosolic proteins from eukaryotes. Aude Martinez,José A Traverso,Benoît Valot,Myriam Ferro,Christelle Espagneet al. Proteomics, 2008, 8 (14), pp.2809-31. ⟨10.1002/pmic.200701191⟩ Article dans une revue istex hal-00853807v1
Alternative and effective proteomic analysis in Arabidopsis. Christelle Espagne,Aude Martinez,Benoît Valot,Thierry Meinnel,Carmela Giglione Proteomics, 2007, 7 (20), pp.3788-99. ⟨10.1002/pmic.200700346⟩ Article dans une revue istex hal-00187943v1
Two cytosolic glutamine synthetase isoforms of maize are specifically involved in the control of grain production. Antoine Martin,Judy Lee,Thomas Kichey,Denise Gerentes,Michel Zivyet al. The Plant cell, 2006, 18 (11), pp.3252-74. ⟨10.1105/tpc.106.042689⟩ Article dans une revue hal-01927336v1
Identification of Membrane-Associated Proteins Regulated by the Arbuscular Mycorrhizal Symbiosis Benoît Valot,Marc Dieu,Ghislaine Recorbet,Martine Raes,Silvio Gianinazziet al. Plant Molecular Biology, 2005, 59 (4), pp.565-580. ⟨10.1007/s11103-005-8269-2⟩ Article dans une revue istex hal-03744681v1
A technical trick for studying proteomics in parallel to transcriptomics in symbiotic root-fungus interactions Eliane Dumas-Gaudot,Nardjis Amiour,Stephanie Weidmann,G. Bestel-Corre,Benoît Valotet al. Proteomics, 2004, 4, pp.451-453 Article dans une revue hal-02675283v1
Proteomics as a way to identify extra-radicular fungal proteins from Glomus intraradices - RiT-DNA carrot root mycorrhizas Eliane Dumas-Gaudot,Benoît Valot,G. Bestel-Corre,Ghislaine Recorbet,M. St-Arnaudet al. FEMS Microbiology Ecology, 2004, 48, pp.401-411 Article dans une revue hal-02671977v1
Sub-cellular proteomic analysis of a Medicago truncatula root microsomal fraction Benoît Valot,Silvio Gianinazzi,Eliane Dumas-Gaudot Phytochemistry, 2004, 65, pp.1721-1732 Article dans une revue hal-02671433v1

Chapitre d'ouvrage (3)

Functional Genomic of Arbuscular Mycorrhizal Symbiosis: Why and How Using Proteomics Eliane Dumas-Gaudot,Ghislaine Recorbet,Franck Robert,Benoit Valot,Nardjis Amiour Symbiotic Fungi, 18, Springer Berlin Heidelberg, pp.243-274, 2009, Soil Biology, ⟨10.1007/978-3-540-95894-9_15⟩ Chapitre d'ouvrage hal-03745563v1
Plasma membrane in arbuscular mycorrhiza Ghislaine G. Recorbet,Benoit Valot,Eliane Dumas Gaudot Benoît Schoefs. Plant Cell Compartments - Selected Topics, Research Signpost, 2008, ISBN 978-81-308-0104-9 Chapitre d'ouvrage hal-03745603v1
Proteomics of different tissues Satish Nagaraj,Zhentian Lei,Bonnie Watson,Lloyd Sumner,Karine Gallardoet al. Medicago truncatula handbook, The Samuel Roberts Noble Foundation, 2006, 0-9754303-1-9 Chapitre d'ouvrage hal-02820000v1

Communication dans un congrès (33)

Le microbiote intestinal des patients atteints de cirrhose sévère est modifié par la rifaximine et est associé à des modifications de la sévérité de la maladie : résultats de l’étude multicentrique ProPILA-Rifax Ruben Ladeira,Adrien Biguenet,Alexandre Meunier,Marion Gonthier,Anais Pittaet al. Journées Francophones d'Hépato-gastroentérologie et d'Oncologie Digestive, Mar 2026, Paris, France Communication dans un congrès hal-05563765v1
Volatile sulfur compounds oral release from aroma precursors and the emerging role of bacterial C-S lyases Jade Moreno,Mélanie Lelièvre,Nicolas Poirier,Mireille Folia,Ruben Ladeiraet al. FLAVOURsome Satellite Event at Food Oral Processing Conference, May 2025, Valencia, Spain Communication dans un congrès hal-05459451v1
Impact des huiles essentielles sur la résistance aux antibiotiques – l’exemple du cinnamaldéhyde Alexandre Tetard,Susie Gaillot,Benoît Valot,Patrick Plésiat,Catherine Llanes Réunion annuelle du GRD CNRS Pseudomonas, Sep 2019, Voiron, France Communication dans un congrès hal-03527391v1
Reconstruction de la végétation actuelle et passée d’un méandre du Doubs à l’aide de marqueurs carpologiques, palynologiques et génétiques Caroline Schaal,Jehanne Oudot-Canaff,Quentin Cuenot,Carole Bégeot,Benoit Valotet al. 13èmes rencontres d'archeobotanique, Feb 2018, Station biologique de Besse (Auvergne), France Communication dans un congrès hal-02372696v1
Biomass, mineralomass and microbial communities at poplar phytomanagement sites: a ten-year study Michel Chalot,Olivier Girardclos,Loïc Yung,Cyril Zappelini,Benoit B. Valotet al. 14th International Conference on the Biogeochemistry of Trace Elements (ICOBTE), Jul 2017, Zurich, Switzerland Communication dans un congrès hal-03189722v1
Large-scale demonstration of increased production of poplar biomass by mycorrhizal inoculation at metal-contaminated phytomanagement sites, and investigation of associated fungal communities Damien Blaudez,Lisa Ciadamidaro,Julie Foulon,Cyril Zappelini,Alexis Durandet al. 9th International Conference on Mycorrhiza, Jul 2017, Prague, Czech Republic Communication dans un congrès hal-03189719v1
Environmental metabarcoding as a relevant tool to reveal structure and composition of microbial communities at phytomanagement sites Michel Chalot,Julie Foulon,Cyril Zappelini,Alexis Durand,Benoit B. Valotet al. 14th International Conference on Sustainable Use and Management of Soil, Sediment and Water Resources (AQUACONSOIL), Jun 2017, Lyon, France Communication dans un congrès hal-03189726v1
Environmental metabarcoding as a tool to reveal structure and composition of microbial communities in anthropogenic soils Julie Foulon,Cyril Zappelini,Alexis Durand,Benoit Valot,Mathieu Lugliaet al. 4ème colloque de Génomique Environnementale, Sep 2017, Marseille, France Communication dans un congrès hal-01766402v1
Microbial communities from poplar at a Hg phytomanagement site A. Durand,François Maillard,Benoit Valot,Hyun S. Gweon,Michel Chalot 14th International Conference on the Biogeochemistry of Trace Elements (ICOBTE), Jul 2017, Zurich, Switzerland Communication dans un congrès hal-03528780v1
Natural recolonization of tailings dumps by trees and microbes: a case study Cyril Zappelini,Mohamad Assad,Nicolas Capelli,Fabienne Tatin-Froux,Julien Parelleet al. 14th International Conference on the Biogeochemistry of Trace Elements (ICOBTE), Jul 2017, Zurich, Switzerland Communication dans un congrès hal-03189725v1
New approaches to description and modeling of trophic interactions: reliable allies to study trophically-transmitted parasites? Francis Raoul,Antoine Perasso,Virgile Baudrot,Benoit Valot,Eve Afonsoet al. Research and methods in ecohealth and conservation, GDRI Ecosystem Health and Environmental Disease Ecology, Nov 2016, Kunming, China Communication dans un congrès hal-01367367v1
Methods in genetics to investigate E. multilocularis transmission patterns Jenny Knapp,Umhang Gérald,Benoit Valot,Francis Raoul,Sylvie Damyet al. Research and methods in ecohealth and conservation, GDRI Ecosystem Health and Environmental Disease Ecology, Nov 2016, Kunming, China Communication dans un congrès hal-01367365v1
Phytomanagement of contaminated lands: considerations from above-and below-ground Michel Chalot,Julie Foulon,Cyril Zappelini,Battle Karimi,Benoit Valotet al. 13th International Conference on the Biogeochemistry of Trace Elements (ICOBTE), Jul 2015, Fukuoka, Japan Communication dans un congrès hal-04263801v1
Protéome membranaire en réponse à la symbiose mycorhizienne à arbuscules par GeLC-MS/MS Cosette C. Abdallah,Jenny Renaut,Benoît Valot,Michel Zivy,Ghislaine Recorbetet al. 3. Journées Francophones Mycorhizes, Sep 2012, Nancy, France Communication dans un congrès hal-02750064v1
Fermentation rate, population size, CO2 flux and quantitative proteomics: a multi-level approach applied to alcoholic fermentation in Saccharomyces cerevisiae Warren Albertin,Philippe Marullo,Michel Aigle,Aurélie Bourgais,Olivier Langellaet al. Oeno 2011. 9è Symposium International d'Oenologie de Bordeaux, Jun 2011, Bordeaux, France. 1186 p Communication dans un congrès hal-01204311v1
Analyse phosphoprotéomique des voies de réponse au fludioxonil des champignons filamenteux Alternaria brassicicola et Botrytis cinerea Jérôme Dumur,Marlène M. Davanture,Benoît Valot,Claire Campion,Nelly Bataille-Simoneauet al. Journées des Microbiologistes de l'INRA, 2012, L'Isle sur la Sorgue, France Communication dans un congrès hal-03281861v1
Label-free 1-DE-LC-MS/MS to identify arbuscular mycorrhiza related membrane proteins Cosette C. Abdallah,Jenny Renaut,Benoît Valot,Michel Zivy,Ghislaine Recorbetet al. 3. Annual Joint Meeting on Plant Microbe Interactions, Conseil Régional de Bourgogne. FRA., Sep 2012, Dijon, France. 13 p Communication dans un congrès hal-02744745v1
Label-free 1-DE-LC-MS/MS and iTRAQ-OFFGEL-LC-MS/MS to identify arbuscular mycorrhiza-related membrane proteins. Cosette Abdallah,Eliane Dumas Gaudot,Christelle Guillier,Ghislaine G. Recorbet,Daniel D. Wipfet al. Final Cost meeting FA0603. “Plant Proteomics in Europe: where do we stand and where are we heading to?, May 2011, Dijon, France Communication dans un congrès hal-03746442v1
Phosphoproteomics to trace signal transduction Marlène M. Davanture,Benoit B. Valot,Michel M. Zivy,Sabine, Helma S. H. Fillinger-David BSPGW 2011 : Botrytis -Sclerotinia Post-Genome Workshop, Sep 2011, Lyon, France. pp.10 Communication dans un congrès hal-01000564v1
The fluioxonil induced phosphoproteomes of the phytopathogenic fungi Alternaria brassicicola and Botrytis cinerea Marlène M. Davanture,Benoit B. Valot,Claire C. Campion,Jerome J. Dumur,Nelly N. Batailléet al. 26. Fungal Genetics Conference at Silomar, Mar 2011, Asilomar, United States. pp.110 Communication dans un congrès hal-01000456v1
The fludioxonil induced phosphoproteomes of the phytopathogenic fungi Alternaria brassicicola and Botrytis cinerea Marlène M. Davanture,Benoît Valot,Claire Campion,Jérôme Dumur,Nelly Bataille-Simoneauet al. 26th Fungal Genetics Conference, 2011, Asilomar, États-Unis Communication dans un congrès hal-03281864v1
PROTIC workshop: A bioinformatics environment for proteome data validation, analysis and integration Renaud Flores,Johann J. Joets,Olivier Langella,Benoit B. Valot,Michel M. Zivyet al. Plant Genomics seminar 2010, Mar 2010, Pont Royal en Provence, France Communication dans un congrès hal-02758409v1
Subcellular proteomics sheds light on root plastid involvement in Medicago truncatula arbuscular mycorrhizal symbiosis Zeina Daher,Ghislaine Recorbet,Achref Aloui,Benoit Valot,Thierry Balliauet al. Congrès SMAP (Spectrométrie de masse et analyse protéomique), Sep 2009, Dijon, France Communication dans un congrès hal-03746862v1
Proteomes of arbuscular mycorrhizal symbiosis : past and present achievements Eliane Dumas-Gaudot,Ghislaine Recorbet,Franck Robert,Nardjis Amiour,Pierre Offreet al. Proteomlux 2008 : Proteomics in Plants, Microorganisms and Environment, 2008, Luxembourg, Luxembourg Communication dans un congrès hal-03746917v1
Proteomics to characterize the effect of a tomato genomic region on the fruit sensitivity to cold storage David Page,Barbara Gouble,Caroline Callot,Andre Kretzschmar,Benoit B. Valotet al. Proteomlux 2008, Proteomics in plants, microorganisms and environment, Oct 2008, Luxembourg, Luxembourg Communication dans un congrès hal-02756755v1
The arbuscular mycorrhizal symbiosis a modulator of cadmium stress Eliane E. Dumas-Gaudot,Achref A. Aloui,Franck F. Robert,Benoit B. Valot,Celine C. Henryet al. II WG 2 MEETING "Will plant proteomics research help in facing food, health and environmental concern?, Feb 2008, Cordoba, Spain Communication dans un congrès hal-02752183v1
Contribution of proteomics to arbuscular mycorrhiza in Medicago truncatula Benoit B. Valot,Franck F. Robert,Nardjis N. Amiour,Ghislaine G. Recorbet,Eliane E. Dumas-Gaudot Model Legumes Congress (MLC2007), Mar 2007, Tunis, Tunisia Communication dans un congrès hal-02756740v1
Could subcellular proteomics of root plastids teach us more about mycorrhizal symbiosis? Zeina Daher,Thomas Fester,Benoit B. Valot,Dominique Morandi,Benoît Schoefset al. XIII International Congress on Molecular Plant-Microbe Interactions, Jul 2007, Sorrento, Italy Communication dans un congrès hal-02754543v1
Arbuscular mycorhizal proteomes: what news at the nearby and distant horizon? Benoit B. Valot,Nardjis N. Amiour,Zeina Daher,Franck F. Robert,Ghislaine G. Recorbetet al. XIII International Congress on Molecular Plant-Microbe Interactions, Jul 2007, Sorrento, Italy Communication dans un congrès hal-02753337v1
Protein profiling analyses in arbuscular mycorrhizal symbiosis Ghislaine Recorbet,Nardjis Amiour,Benoit Valot,Gwenaelle Bestel-Corre,Franck Robertet al. 5th International Conference on Mycorrhiza (ICOM5), Jul 2006, Granada, Spain Communication dans un congrès hal-03746947v1
Membrane proteomic analyses to reveal and identify arbuscular mycorrhizal-related proteins Benoit Valot,Marc Dieu,Luc Negroni,Ghislaine Recorbet,Martine Raeset al. COST Action 8.38 Management Committee and Final meeting on "Achievement and Future Landscape for Arbuscular Mycorrhiza Research, Jun 2005, Dijon, France Communication dans un congrès hal-03747131v1
Membrane proteomic of arbuscular mycorrhiza Benoit Valot,Marc Dieu,Luc Negroni,Ghislaine Recorbet,Martine Raeset al. HUPO Congress, Aug 2005, Munich, Germany Communication dans un congrès hal-03747132v1
Proteomics: a functional genomic approach for studying mycorrhizal interactions in legumes Eliane Dumas-Gaudot,Benoit Valot,Ghislaine Recorbet,Nardjis Amiour,Gwenaelle Bestel-Correet al. Fifth European Conference on Grain Legumes - Legumes for the benefit of agriculture nutrition and the environment: their genomics, their products, and their improvement, Jun 2004, Dijon, France Communication dans un congrès hal-03747144v1

Poster de conférence (20)

Phylogenetic and resistome analysis of epidemic multidrug-resistant Acinetobacter baumannii clone Agnese Lupo,Benoit Valot,Antoine Drapeau,Estelle Saras,Bour Maximeet al. FEMS Conference on Microbiology, Jun 2022, Belgrade, Serbia Poster de conférence anses-04542385v1
Intra-patient evolution of a pulmonary strain of Pseudomonas aeruginosa from primo-colonisation to lung transplant Susie Gaillot,Catherine Llanes,Benoit Valot,Salomé Kiener,Patrick Plesiat European Young Investigators Meeting (EYIM). 44th European Cystic Fibrosis Society (ECFS) Conferences, Dec 2021, Digital, France Poster de conférence hal-03527024v1
Association antibiotique – extraits d’huiles essentielles : effets antagonistes chez Pseudomonas aeruginosa Alexandre Tetard,Susie Gaillot,Benoit Valot,Patrick Plésiat,Catherine Llanes 15ème congrès national de la Société Française de Microbiologie, Oct 2019, Paris, France Poster de conférence hal-03527394v1
Large-scale plantations of poplar at metal-contaminated phytomanagement sites: investigation of associated fungal communities Damien Blaudez,Julie Foulon,Cyril Zappelini,Alexis Durand,Lisa Ciadamidaroet al. 9th International Conference on Mycorrhiza, Jul 2017, Prague, Czech Republic Poster de conférence hal-03189704v1
Environmental metabarcoding reveals contrasting microbial communities at two poplar phytomanagement sites Michel Chalot,Julie Foulon,Cyril Zappelini,Alexis Durand,Benoït Valotet al. 18th International Conference on Heavy Metals in the Environment, Sep 2016, Gand, Belgium Poster de conférence hal-03214531v1
La microdissection laser : une technique d’analyse du profil d’expression génique et protéique des types cellulaires spécifiques de la symbiose mycorhizienne à arbuscules Christine Arnould,Sally Koegel,Lucie Geay,Michael Kälin,Benoît Valotet al. 5. Journées Scientifiques et Techniques du Réseau des Microscopistes INRA, Nov 2014, Dijon, France. 2014 Poster de conférence hal-02741805v1
Impact of phytomanagement practices on microbial communities as revealed by next-generation sequencing technology Julie Foulon,Cyril Zappelini,Battle Karimi,Benoit Valot,Damien Blaudezet al. First Global Soil Biodiversity Conference, Dec 2014, Dijon, France Poster de conférence hal-04263736v1
Exploring genetic diversity in tomato fruit with a systems biology approach Laura Pascual,Jiaxin Xu,Nelly Desplat,Benoit B. Valot,Jean-Paul Bouchetet al. 21. International Plant and Animal Genome, Jan 2013, San Diego, United States. 2013 Poster de conférence hal-02745690v1
Label-free 1-DE-LC-MS/MS to identify arbuscular mycorrhiza-related membrane proteins Cosette C. Abdallah,Jenny Renaut,Benoît Valot,Michel Zivy,Ghislaine Recorbetet al. 3. Annual Joint Meeting on Plant Microbe Interactions, Sep 2012, Dijon, France. , 15 p., 2012, Abstract of the third annual joint meetong on plant microbe interactions Poster de conférence hal-02747762v1
MassChroQ : A versatile tool for mass spectrometry quantification Edlira Nano,Benoit Valot,Olivier Langella,Ludovic Bonhomme,Mélisande Bleinet al. Final COST meeting : Plant Proteomics in Europe, 2011, May 2011, Dijon, France Poster de conférence hal-03663220v1
A Medicago truncatula root plasma membrane enriched fraction as a prerequisite for label free quantitative analysis of plasmalemma protein changes upon arbuscular mycorrhizal symbiosis Achref Aloui,Christelle Guillier,Ghislaine G. Recorbet,Benoit Valot,Daniel Wipfet al. Final Cost meeting FA0603. “Plant Proteomics in Europe: where do we stand and where are we heading to?, May 2011, Dijon, France Poster de conférence hal-03746502v1
Mycorrhization-induced changes in the root plastid proteome of Medicago truncatula Zeina Daher,Ghislaine G. Recorbet,Thierry Balliau,Benoit Valot,Michel Zivyet al. Final Cost meeting FA0603. “Plant Proteomics in Europe: where do we stand and where are we heading to?, May 2011, Dijon, France Poster de conférence hal-03746485v1
Technical improvements for analysis of récalcitrant proteins by LC-MS Cosette Abdallah,Eliane Dumas Gaudot,Ghislaine Recorbet,Christelle Guillier,Daniel Wipfet al. ProteomLux 2010. "International Conference on Proteomics in Plants, Microorganisms and Environment, Oct 2010, Luxembourg, Luxembourg Poster de conférence hal-03746595v1
Functional analysis of the membrane proteome of Medicago truncatula roots upon colonization by the arbuscular mycorrhizal fungus Glomus irregulare Christelle Guillier,Cosette Abdallah,Philippe Hammann,Benoit Valot,Jenny Renautet al. ProteomLux 2010. "International Conference on Proteomics in Plants, Microorganisms and Environment", Oct 2010, Luxembourg, Luxembourg Poster de conférence hal-03746655v1
Vers l'étude quantitative et fonctionnelle des protéomes membranaires des racines mis en jeu au cours de la symbiose mycorhizienne à arbuscules de Medicago truncatula Cosette Abdallah,Christelle Guillier,Ghislaine Recorbet,Eliane Dumas-Gaudot,Daniel Wipfet al. 2ièmes Journées Francophones Mycorhizes, Sep 2010, Bruxelles, Belgique Poster de conférence hal-03746586v1
Label-free quantitation of proteins involved in milk fat globule secretion from the mammary epithelial cell. Christelle C. Cebo,C. Henry,Christelle Lopez,Benoît Valot,M. Zivyet al. Congrès Spectrométrie de Masse & Analyse Protéomique SMAP, Sep 2009, Dijon, pp.Inconnu, 2009 Poster de conférence hal-02815016v1
Studying the arbuscular mycorrhizal symbiosis from axenic system to soilborne interactions by proteomics: which challenges to face? Eliane Dumas-Gaudot,Ghislaine Recorbet,Franck Robert,Nardjis Amiour,Pierre Offreet al. Congrès SMAP (Spectrométrie de masse et analyse protéomique), Sep 2009, Dijon, France Poster de conférence hal-03746880v1
Cellular and subcellular studies of the arbuscular mycorrhizal symbiosis in M. truncatula: a proteomic survey Zeina Daher,Ghislaine G. Recorbet,Franck Robert,Benoit Valot,Thierry Balliauet al. 6th International Conference on Mycorrhiza (ICOM6), Aug 2009, Belo Horizonte, Brazil Poster de conférence hal-03746877v1
Membrane proteomics of arbuscular mycorrhiza Benoit Valot,Odile Thiery,Achref Aloui,Ghislaine Recorbet,Marc Dieuet al. Mycorrhiza for science and society-5th International Conference on Mycorrhiza (ICOM5), Jul 2006, Granada, Spain Poster de conférence hal-03746943v1
Plant mycorrhizal interaction: What can we learn from a proteomic approach? Eliane Dumas-Gaudot,Benoit Valot,Ghislaine Recorbet,Nardjis Amiour,Gwenaelle Bestel-Corre COST Action 8.49 "Parasitic Plant Management in sustainable Agriculture", Oct 2004, Wageningen, Netherlands Poster de conférence hal-03747148v1