
Benoit Valot
Ingénieur de Recherche en Bioinformatique
177
Documents
Identifiants chercheurs
Présentation
Après un doctorat en protéomique, j’ai travaillé pendant 8 ans à la plateforme de spectrométrie de masse PAPPSO, situé en région parisienne. Suite à une mobilité interne, j’ai rejoins le laboratoire Chrono-Environnement en 2013 où je m’intéresse aux traitements des données de séquençage haut-débit appliqué à la microbiologie.
Domaines de recherche
Biologie moléculaire
Bio-Informatique, Biologie Systémique [q-bio.QM]
Compétences
Développement python/Python development
Statistique R/R statistic
Analyse de données/Data analysis
Publications
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Publications
Functional Genomic of Arbuscular Mycorrhizal Symbiosis: Why and How Using ProteomicsSymbiotic Fungi, 18, Springer Berlin Heidelberg, pp.243-274, 2009, Soil Biology, ⟨10.1007/978-3-540-95894-9_15⟩
Chapitre d'ouvrage
hal-03745563
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Plasma membrane in arbuscular mycorrhizaBenoît Schoefs. Plant Cell Compartments - Selected Topics, Research Signpost, 2008, ISBN 978-81-308-0104-9
Chapitre d'ouvrage
hal-03745603
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Proteomics of different tissuesMedicago truncatula handbook, The Samuel Roberts Noble Foundation, 2006, 0-9754303-1-9
Chapitre d'ouvrage
hal-02820000
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Impact des huiles essentielles sur la résistance aux antibiotiques – l’exemple du cinnamaldéhydeRéunion annuelle du GRD CNRS Pseudomonas, Sep 2019, Voiron, France
Communication dans un congrès
hal-03527391
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Reconstruction de la végétation actuelle et passée d’un méandre du Doubs à l’aide de marqueurs carpologiques, palynologiques et génétiques13èmes rencontres d'archeobotanique, Feb 2018, Station biologique de Besse (Auvergne), France
Communication dans un congrès
hal-02372696
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Large-scale demonstration of increased production of poplar biomass by mycorrhizal inoculation at metal-contaminated phytomanagement sites, and investigation of associated fungal communities9th International Conference on Mycorrhiza, Jul 2017, Prague, Czech Republic
Communication dans un congrès
hal-03189719
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Biomass, mineralomass and microbial communities at poplar phytomanagement sites: a ten-year study14th International Conference on the Biogeochemistry of Trace Elements (ICOBTE), Jul 2017, Zurich, Switzerland
Communication dans un congrès
hal-03189722
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Environmental metabarcoding as a relevant tool to reveal structure and composition of microbial communities at phytomanagement sites14th International Conference on Sustainable Use and Management of Soil, Sediment and Water Resources (AQUACONSOIL), Jun 2017, Lyon, France
Communication dans un congrès
hal-03189726
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Environmental metabarcoding as a tool to reveal structure and composition of microbial communities in anthropogenic soils4ème colloque de Génomique Environnementale, Sep 2017, Marseille, France
Communication dans un congrès
hal-01766402
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Microbial communities from poplar at a Hg phytomanagement site14th International Conference on the Biogeochemistry of Trace Elements (ICOBTE), Jul 2017, Zurich, Switzerland
Communication dans un congrès
hal-03528780
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Natural recolonization of tailings dumps by trees and microbes: a case study14th International Conference on the Biogeochemistry of Trace Elements (ICOBTE), Jul 2017, Zurich, Switzerland
Communication dans un congrès
hal-03189725
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New approaches to description and modeling of trophic interactions: reliable allies to study trophically-transmitted parasites?Research and methods in ecohealth and conservation, GDRI Ecosystem Health and Environmental Disease Ecology, Nov 2016, Kunming, China
Communication dans un congrès
hal-01367367
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Methods in genetics to investigate E. multilocularis transmission patternsResearch and methods in ecohealth and conservation, GDRI Ecosystem Health and Environmental Disease Ecology, Nov 2016, Kunming, China
Communication dans un congrès
hal-01367365
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Phytomanagement of contaminated lands: considerations from above-and below-ground13th International Conference on the Biogeochemistry of Trace Elements (ICOBTE), Jul 2015, Fukuoka, Japan
Communication dans un congrès
hal-04263801
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Protéome membranaire en réponse à la symbiose mycorhizienne à arbuscules par GeLC-MS/MS3. Journées Francophones Mycorhizes, Sep 2012, Nancy, France
Communication dans un congrès
hal-02750064
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Fermentation rate, population size, CO2 flux and quantitative proteomics: a multi-level approach applied to alcoholic fermentation in Saccharomyces cerevisiaeOeno 2011. 9è Symposium International d'Oenologie de Bordeaux, Jun 2011, Bordeaux, France. 1186 p
Communication dans un congrès
hal-01204311
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Analyse phosphoprotéomique des voies de réponse au fludioxonil des champignons filamenteux Alternaria brassicicola et Botrytis cinereaJournées des Microbiologistes de l'INRA, 2012, L'Isle sur la Sorgue, France
Communication dans un congrès
hal-03281861
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Label-free 1-DE-LC-MS/MS to identify arbuscular mycorrhiza related membrane proteins3. Annual Joint Meeting on Plant Microbe Interactions, Conseil Régional de Bourgogne. FRA., Sep 2012, Dijon, France. 13 p
Communication dans un congrès
hal-02744745
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Label-free 1-DE-LC-MS/MS and iTRAQ-OFFGEL-LC-MS/MS to identify arbuscular mycorrhiza-related membrane proteins.Final Cost meeting FA0603. “Plant Proteomics in Europe: where do we stand and where are we heading to?, May 2011, Dijon, France
Communication dans un congrès
hal-03746442
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Phosphoproteomics to trace signal transductionBSPGW 2011 : Botrytis -Sclerotinia Post-Genome Workshop, Sep 2011, Lyon, France. pp.10
Communication dans un congrès
hal-01000564
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The fluioxonil induced phosphoproteomes of the phytopathogenic fungi Alternaria brassicicola and Botrytis cinerea26. Fungal Genetics Conference at Silomar, Mar 2011, Asilomar, United States. pp.110
Communication dans un congrès
hal-01000456
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The fludioxonil induced phosphoproteomes of the phytopathogenic fungi Alternaria brassicicola and Botrytis cinerea26th Fungal Genetics Conference, 2011, Asilomar, États-Unis
Communication dans un congrès
hal-03281864
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PROTIC workshop: A bioinformatics environment for proteome data validation, analysis and integrationPlant Genomics seminar 2010, Mar 2010, Pont Royal en Provence, France
Communication dans un congrès
hal-02758409
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Subcellular proteomics sheds light on root plastid involvement in Medicago truncatula arbuscular mycorrhizal symbiosisCongrès SMAP (Spectrométrie de masse et analyse protéomique), Sep 2009, Dijon, France
Communication dans un congrès
hal-03746862
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Proteomes of arbuscular mycorrhizal symbiosis : past and present achievementsProteomlux 2008 : Proteomics in Plants, Microorganisms and Environment, 2008, Luxembourg, Luxembourg
Communication dans un congrès
hal-03746917
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Proteomics to characterize the effect of a tomato genomic region on the fruit sensitivity to cold storageProteomlux 2008, Proteomics in plants, microorganisms and environment, Oct 2008, Luxembourg, Luxembourg
Communication dans un congrès
hal-02756755
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The arbuscular mycorrhizal symbiosis a modulator of cadmium stressII WG 2 MEETING "Will plant proteomics research help in facing food, health and environmental concern?, Feb 2008, Cordoba, Spain
Communication dans un congrès
hal-02752183
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Contribution of proteomics to arbuscular mycorrhiza in Medicago truncatulaModel Legumes Congress (MLC2007), Mar 2007, Tunis, Tunisia
Communication dans un congrès
hal-02756740
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Arbuscular mycorhizal proteomes: what news at the nearby and distant horizon?XIII International Congress on Molecular Plant-Microbe Interactions, Jul 2007, Sorrento, Italy
Communication dans un congrès
hal-02753337
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Could subcellular proteomics of root plastids teach us more about mycorrhizal symbiosis?XIII International Congress on Molecular Plant-Microbe Interactions, Jul 2007, Sorrento, Italy
Communication dans un congrès
hal-02754543
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Protein profiling analyses in arbuscular mycorrhizal symbiosis5th International Conference on Mycorrhiza (ICOM5), Jul 2006, Granada, Spain
Communication dans un congrès
hal-03746947
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Membrane proteomic analyses to reveal and identify arbuscular mycorrhizal-related proteinsCOST Action 8.38 Management Committee and Final meeting on "Achievement and Future Landscape for Arbuscular Mycorrhiza Research, Jun 2005, Dijon, France
Communication dans un congrès
hal-03747131
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Membrane proteomic of arbuscular mycorrhizaHUPO Congress, Aug 2005, Munich, Germany
Communication dans un congrès
hal-03747132
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Proteomics: a functional genomic approach for studying mycorrhizal interactions in legumesFifth European Conference on Grain Legumes - Legumes for the benefit of agriculture nutrition and the environment: their genomics, their products, and their improvement, Jun 2004, Dijon, France
Communication dans un congrès
hal-03747144
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Phylogenetic and resistome analysis of epidemic multidrug-resistant Acinetobacter baumannii cloneFEMS Conference on Microbiology, Jun 2022, Belgrade, Serbia
Poster de conférence
anses-04542385
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Intra-patient evolution of a pulmonary strain of Pseudomonas aeruginosa from primo-colonisation to lung transplantEuropean Young Investigators Meeting (EYIM). 44th European Cystic Fibrosis Society (ECFS) Conferences, Dec 2021, Digital, France
Poster de conférence
hal-03527024
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Association antibiotique – extraits d’huiles essentielles : effets antagonistes chez Pseudomonas aeruginosa15ème congrès national de la Société Française de Microbiologie, Oct 2019, Paris, France
Poster de conférence
hal-03527394
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Large-scale plantations of poplar at metal-contaminated phytomanagement sites: investigation of associated fungal communities9th International Conference on Mycorrhiza, Jul 2017, Prague, Czech Republic
Poster de conférence
hal-03189704
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Environmental metabarcoding reveals contrasting microbial communities at two poplar phytomanagement sites18th International Conference on Heavy Metals in the Environment, Sep 2016, Gand, Belgium
Poster de conférence
hal-03214531
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La microdissection laser : une technique d’analyse du profil d’expression génique et protéique des types cellulaires spécifiques de la symbiose mycorhizienne à arbuscules5. Journées Scientifiques et Techniques du Réseau des Microscopistes INRA, Nov 2014, Dijon, France. 2014
Poster de conférence
hal-02741805
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Impact of phytomanagement practices on microbial communities as revealed by next-generation sequencing technologyFirst Global Soil Biodiversity Conference, Dec 2014, Dijon, France
Poster de conférence
hal-04263736
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Exploring genetic diversity in tomato fruit with a systems biology approach21. International Plant and Animal Genome, Jan 2013, San Diego, United States. 2013
Poster de conférence
hal-02745690
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Label-free 1-DE-LC-MS/MS to identify arbuscular mycorrhiza-related membrane proteins3. Annual Joint Meeting on Plant Microbe Interactions, Sep 2012, Dijon, France. , 15 p., 2012, Abstract of the third annual joint meetong on plant microbe interactions
Poster de conférence
hal-02747762
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A Medicago truncatula root plasma membrane enriched fraction as a prerequisite for label free quantitative analysis of plasmalemma protein changes upon arbuscular mycorrhizal symbiosisFinal Cost meeting FA0603. “Plant Proteomics in Europe: where do we stand and where are we heading to?, May 2011, Dijon, France
Poster de conférence
hal-03746502
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MassChroQ : A versatile tool for mass spectrometry quantificationFinal COST meeting : Plant Proteomics in Europe, 2011, May 2011, Dijon, France
Poster de conférence
hal-03663220
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Mycorrhization-induced changes in the root plastid proteome of Medicago truncatulaFinal Cost meeting FA0603. “Plant Proteomics in Europe: where do we stand and where are we heading to?, May 2011, Dijon, France
Poster de conférence
hal-03746485
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Technical improvements for analysis of récalcitrant proteins by LC-MSProteomLux 2010. "International Conference on Proteomics in Plants, Microorganisms and Environment, Oct 2010, Luxembourg, Luxembourg
Poster de conférence
hal-03746595
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Vers l'étude quantitative et fonctionnelle des protéomes membranaires des racines mis en jeu au cours de la symbiose mycorhizienne à arbuscules de Medicago truncatula2ièmes Journées Francophones Mycorhizes, Sep 2010, Bruxelles, Belgique
Poster de conférence
hal-03746586
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Functional analysis of the membrane proteome of Medicago truncatula roots upon colonization by the arbuscular mycorrhizal fungus Glomus irregulareProteomLux 2010. "International Conference on Proteomics in Plants, Microorganisms and Environment", Oct 2010, Luxembourg, Luxembourg
Poster de conférence
hal-03746655
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Label-free quantitation of proteins involved in milk fat globule secretion from the mammary epithelial cell.Congrès Spectrométrie de Masse & Analyse Protéomique SMAP, Sep 2009, Dijon, pp.Inconnu, 2009
Poster de conférence
hal-02815016
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Studying the arbuscular mycorrhizal symbiosis from axenic system to soilborne interactions by proteomics: which challenges to face?Congrès SMAP (Spectrométrie de masse et analyse protéomique), Sep 2009, Dijon, France
Poster de conférence
hal-03746880
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Cellular and subcellular studies of the arbuscular mycorrhizal symbiosis in M. truncatula: a proteomic survey6th International Conference on Mycorrhiza (ICOM6), Aug 2009, Belo Horizonte, Brazil
Poster de conférence
hal-03746877
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Membrane proteomics of arbuscular mycorrhizaMycorrhiza for science and society-5th International Conference on Mycorrhiza (ICOM5), Jul 2006, Granada, Spain
Poster de conférence
hal-03746943
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Plant mycorrhizal interaction: What can we learn from a proteomic approach?COST Action 8.49 "Parasitic Plant Management in sustainable Agriculture", Oct 2004, Wageningen, Netherlands
Poster de conférence
hal-03747148
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