Benoit Valot

Ingénieur de Recherche en Bioinformatique
177
Documents
Identifiants chercheurs

Présentation

Après un doctorat en protéomique, j’ai travaillé pendant 8 ans à la plateforme de spectrométrie de masse PAPPSO, situé en région parisienne. Suite à une mobilité interne, j’ai rejoins le laboratoire Chrono-Environnement en 2013 où je m’intéresse aux traitements des données de séquençage haut-débit appliqué à la microbiologie.

Domaines de recherche

Biologie moléculaire Bio-Informatique, Biologie Systémique [q-bio.QM]

Compétences

Développement python/Python development Statistique R/R statistic Analyse de données/Data analysis

Publications

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Publications

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High-risk clones of Pseudomonas aeruginosa contaminate the drinking water networks of French cities

Ani Horikian , Audrey Jeanvoine , Abdallah Amarache , Morgane Tourtet , Jérôme Ory et al.
npj Clean Water, 2024, 7 (1), pp.35. ⟨10.1038/s41545-024-00323-8⟩
Article dans une revue hal-04612386 v1
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Challenging the phylogenetic relationships among Echinococcus multilocularis isolates from main endemic areas

Séverine Lallemand , Jorge Oyhenart , Benoit Valot , Romain Borne , Louis Bohard et al.
International Journal for Parasitology, 2024, 54 (11), pp.569-582. ⟨10.1016/j.ijpara.2024.05.004⟩
Article dans une revue anses-04862405 v1

Development of a cockroach (Blattella germanica) qPCR for the objective measurement of exposure at home

Steffi Rocchi , Benoit Valot , Audrey Laboissière , Audrey Guitton , Emeline Scherer et al.
Science of the Total Environment, 2023, 864, pp.160965. ⟨10.1016/j.scitotenv.2022.160965⟩
Article dans une revue hal-04212326 v1
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Genome Analysis of Methicillin-Resistant and Methicillin-Susceptible Staphylococcus aureus ST398 Strains Isolated from Patients with Invasive Infection

Abdeljallil Zeggay , Alban Atchon , Benoit Valot , Didier Hocquet , Xavier Bertrand et al.
Microorganisms, 2023, 11 (6), pp.1446. ⟨10.3390/microorganisms11061446⟩
Article dans une revue hal-04157672 v1
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From modern-day parasitology to paleoparasitology: the elusive past record and evolution of Cryptosporidium

Kévin Roche , Frédéric Dalle , Nicolas Capelli , Romain Borne , Isabelle Jouffroy-Bapicot et al.
Frontiers in Microbiology, 2023, 14, ⟨10.3389/fmicb.2023.1249884⟩
Article dans une revue hal-04440435 v1
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Genome-based typing reveals rare events of patient contamination with Pseudomonas aeruginosa from other patients and sink traps in a medical intensive care unit

C. Couchoud , X. Bertrand , M. Bourgeon , G. Piton , B. Valot et al.
Journal of Hospital Infection, 2023, 134, pp.63-70. ⟨10.1016/j.jhin.2023.01.010⟩
Article dans une revue hal-04157658 v1
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Multiple host colonization and differential expansion of multidrug-resistant ST25-Acinetobacter baumannii clades

Agnese Lupo , Benoît Valot , Estelle Saras , Antoine Drapeau , Marine Robert et al.
Scientific Reports, 2023, 13 (1), pp.21854. ⟨10.1038/s41598-023-49268-x⟩
Article dans une revue anses-04375645 v1
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Increased gut permeability and intestinal inflammation precede arthritis onset in the adjuvant-induced model of arthritis

Sophie Hecquet , Perle Totoson , Hélène Martin , Marie-Paule Algros , Philippe Saas et al.
Arthritis Research & Therapy, 2023, 25 (1), pp.95. ⟨10.1186/s13075-023-03069-9⟩
Article dans une revue hal-04235487 v1

Longitudinal follow‐up of HPV16 sequence after cervical infection: Low intrahost variation and no correlation with clinical evolution

Alice Debernardi , Benoit Valot , Julien Almarcha , David Guenat , Didier Hocquet et al.
Journal of Medical Virology, 2022, 94 (11), pp.5512-5518. ⟨10.1002/jmv.27978⟩
Article dans une revue hal-04602308 v1
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One Health compartmental analysis of ESBL-producing Escherichia coli on Reunion Island reveals partitioning between humans and livestock

Guillaume Miltgen , Daniel Martak , Benoit Valot , Laure Kamus , Thomas Garrigos et al.
Journal of Antimicrobial Chemotherapy, 2022, 77 (5), pp.1254-1262. ⟨10.1093/jac/dkac054⟩
Article dans une revue hal-03830253 v1

High prevalence of Pseudomonas aeruginosa carriage in residents of French and German long-term care facilities

Daniel Martak , Houssein Gbaguidi-Haore , Alexandre Meunier , Benoit Valot , Nadine Conzelmann et al.
Clinical Microbiology and Infection, 2022, 28 (10), pp.1353-1358. ⟨10.1016/j.cmi.2022.05.004⟩
Article dans une revue hal-03932547 v1
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Are Methionine Sulfoxide-Containing Proteins Related to Seed Longevity? A Case Study of Arabidopsis thaliana Dry Mature Seeds Using Cyanogen Bromide Attack and Two-Dimensional-Diagonal Electrophoresis

Ewa Marzena Kalemba , Benoît Valot , Dominique Job , Christophe Bailly , Patrice Meimoun
Plants, 2022, 11 (4), pp.569. ⟨10.3390/plants11040569⟩
Article dans une revue hal-03615936 v1
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Exposure of Pseudomonas aeruginosa to Cinnamaldehyde Selects Multidrug Resistant Mutants

Alexandre Tetard , Susie Gaillot , Eline Dubois , Soumaya Aarras , Benoît Valot et al.
Antibiotics, 2022, 11 (12), pp.1790. ⟨10.3390/antibiotics11121790⟩
Article dans une revue hal-04225105 v1

Populations of extended-spectrum β-lactamase-producing Escherichia coli and Klebsiella pneumoniae are different in human-polluted environment and food items: a multicentre European study

Daniel Martak , Julia Guther , Tess Verschuuren , Benoit Valot , Nadine Conzelmann et al.
Clinical Microbiology and Infection, 2022, 28 (3), pp.447.e7-447.e14. ⟨10.1016/j.cmi.2021.07.022⟩
Article dans une revue hal-03932913 v1
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Populations of extended-spectrum β-lactamase-producing Escherichia coli and Klebsiella pneumoniae are different in human-polluted environment and food items: a multicentre European study

Daniel Martak , Julia Guther , Tess Verschuuren , Benoit Valot , Nadine Conzelmann et al.
Clinical Microbiology and Infection, 2022, 28 (3), pp.447.e7-447.e14. ⟨10.1016/j.cmi.2021.07.022⟩
Article dans une revue hal-03360863 v1
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Multi-Omics Approaches Unravel Specific Features of Embryo and Endosperm in Rice Seed Germination

Naoto Sano , Imen Lounifi , Gwendal Cueff , Boris Collet , Gilles Clément et al.
Frontiers in Plant Science, 2022, 13, pp.867263. ⟨10.3389/fpls.2022.867263⟩
Article dans une revue hal-03733327 v1
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Molecular Epidemiology of Azole-Resistant Aspergillus fumigatus in France Shows Patient and Healthcare Links to Environmentally Occurring Genotypes

Steffi Rocchi , Thomas Sewell , Benoit Valot , Chloé Godeau , Audrey Laboissiere et al.
Frontiers in Cellular and Infection Microbiology, 2021, 11, pp.729476. ⟨10.3389/fcimb.2021.729476⟩
Article dans une revue hal-03529832 v1
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Partial overlap of fungal communities associated with nettle and poplar roots when co-occurring at a trace metal contaminated site

Loïc Yung , Coralie Bertheau , Flavien Tafforeau , Cyril Zappelini , Benoit Valot et al.
Science of the Total Environment, 2021, 782, ⟨10.1016/j.scitotenv.2021.146692⟩
Article dans une revue hal-03192784 v1
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Cell wall proteomic datasets of stems and leaves of Brachypodium distachyon

Thibaut Douché , Benoît Valot , Thierry Balliau , Hélène San Clemente , Michel Zivy et al.
Data in Brief, 2021, 35, pp.1-4. ⟨10.1016/j.dib.2021.106818⟩
Article dans une revue (data paper) hal-03259235 v1

The rise and the fall of a Pseudomonas aeruginosa endemic lineage in a hospital

Marie Petitjean , Paulo Juarez , Alexandre Meunier , Etienne Daguindau , Hélène Puja et al.
Microbial Genomics, 2021, 7 (9), ⟨10.1099/mgen.0.000629⟩
Article dans une revue hal-03356587 v1
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Combined Bacteriophage and Antibiotic Treatment Prevents Pseudomonas aeruginosa Infection of Wild Type and cftr- Epithelial Cells

Alexandre Luscher , Juliette Simonin , Léna Falconnet , Benoit B. Valot , Didier Hocquet et al.
Frontiers in Microbiology, 2020, 11, pp.1947. ⟨10.3389/fmicb.2020.01947⟩
Article dans une revue hal-03054559 v1
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Deciphering the role of insertion sequences in the evolution of bacterial epidemic pathogens with panISa software

Charlotte Couchoud , Xavier Bertrand , Benoît Valot , Didier Hocquet
Microbial Genomics, 2020, 6 (6), pp.e000356. ⟨10.1099/mgen.0.000356⟩
Article dans une revue hal-02539297 v1
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Genome analysis of enterobacteriaceae with non-wild type susceptibility to third-generation cephalosporins recovered from diseased dogs and cats in Europe

Line Pepin-Puget , Farid El Garch , Xavier Bertrand , Benoit Valot , Didier Hocquet
Veterinary Microbiology, 2020, 242, pp.108601. ⟨10.1016/j.vetmic.2020.108601⟩
Article dans une revue hal-02537485 v1
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Indoor Microbiome: Quantification of Exposure and Association with Geographical Location, Meteorological Factors, and Land Use in France

Steffi Rocchi , Gabriel Reboux , Emeline Scherer , Audrey Laboissière , Cécile Zaros et al.
Microorganisms, 2020, 8 (3), pp.341. ⟨10.3390/microorganisms8030341⟩
Article dans une revue hal-02543250 v1

Antimicrobial susceptibility of nine udder pathogens recovered from bovine clinical mastitis milk in Europe 2015–2016: VetPath results

Farid El Garch , Myriam Youala , Shabbir Simjee , Hilde Moyaert , Rebecca Klee et al.
Veterinary Microbiology, 2020, 245, pp.108644. ⟨10.1016/j.vetmic.2020.108644⟩
Article dans une revue hal-03054008 v1
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Comparison of pulsed-field gel electrophoresis and whole-genome-sequencing-based typing confirms the accuracy of pulsed-field gel electrophoresis for the investigation of local Pseudomonas aeruginosa outbreaks

D. Martak , A. Meunier , M. Sauget , P. Cholley , M. Thouverez et al.
Journal of Hospital Infection, 2020, 105 (4), pp.643-647. ⟨10.1016/j.jhin.2020.06.013⟩
Article dans une revue hal-03044091 v1

High genetic diversity among methicillin-susceptible Staphylococcus pseudintermedius in dogs in Europe

Marisa Haenni , Farid El Garch , Christine Miossec , Jean-Yves Madec , Didier Hocquet et al.
Journal of Global Antimicrobial Resistance, 2020, 21, pp.57-59. ⟨10.1016/j.jgar.2020.02.016⟩
Article dans une revue hal-02541555 v1
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High Prevalence of Human-Associated Escherichia coli in Wetlands Located in Eastern France

Daniel Martak , Charles Henriot , Marion Broussier , Charlotte Couchoud , Benoit Valot et al.
Frontiers in Microbiology, 2020, 11, pp.552566. ⟨10.3389/fmicb.2020.552566⟩
Article dans une revue hal-03040847 v1

Genotypic study of Citrobacter koseri , an emergent platelet contaminant since 2012 in France

Audrey Emery , Nadine Marpaux , Christian Naegelen , Benoit Valot , Pascal Morel et al.
Transfusion, 2020, 60 (2), pp.245-249. ⟨10.1111/trf.15617⟩
Article dans une revue hal-02541556 v1
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Cholesterol-Rich Microdomains Contribute to PAR1 Signaling in Platelets Despite a Weak Localization of the Receptor in These Microdomains

Vahideh Rabani , Jennifer Lagoutte-Renosi , Jennifer Series , Benoit Valot , Jean-Marie Xuereb et al.
International Journal of Molecular Sciences, 2020, 21 (21), pp.8065. ⟨10.3390/ijms21218065⟩
Article dans une revue hal-04814698 v1
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Combining Standard Molecular Typing and Whole Genome Sequencing to Investigate Pseudomonas aeruginosa Epidemiology in Intensive Care Units

Bárbara Magalhães , Benoit Valot , Mohamed Abdelbary , Guy Prod'Hom , Gilbert Greub et al.
Frontiers in Public Health, 2020, 8, pp.00003. ⟨10.3389/fpubh.2020.00003⟩
Article dans une revue hal-03531160 v1
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Production of Norspermidine Contributes to Aminoglycoside Resistance in pmrAB Mutants of Pseudomonas aeruginosa

Arnaud Bolard , Monika Schniederjans , Susanne Haüssler , Pauline Triponney , Benoit Valot et al.
Antimicrobial Agents and Chemotherapy, 2019, 63 (10), pp.e01044-19. ⟨10.1128/AAC.01044-19⟩
Article dans une revue hal-02438158 v1
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Contamination of a hospital plumbing system by persister cells of a copper-tolerant high-risk clone of Pseudomonas aeruginosa

Audrey Jeanvoine , Alexandre Meunier , Hélène Puja , Xavier Bertrand , Benoît Valot et al.
Water Research, 2019, 157, pp.579-586. ⟨10.1016/j.watres.2019.04.011⟩
Article dans une revue hal-02315692 v1

Carbapenem-Susceptible OXA-23-Producing Proteus mirabilis in the French Community

Anaïs Potron , Didier Hocquet , Pauline Triponney , Patrick Plesiat , Xavier Bertrand et al.
Antimicrobial Agents and Chemotherapy, 2019, 63 (6), ⟨10.1128/AAC.00191-19⟩
Article dans une revue hal-02315697 v1
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Identification of Diverse Integron and Plasmid Structures Carrying a Novel Carbapenemase Among Pseudomonas Species

Eleni Liapis , Maxime Bour , Pauline Triponney , Thomas Jové , Jean-Ralph Zahar et al.
Frontiers in Microbiology, 2019, 10, pp.404. ⟨10.3389/fmicb.2019.00404⟩
Article dans une revue hal-02438246 v1

ISAba1-dependent overexpression of eptA in clinical strains of Acinetobacter baumannii resistant to colistin

Anaïs Potron , Jean-Baptiste Vuillemenot , Hélène Puja , Pauline Triponney , Maxime Bour et al.
Journal of Antimicrobial Chemotherapy, 2019, 74 (9), pp.2544-2550. ⟨10.1093/jac/dkz241⟩
Article dans une revue hal-04226270 v1
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Combined Proteomic and Metabolomic Profiling of the Arabidopsis thaliana vps29 Mutant Reveals Pleiotropic Functions of the Retromer in Seed Development

Thomas Durand , Gwendal Cueff , Béatrice Godin , Benoît Valot , Gilles Clément et al.
International Journal of Molecular Sciences, 2019, 20 (2), pp.362. ⟨10.3390/ijms20020362⟩
Article dans une revue hal-02401707 v1

Storage mite concentrations are underestimated compared to house dust mite concentrations

Gabriel Reboux , Benoit B. Valot , Steffi Rocchi , Emeline Scherer , Sandrine Roussel et al.
Experimental and Applied Acarology, 2019, 77 (4), pp.511-525. ⟨10.1007/s10493-019-00376-2⟩
Article dans une revue hal-02307828 v1

Carbapenem-Susceptible OXA-23-Producing Proteus mirabilis in the French Community

Anaïs Potron , Didier Hocquet , Pauline Triponney , Patrick Plésiat , Xavier Bertrand et al.
Antimicrobial Agents and Chemotherapy, 2019, 63 (6), ⟨10.1128/AAC.00191-19⟩
Article dans une revue hal-04226443 v1
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Fourier-Transform InfraRed Spectroscopy Can Quickly Type Gram-Negative Bacilli Responsible for Hospital Outbreaks

Daniel Martak , Benoît Valot , Marlène Sauget , Pascal Cholley , Michelle Thouverez et al.
Frontiers in Microbiology, 2019, 10, pp.1440. ⟨10.3389/fmicb.2019.01440⟩
Article dans une revue hal-02315678 v1
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How Do Richness and Composition of Diet Shape Trace Metal Exposure in a Free-Living Generalist Rodent, Apodemus sylvaticus

Shinji Ozaki , Clémentine Fritsch , Benoît Valot , Frédéric Mora , Thierry Cornier et al.
Environmental Science and Technology, 2019, 53 (10), pp.5977-5986. ⟨10.1021/acs.est.8b07194⟩
Article dans une revue hal-02316627 v1

Global emergence of the widespread Pseudomonas aeruginosa ST235 clone

D Treepong , D Kos , D Guyeux , D. Blanc , B. Bertrand et al.
Clinical Microbiology and Infection, 2018, 24 (3), pp.258 - 266. ⟨10.1016/j.cmi.2017.06.018⟩
Article dans une revue hal-01812638 v1
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Does pollution influence small mammal diet in the field? A metabarcoding approach in a generalist consumer

Shinji Ozaki , Clémentine Fritsch , Benoît Valot , Frédéric Mora , Renaud Scheifler et al.
Molecular Ecology, 2018, 27 (18), pp.3700-3713. ⟨10.1111/mec.14823⟩
Article dans une revue hal-02368039 v1

panISa: Ab initio detection of insertion sequences in bacterial genomes from short read sequence data

Panisa Treepong , Christophe Guyeux , Alexandre Meunier , Charlotte Couchoud , Didier Hocquet et al.
Bioinformatics, 2018, 34 (22), pp.3795-3800. ⟨10.1093/bioinformatics/bty479⟩
Article dans une revue hal-02438015 v1

Development of a quantitative PCR detecting Cunninghamella bertholletiae to help in diagnosing this rare and aggressive mucormycosis

Anne-Pauline Bellanger , Ana Berceanu , Steffi Rocchi , Benoit Valot , Jean Fontan et al.
Bone Marrow Transplantation, 2018, ⟨10.1038/s41409-018-0194-5⟩
Article dans une revue hal-01791907 v1

Determination of azole fungal residues in soils and detection of Aspergillus fumigatus-resistant strains in market gardens of Eastern France

Steffi Rocchi , Manon Ponçot , Nadia Morin-Crini , Audrey Laboissière , Benoît Valot et al.
Environmental Science and Pollution Research, 2018, 25 (32), pp.32015-32023. ⟨10.1007/s11356-018-3177-6⟩
Article dans une revue hal-01957023 v1
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Bacterial diversity associated with poplar trees grown on a Hg-contaminated site: Community characterization and isolation of Hg-resistant plant growth-promoting bacteria

Alexis Durand , François Maillard , Vanessa Alvarez-Lopez , Sarah Guinchard , Coralie Bertheau et al.
Science of the Total Environment, 2018, 622-623, pp.1165-1177. ⟨10.1016/j.scitotenv.2017.12.069⟩
Article dans une revue hal-01662763 v1

Biofilm biodiversity in French and Swiss show caves using the metabarcoding approach: First data

Stéphane Pfendler , Battle Karimi , Pierre-Alain Maron , Lisa Ciadamidaro , Benoit Valot et al.
Science of the Total Environment, 2018, 615, pp.1207 - 1217. ⟨10.1016/j.scitotenv.2017.10.054⟩
Article dans une revue hal-01618378 v1

Circulating cell-free DNA in patients with alveolar echinococcosis

Alice Baraquin , Eric Hervouet , Carine Richou , Pierre Flori , Paul Peixoto et al.
Molecular and Biochemical Parasitology, 2018, 222, pp.14 - 20. ⟨10.1016/j.molbiopara.2018.04.004⟩
Article dans une revue hal-01863922 v1

Investigating the genetic diversity of Echinococcus granulosus sensu stricto with new microsatellites

Gérald Umhang , Frédéric Grenouillet , Vanessa Bastid , Selim M’rad , Benoit B. Valot et al.
Parasitology Research, 2018, 117 (9), pp.2743-2755. ⟨10.1007/s00436-018-5963-y⟩
Article dans une revue hal-02195671 v1

High prevalence and moderate diversity of Pseudomonas aeruginosa in the U-bends of high-risk units in hospital

Amélie Varin , Benoît Valot , Pascal Cholley , Camille Morel , Michelle Thouverez et al.
International Journal of Hygiene and Environmental Health, 2017, 220 (5), pp.880 - 885. ⟨10.1016/j.ijheh.2017.04.003⟩
Article dans une revue hal-01664766 v1

Can MALDI-TOF Mass Spectrometry Reasonably Type Bacteria?

Marlène Sauget , Benoît Valot , Xavier Bertrand , Didier Hocquet
Trends in Microbiology, 2017
Article dans une revue hal-01505999 v1
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Environmental Metabarcoding Reveals Contrasting Belowground and Aboveground Fungal Communities from Poplar at a Hg Phytomanagement Site

Alexis Durand , François Maillard , Julie Foulon , Hyun S. Gweon , Benoit Valot et al.
Microbial ecology, 2017, 74, pp.795-809. ⟨10.1007/s00248-017-0984-0⟩
Article dans une revue hal-01518636 v1

X!TandemPipeline: a tool to manage sequence redundancy for protein inference and phosphosite identification

Olivier Langella , Benoît Valot , Thierry Balliau , Mélisande Blein-Nicolas , Ludovic Bonhomme et al.
Journal of Proteome Research, 2017, 16 (2), pp.494-503. ⟨10.1021/acs.jproteome.6b00632⟩
Article dans une revue hal-01484169 v1

DNA metabarcoding to assess indoor fungal communities: Electrostatic dust collectors and Illumina sequencing

Steffi Rocchi , Benoît Valot , Gabriel Reboux , Laurence Millon
Journal of Microbiological Methods, 2017, 139, pp.107 - 112. ⟨10.1016/j.mimet.2017.05.014⟩
Article dans une revue hal-01664751 v1
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Genomic characterization of a local epidemic Pseudomonas aeruginosa reveals specific features of the widespread clone ST395

Marie Petitjean , Daniel Martak , Alicia Silvant , Xavier Bertrand , Benoit Valot et al.
Microbial Genomics, 2017, 3 (10), ⟨10.1099/mgen.0.000129⟩
Article dans une revue hal-01664243 v1

An immunoproteomic approach revealed antigenic proteins enhancing serodiagnosis performance of bird fancier's lung

Adeline Rouzet , Gabriel Reboux , Jean-Charles Dalphin , Anne Gondouin , Paul de Vuyst et al.
Journal of Immunological Methods, 2017, 450, pp.58 - 65. ⟨10.1016/j.jim.2017.07.012⟩
Article dans une revue hal-01664277 v1

Screening of antigenic vesicular fluid proteins of Echinococcus multilocularis as potential viability biomarkers to monitor drug response in alveolar echinococcosis patients

Benoit Valot , Bénédicte Rognon , Anais Prenel , Alice Baraquin , Jenny Knapp et al.
PROTEOMICS - Clinical Applications, 2017, ⟨10.1002/prca.201700010⟩
Article dans une revue hal-01667558 v1
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An Integrated “Multi-Omics” Comparison of Embryo and Endosperm Tissue-Specific Features and Their Impact on Rice Seed Quality

Marc M. Galland , Dongli He , Imen I. Lounifi , Erwann Arc , Gilles Clément et al.
Frontiers in Plant Science, 2017, 8, pp.1984. ⟨10.3389/fpls.2017.01984⟩
Article dans une revue hal-01645144 v1

Association between Pseudomonas aeruginosa positive water samples and healthcare-associated cases: nine-year study at one university hospital

Hélène Bouxom , Damien Fournier , Kévin Bouiller , Didier Hocquet , Xavier Bertrand et al.
Journal of Hospital Infection, 2017, 96 (3), pp.238 - 243. ⟨10.1016/j.jhin.2016.12.007⟩
Article dans une revue hal-01863884 v1

Usefulness of à la carte antigens for bird fancier’s lung serodiagnosis: total dropping extract and/or dropping’s microflora antigens

Adeline Rouzet , Gabriel Reboux , Jean-Charles Dalphin , Paul de Vuyst , Audrey Laboissière et al.
Journal of Medical Microbiology, 2017, 66 (10), pp.1467 - 1470. ⟨10.1099/jmm.0.000586⟩
Article dans une revue hal-01667609 v1
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Pyomelanin-producing Pseudomonas aeruginosa selected during chronic infections have a large chromosomal deletion which confers resistance to pyocins.

Didier Hocquet , Marie Petitjean , Laurence Rohmer , Benoît Valot , Hemantha D Kulasekara et al.
Environmental Microbiology, 2016, Ecophysiology of Pseudomonas, 18 (10), pp.3482-3493. ⟨10.1111/1462-2920.13336⟩
Article dans une revue hal-01508741 v1

Environmental metabarcoding reveals contrasting microbial communities at two poplar phytomanagement sites

Julie Foulon , Cyril Zappelini , Alexis Durand , Benoit Valot , Olivier Girardclos et al.
Science of the Total Environment, 2016, 571, pp.1230 - 1240. ⟨10.1016/j.scitotenv.2016.07.151⟩
Article dans une revue hal-01512323 v1

Positive fungal quantitative PCR and Th17 cytokine detection in bronchoalveolar lavage fluids: Complementary biomarkers of hypersensitivity pneumonitis?

Anne-Pauline Bellanger , Houssein Gbaguidi-Haore , Anne Gondoin , Jean-Rene Pallandre , Mallory Vacheyrou et al.
Journal of Immunological Methods, 2016, 434, pp.61-5
Article dans une revue hal-01368319 v1
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Impact of poplar-based phytomanagement on soil properties and microbial communities in a metal-contaminated site

Julie Foulon , Cyril Zappelini , Alexis Durand , Benoit Valot , Damien Blaudez et al.
FEMS Microbiology Ecology, 2016, 92 (10), pp.fiw163. ⟨10.1093/femsec/fiw163⟩
Article dans une revue hal-01512324 v1

Common peptide epitopes induce cross-reactivity in hypersensitivity pneumonitis serodiagnosis.

Laurence Millon , Benedicte Rognon , Benoit Valot , Coralie Barrera , Anne Pauline Bellanger et al.
Journal of Allergy and Clinical Immunology, 2016
Article dans une revue hal-01368314 v1
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Identification of Antigenic Proteins from Lichtheimia corymbifera for Farmer's Lung Disease Diagnosis.

Bénédicte Rognon , Coralie Barrera , Michel Monod , Benoit Valot , Sandrine Roussel et al.
PLoS ONE, 2016, 11 (8), pp.e0160888. ⟨10.1371/journal.pone.0160888⟩
Article dans une revue hal-01368315 v1

Assessment of pets (cats and dogs) in homes using electrostatic dust collectors and QPCR: new tools to evaluate exposure and risk of allergies.

Emeline Scherer , Benoit Valot , Mallory Vacheyrou , Alexandre Naegele , Jenny Knapp et al.
International Journal of Environmental Health Research, 2016, 26 (5-6), pp.1-11. ⟨10.1080/09603123.2016.1217316⟩
Article dans une revue hal-01368313 v1

Quantification of Saprolegnia parasitica in river water using real-time quantitative PCR: from massive fish mortality to tap drinking water.

Steffi Rocchi , Maxime Tisserant , Benoit Valot , Audrey Laboissière , Victor Frossard et al.
International Journal of Environmental Health Research, 2016, pp.1-10
Article dans une revue hal-01397303 v1

Diversity and complexity of microbial communities from a chlor-alkali tailings dump

Cyril Zappelini , Battle Karimi , Julie Foulon , Laurence Didier Lacercat-Didier , Francois Maillard et al.
Soil Biology and Biochemistry, 2015, 90, pp.101-110. ⟨10.1016/j.soilbio.2015.08.008⟩
Article dans une revue hal-02372435 v1

Microbiological characterization of 3193 French dwellings of Elfe cohort children

S. Rocchi , Gabriel Reboux , V. Frossard , E. Scherer , Benoit Valot et al.
Science of the Total Environment, 2015, 505, pp.1026-1035. ⟨10.1016/j.scitotenv.2014.10.086⟩
Article dans une revue hal-01117795 v1

Caractérisation microbiologique de 3193 logements français des enfants de la cohorte ELFE

Gabriel Reboux , Steffi Rocchi , Victor Frossard , Emeline Scherer , Benoit Valot et al.
Journal of Medical Mycology = Journal de Mycologie Médicale, 2015, 25 (3), pp.228. ⟨10.1016/j.mycmed.2015.06.027⟩
Article dans une revue hal-01211279 v1
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A systems approach to elucidate heterosis of protein abundances in yeast

Melisande Blein-Nicolas , Warren Albertin , Telma da Silva , Benoît Valot , Thierry T. Balliau et al.
Molecular and Cellular Proteomics, 2015, 14 (8), pp.2056-2071. ⟨10.1074/mcp.M115.048058⟩
Article dans une revue hal-02636704 v1

Genomic characterization of EmsB microsatellite loci in Echinococcus multilocularis.

Benoît Valot , Jenny Knapp , Gérald Umhang , Frédéric Grenouillet , Laurence Millon
Infection, Genetics and Evolution, 2015, 32, pp.338-41. ⟨10.1016/j.meegid.2015.03.040⟩
Article dans une revue hal-01166207 v1

What it takes to be a Pseudomonas aeruginosa? The core genome of the opportunistic pathogen updated

Benoît Valot , Christophe Guyeux , Julien y Rolland , Kamel Mazouzi , Xavier Bertrand et al.
PLoS ONE, 2015, 10 (5), pp.e0126468. ⟨10.1371/journal.pone.0126468⟩
Article dans une revue hal-02131118 v1

Microbiological consequences of indoor composting.

A Naegele , G Reboux , M Vacheyrou , B Valot , L Millon et al.
Indoor Air, 2015
Article dans une revue hal-01305451 v1
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Detection of Temporal Clusters of Healthcare-Associated Infections or Colonizations with Pseudomonas aeruginosa in Two Hospitals: Comparison of SaTScan and WHONET Software Packages

Benoit Valot , Christophe Guyeux , Julien Yves Rolland , Kamel Mazouzi , Didier Hocquet et al.
PLoS ONE, 2015, 10 (10), pp.e0139920. ⟨10.1371/journal.pone.0139920⟩
Article dans une revue hal-02552467 v1
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Comparative Genomic Analysis of Two Multidrug-Resistant Clinical Isolates of ST395 Epidemic Strain of Pseudomonas aeruginosa Obtained 12 Years Apart.

Benoit Valot , Laurence Rohmer , Michael A Jacobs , Samuel I Miller , Xavier Bertrand et al.
Genome Announcements, 2014, 2 (3), pp.00515-14. ⟨10.1128/genomeA.00515-14⟩
Article dans une revue hal-01061619 v1
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O-Glycosylation of the N-terminal region of the serine-rich adhesin Srr1 of Streptococcus agalactiae explored by mass spectrometry.

Thibault Chaze , Alain Guillot , Benoît Valot , Olivier Langella , Julia Chamot-Rooke et al.
Molecular and Cellular Proteomics, 2014, 13 (9), pp.2168-82. ⟨10.1074/mcp.M114.038075⟩
Article dans une revue hal-01204448 v1
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Quantitative variations of the mitochondrial proteome and phosphoproteome during fermentative and respiratory growth in $Saccharomyces\ cerevisiae$

Margaux Renvoisé , Ludovic Bonhomme , Marlène Davanture , Benoît Valot , Michel Zivy et al.
Journal of Proteomics, 2014, 106, pp.140-150. ⟨10.1016/j.jprot.2014.04.022⟩
Article dans une revue cea-02462405 v1
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An integrated “omics” approach to the characterization of maize (Zea mays L.) mutants deficient in the expression of two genes encoding cytosolic glutamine synthetase

Nardjis Amiour , Sandrine Imbaud , Gilles Clément , Nicolas Agier , Michel Zivy et al.
BMC Genomics, 2014, 15 (1), pp.1005. ⟨10.1186/1471-2164-15-1005⟩
Article dans une revue hal-01096990 v1
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Bacterial protein signals are associated with Crohn's disease.

Catherine Juste , David P Kreil , Christian Beauvallet , Alain Guillot , Sebastian Vaca et al.
Gut, 2014, 63 (10), pp.1566-1577. ⟨10.1136/gutjnl-2012-303786⟩
Article dans une revue hal-00933734 v1
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Phosphoproteome profiles of the phytopathogenic fungi [i]Alternaria brassicicola[/i] and [i]Botrytis cinerea[/i] during exponential growth in axenic cultures

Marlène Davanture , Jerome Dumur , Nelly Bataillé , Claire Campion , Benoit Valot et al.
Proteomics, 2014, 14 (13-14), pp.1639-1645. ⟨10.1002/pmic.201300541⟩
Article dans une revue (data paper) istex hal-04012727 v1

The membrane proteome of <em>Medicago truncatula</em> roots displays qualitative and quantitative changes in response to arbuscular mycorrhizal symbiosis

Cosette C. Abdallah , Benoît Valot , Christelle Guillier , Arnaud Mounier , Thierry Balliau et al.
Journal of Proteomics, 2014, 108, pp.354-368. ⟨10.1016/j.jprot.2014.05.028⟩
Article dans une revue hal-02633346 v1

Phosphoproteome profiles of the phytopathogenic fungi [i]Alternaria brassicicola[/i] and [i]Botrytis cinerea[/i] during exponential growth in axenic cultures

Marlène Davanture , Jerome Dumur , Nelly Bataillé , Claire Campion , Benoit Valot et al.
Proteomics, 2014, 14 (13-14), pp.1639-1645. ⟨10.1002/pmic.201300541⟩
Article dans une revue (data paper) istex hal-01209998 v1

An extensive proteome map of tomato (Solanum lycopersicum) fruit pericarp

Jiaxin Xu , Laura Pascual-Banuls , Rémy Aurand , Jean-Paul Bouchet , Benoit B. Valot et al.
Proteomics, 2013, 13 (20), pp.3059 - 3063. ⟨10.1002/pmic.201200438⟩
Article dans une revue (data paper) istex hal-02653105 v1

<em>Brachypodium distachyon</em> as a model plant toward improved biofuel crops: search for secreted proteins involved in biogenesis and disassembly of cell wall polymers

Thibaut Douche , Hélène San Clemente , Vincent Burlat , David Roujol , Benoit B. Valot et al.
Proteomics, 2013, 13 (16), pp.2438-2454. ⟨10.1002/pmic.201200507⟩
Article dans une revue istex hal-02647765 v1

Yeast proteome variations reveal different adaptive responses to grape must fermentation

Melisande Blein-Nicolas , Warren Albertin , Benoit B. Valot , Philippe Marullo , Delphine Sicard et al.
Molecular Biology and Evolution, 2013, 30 (6), pp.1368-1383. ⟨10.1093/molbev/mst050⟩
Article dans une revue hal-02648058 v1
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Effect of salinity and calcium on tomato fruit proteome

Arafet Manaa , Mireille Faurobert , Benoit B. Valot , Jean-Paul Bouchet , Dominique Grasselly et al.
OMICS, 2013, 17 (6), 15 p. ⟨10.1089/omi.2012.0108⟩
Article dans une revue hal-02648418 v1

Linking post-translational modifications and variation of phenotypic traits

Warren Albertin , Philippe Marullo , Marina Bely , Michel Aigle , Aurelie Bourgais et al.
Molecular and Cellular Proteomics, 2013, 12 (3), pp.720 - 735. ⟨10.1074/mcp.M112.024349⟩
Article dans une revue hal-01003318 v1

Crop seed oil bodies: from challenges in protein identification to an emerging picture of the oil body proteome

Pascale Jolivet , Francisca Acevedo , Celine Boulard , Sabine d'Andrea , Jean Denis Faure et al.
Proteomics, 2013, 13 (12-13), pp.1836-1849. ⟨10.1002/pmic.201200431⟩
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Crop seed oil bodies: From challenges in protein identification to an emerging picture of the oil body proteome

Sabine D’andrea , Pascale Jolivet , Francisca Acevedo , Céline Boulard , Sabine d'Andréa et al.
Proteomics, 2013, 13 (12-13), pp.1836-1849. ⟨10.1002/pmic.201200431⟩
Article dans une revue istex hal-03659038 v1

Draft Genome Sequence of the Principal Etiological Agent of Farmer's Lung Disease, Saccharopolyspora rectivirgula.

Coralie Barrera , Benoît Valot , Bénédicte Rognon , Christophe Zaugg , Michel Monod et al.
Genome Announcements, 2013, 2 (6), ⟨10.1128/genomeA.01340-14⟩
Article dans une revue hal-01119476 v1

Phosphorylation of p27(KIP1) homologs KRP6 and 7 by SNF1-related protein kinase-1 links plant energy homeostasis and cell proliferation

Thomas Guérinier , Laurine Millan , Pierre Crozet , Celine Oury , Francois Rey et al.
The Plant Journal, 2013, 75 (3), pp.515 - 525. ⟨10.1111/tpj.12218⟩
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Management and dissemination of MS proteomic data with PROTICdb: Example of a quantitative comparison between methods of protein extraction

Olivier Langella , Benoit B. Valot , Daniel Jacob , Thierry T. Balliau , Raphaël-Gauthier Flores et al.
Proteomics, 2013, 13 (9), pp.1457-1466. ⟨10.1002/pmic.201200564⟩
Article dans une revue istex hal-02651260 v1

Cold Stratification and Exogenous Nitrates Entail Similar Functional Proteome Adjustments during Arabidopsis Seed Dormancy Release

Erwann Arc , Kamel Chibani , Philippe Grappin , Marc Jullien , Beatrice Godin-Pérénnez et al.
Journal of Proteome Research, 2012, 11 (11), pp.5418 - 5432. ⟨10.1021/pr3006815⟩
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A method for proteomic analysis of equine subchondral bone and epiphyseal cartilage

Clémence Desjardin , Thierry Balliau , Benoit Valot , Michel Zivy , Laurence Wimel et al.
Proteomics, 2012, 12 (11), pp.1870-1874. ⟨10.1002/pmic.201100366⟩
Article dans une revue istex hal-01019826 v1

Phosphoproteome Dynamics Upon Changes in Plant Water Status Reveal Early Events Associated With Rapid Growth Adjustment in Maize Leaves

Ludovic Bonhomme , Benoit B. Valot , Francois F. Tardieu , Michel M. Zivy
Molecular and Cellular Proteomics, 2012, 11 (10), pp.957-972. ⟨10.1074/mcp.M111.015867⟩
Article dans une revue hal-02651323 v1
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The use of metabolomics integrated with transcriptomic and proteomic studies for identifying key steps involved in the control of nitrogen metabolism in crops such as maize

Nardjis N. Amiour , Sandrine S. Imbaud , Gilles G. Clément , Nicolas N. Agier , Michel M. Zivy et al.
Journal of Experimental Botany, 2012, 63 (14), pp.5017-5033. ⟨10.1093/jxb/ers186⟩
Article dans une revue hal-01000350 v1
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Seed oil bodies from Gevuina avellana and Madia sativa

Francisca F. Acevedo , Monica M. Rubilar , Carolina C. Shene , Patricia P. Navarrete , Fernando F. Romero et al.
Journal of Agricultural and Food Chemistry, 2012, 60 (28), pp.6994-7004. ⟨10.1021/jf301390d⟩
Article dans une revue hal-01000351 v1

A proteomic approach to decipher chilling response from cold acclimation in pea (Pisum sativum L.)

Estelle Dumont , Nasser N. Bahrman , Estelle Goulas , Benoit B. Valot , Hélène Sellier-Richard et al.
Plant Science, 2011, 180 (1), pp.86 - 98. ⟨10.1016/j.plantsci.2010.09.006⟩
Article dans une revue istex hal-02649157 v1

The ZmASR1 Protein Influences Branched-Chain Amino Acid Biosynthesis and Maintains Kernel Yield in Maize under Water-Limited Conditions

Laetitia Virlouvet , Marie-Pierre Jacquemot , Denise Gerentes , Hélène Corti , Sophie Bouton et al.
Plant Physiology, 2011, 157 (2), pp.917-936. ⟨10.1104/pp.111.176818⟩
Article dans une revue hal-03818423 v1
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MassChroQ: A versatile tool for mass spectrometry quantification

Benoit Valot , Olivier Langella , Edlira Nano , Michel Zivy
Proteomics, 2011, 11 (17), pp.3572 - 3577. ⟨10.1002/pmic.201100120⟩
Article dans une revue hal-01481216 v1

Dynamics of post-translational modifications and protein stability in the stroma of Chlamydomonas reinhardtii chloroplasts.

Willy V Bienvenut , Christelle Espagne , Aude Martinez , Wojetec Majeran , Benoît Valot et al.
Proteomics, 2011, 11 (9), pp.1734-50. ⟨10.1002/pmic.201000634⟩
Article dans une revue istex hal-00851379 v1

Oil body proteins sequentially accumulate throughout seed development in Brassica napus

Pascale Jolivet , Céline Boulard , Annick Bellamy , Benoît Valot , Sabine D’andrea et al.
Journal of Plant Physiology, 2011, 168 (17), pp.2015-2020. ⟨10.1016/j.jplph.2011.06.007⟩
Article dans une revue istex hal-03659042 v1
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The ZmASR1 protein influences branched-chain amino acid biosynthesis and maintains kernel yield in maize under water-limited conditions

Laëtitia Virlouvet , Marie Pierre Jacquemot , Denise Gerentes , Helene Corti , Sophie Bouton et al.
Plant Physiology, 2011, 157 (2), pp.917-936. ⟨10.1104/pp.111.176818⟩
Article dans une revue hal-02647863 v1

Oil body proteins sequentially accumulate throughout seed development in Brassica napus

Pascale Jolivet , Celine Boulard , Annick Bellamy , Benoît Valot , Sabine d'Andrea et al.
Journal of Plant Physiology, 2011, 168 (17), pp.2015-2020. ⟨10.1016/j.jplph.2011.06.007⟩
Article dans une revue istex hal-01189576 v1
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Combining various strategies to increase the coverage of the plant cell wall glycoproteome.

Yu Zhang , Aurélie Giboulot , Michel Zivy , Benoît Valot , Elisabeth Jamet et al.
Phytochemistry, 2011, 72 (10), pp.1109-23. ⟨10.1016/j.phytochem.2010.10.019⟩
Article dans une revue hal-00610579 v1
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Salt and genotype impact on plant physiology and root proteome variations in tomato

Arafet Manaa , - Hela Ben Ahmed , Benoit B. Valot , Jean-Paul Bouchet , Samira Aschi-Smiti et al.
Journal of Experimental Botany, 2011, 62 (8), pp.2797-2813. ⟨10.1093/jxb/erq460⟩
Article dans une revue hal-02646770 v1
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Analysis of the xylem sap proteome of Brassica oleracea reveals a high content in secreted proteins.

Laetitia Ligat , Emmanuelle Lauber , Cécile Albenne , Hélène San Clemente , Benoît Valot et al.
Proteomics, 2011, 11 (9), pp.1798-813. ⟨10.1002/pmic.201000781⟩
Article dans une revue hal-00610601 v1

Identification of in planta-expressed arbuscular mycorrhizal fungal proteins upon comparison of the root proteomes of Medicago truncatula colonised with two Glomus species

Ghislaine G. Recorbet , Benoit B. Valot , Franck F. Robert , Vivienne V. Gianinazzi-Pearson , Eliane E. Dumas-Gaudot
Fungal Genetics and Biology, 2010, 47 (7), pp.608-618. ⟨10.1016/j.fgb.2010.03.003⟩
Article dans une revue istex hal-02664836 v1

Proteomic analysis of Medicago truncatula root plastids

Zeina Daher , Ghislaine G. Recorbet , Benoit B. Valot , Franck F. Robert , Thierry T. Balliau
Proteomics, 2010, 10 (11), pp.2123-2137. ⟨10.1002/pmic.200900345⟩
Article dans une revue istex hal-02657703 v1
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The Arabidopsis ABA-Activated Kinase OST1 Phosphorylates the bZIP Transcription Factor ABF3 and Creates a 14-3-3 Binding Site Involved in Its Turnover

Caroline Sirichandra , Marlène M. Davanture , Benjamin E. Turk , Michel M. Zivy , Benoit B. Valot et al.
PLoS ONE, 2010, 5 (11), ⟨10.1371/journal.pone.0013935⟩
Article dans une revue hal-02668895 v1

Protective proteins are differentially expressed in tomato genotypes differing for their tolerance to low-temperature storage

David Page , Barbara Gouble , Benoit B. Valot , Jean-Paul Bouchet , Caroline Callot et al.
Planta, 2010, 232 (2), pp.483-500. ⟨10.1007/s00425-010-1184-z⟩
Article dans une revue istex hal-02662653 v1

On the mechanisms of cadmium stress alleviation in Medicago truncatula by arbuscular mycorrhizal symbiosis: A root proteomic study

Achref A. Aloui , Ghislaine G. Recorbet , Armelle Gollotte , Franck F. Robert , Benoit B. Valot et al.
Proteomics, 2009, 9 (2), pp.420-433. ⟨10.1002/pmic.200800336⟩
Article dans une revue hal-02665088 v1

Cotranslational proteolysis dominates glutathione homeostasis to support proper growth and development.

Frédéric Frottin , Christelle Espagne , José A Traverso , Caroline Mauve , Benoît Valot et al.
The Plant cell, 2009, 21 (10), pp.3296-314. ⟨10.1105/tpc.109.069757⟩
Article dans une revue hal-00853794 v1

Extent of N-terminal modifications in cytosolic proteins from eukaryotes.

Aude Martinez , José A Traverso , Benoît Valot , Myriam Ferro , Christelle Espagne et al.
Proteomics, 2008, 8 (14), pp.2809-31. ⟨10.1002/pmic.200701191⟩
Article dans une revue istex hal-00853807 v1

Alternative and effective proteomic analysis in Arabidopsis.

Christelle Espagne , Aude Martinez , Benoît Valot , Thierry Meinnel , Carmela Giglione
Proteomics, 2007, 7 (20), pp.3788-99. ⟨10.1002/pmic.200700346⟩
Article dans une revue istex hal-00187943 v1

Two cytosolic glutamine synthetase isoforms of maize are specifically involved in the control of grain production.

Antoine Martin , Judy Lee , Thomas Kichey , Denise Gerentes , Michel Zivy et al.
The Plant cell, 2006, 18 (11), pp.3252-74. ⟨10.1105/tpc.106.042689⟩
Article dans une revue hal-01927336 v1

Identification of Membrane-Associated Proteins Regulated by the Arbuscular Mycorrhizal Symbiosis

Benoît Valot , Marc Dieu , Ghislaine Recorbet , Martine Raes , Silvio Gianinazzi et al.
Plant Molecular Biology, 2005, 59 (4), pp.565-580. ⟨10.1007/s11103-005-8269-2⟩
Article dans une revue hal-03744681 v1

Proteomics as a way to identify extra-radicular fungal proteins from Glomus intraradices - RiT-DNA carrot root mycorrhizas

Eliane Dumas-Gaudot , Benoît Valot , G. Bestel-Corre , Ghislaine Recorbet , M. St-Arnaud et al.
FEMS Microbiology Ecology, 2004, 48, pp.401-411
Article dans une revue hal-02671977 v1

A technical trick for studying proteomics in parallel to transcriptomics in symbiotic root-fungus interactions

Eliane Dumas-Gaudot , Nardjis Amiour , Stephanie Weidmann , G. Bestel-Corre , Benoît Valot et al.
Proteomics, 2004, 4, pp.451-453
Article dans une revue hal-02675283 v1

Sub-cellular proteomic analysis of a Medicago truncatula root microsomal fraction

Benoît Valot , Silvio Gianinazzi , Eliane Dumas-Gaudot
Phytochemistry, 2004, 65, pp.1721-1732
Article dans une revue hal-02671433 v1

Functional Genomic of Arbuscular Mycorrhizal Symbiosis: Why and How Using Proteomics

Eliane Dumas-Gaudot , Ghislaine Recorbet , Franck Robert , Benoit Valot , Nardjis Amiour
Symbiotic Fungi, 18, Springer Berlin Heidelberg, pp.243-274, 2009, Soil Biology, ⟨10.1007/978-3-540-95894-9_15⟩
Chapitre d'ouvrage hal-03745563 v1

Plasma membrane in arbuscular mycorrhiza

Ghislaine G. Recorbet , Benoit Valot , Eliane Dumas Gaudot
Benoît Schoefs. Plant Cell Compartments - Selected Topics, Research Signpost, 2008, ISBN 978-81-308-0104-9
Chapitre d'ouvrage hal-03745603 v1

Proteomics of different tissues

Satish Nagaraj , Zhentian Lei , Bonnie Watson , Lloyd Sumner , Karine Gallardo et al.
Medicago truncatula handbook, The Samuel Roberts Noble Foundation, 2006, 0-9754303-1-9
Chapitre d'ouvrage hal-02820000 v1

Impact des huiles essentielles sur la résistance aux antibiotiques – l’exemple du cinnamaldéhyde

Alexandre Tetard , Susie Gaillot , Benoît Valot , Patrick Plésiat , Catherine Llanes
Réunion annuelle du GRD CNRS Pseudomonas, Sep 2019, Voiron, France
Communication dans un congrès hal-03527391 v1

Reconstruction de la végétation actuelle et passée d’un méandre du Doubs à l’aide de marqueurs carpologiques, palynologiques et génétiques

Caroline Schaal , Jehanne Oudot-Canaff , Quentin Cuenot , Carole Bégeot , Benoit Valot et al.
13èmes rencontres d'archeobotanique, Feb 2018, Station biologique de Besse (Auvergne), France
Communication dans un congrès hal-02372696 v1

Large-scale demonstration of increased production of poplar biomass by mycorrhizal inoculation at metal-contaminated phytomanagement sites, and investigation of associated fungal communities

Damien Blaudez , Lisa Ciadamidaro , Julie Foulon , Cyril Zappelini , Alexis Durand et al.
9th International Conference on Mycorrhiza, Jul 2017, Prague, Czech Republic
Communication dans un congrès hal-03189719 v1

Biomass, mineralomass and microbial communities at poplar phytomanagement sites: a ten-year study

Michel Chalot , Olivier Girardclos , Loïc Yung , Cyril Zappelini , Benoit B. Valot et al.
14th International Conference on the Biogeochemistry of Trace Elements (ICOBTE), Jul 2017, Zurich, Switzerland
Communication dans un congrès hal-03189722 v1

Environmental metabarcoding as a relevant tool to reveal structure and composition of microbial communities at phytomanagement sites

Michel Chalot , Julie Foulon , Cyril Zappelini , Alexis Durand , Benoit B. Valot et al.
14th International Conference on Sustainable Use and Management of Soil, Sediment and Water Resources (AQUACONSOIL), Jun 2017, Lyon, France
Communication dans un congrès hal-03189726 v1

Environmental metabarcoding as a tool to reveal structure and composition of microbial communities in anthropogenic soils

Julie Foulon , Cyril Zappelini , Alexis Durand , Benoit Valot , Mathieu Luglia et al.
4ème colloque de Génomique Environnementale, Sep 2017, Marseille, France
Communication dans un congrès hal-01766402 v1

Microbial communities from poplar at a Hg phytomanagement site

A. Durand , François Maillard , Benoit Valot , Hyun S. Gweon , Michel Chalot
14th International Conference on the Biogeochemistry of Trace Elements (ICOBTE), Jul 2017, Zurich, Switzerland
Communication dans un congrès hal-03528780 v1

Natural recolonization of tailings dumps by trees and microbes: a case study

Cyril Zappelini , Mohamad Assad , Nicolas Capelli , Fabienne Tatin-Froux , Julien Parelle et al.
14th International Conference on the Biogeochemistry of Trace Elements (ICOBTE), Jul 2017, Zurich, Switzerland
Communication dans un congrès hal-03189725 v1

New approaches to description and modeling of trophic interactions: reliable allies to study trophically-transmitted parasites?

Francis Raoul , Antoine Perasso , Virgile Baudrot , Benoit Valot , Eve Afonso et al.
Research and methods in ecohealth and conservation, GDRI Ecosystem Health and Environmental Disease Ecology, Nov 2016, Kunming, China
Communication dans un congrès hal-01367367 v1

Methods in genetics to investigate E. multilocularis transmission patterns

Jenny Knapp , Umhang Gérald , Benoit Valot , Francis Raoul , Sylvie Damy et al.
Research and methods in ecohealth and conservation, GDRI Ecosystem Health and Environmental Disease Ecology, Nov 2016, Kunming, China
Communication dans un congrès hal-01367365 v1

Phytomanagement of contaminated lands: considerations from above-and below-ground

Michel Chalot , Julie Foulon , Cyril Zappelini , Battle Karimi , Benoit Valot et al.
13th International Conference on the Biogeochemistry of Trace Elements (ICOBTE), Jul 2015, Fukuoka, Japan
Communication dans un congrès hal-04263801 v1

Protéome membranaire en réponse à la symbiose mycorhizienne à arbuscules par GeLC-MS/MS

Cosette C. Abdallah , Jenny Renaut , Benoît Valot , Michel Zivy , Ghislaine Recorbet et al.
3. Journées Francophones Mycorhizes, Sep 2012, Nancy, France
Communication dans un congrès hal-02750064 v1

Fermentation rate, population size, CO2 flux and quantitative proteomics: a multi-level approach applied to alcoholic fermentation in Saccharomyces cerevisiae

Warren Albertin , Philippe Marullo , Michel Aigle , Aurélie Bourgais , Olivier Langella et al.
Oeno 2011. 9è Symposium International d'Oenologie de Bordeaux, Jun 2011, Bordeaux, France. 1186 p
Communication dans un congrès hal-01204311 v1

Analyse phosphoprotéomique des voies de réponse au fludioxonil des champignons filamenteux Alternaria brassicicola et Botrytis cinerea

Jérôme Dumur , Marlène M. Davanture , Benoît Valot , Claire Campion , Nelly Bataille-Simoneau et al.
Journées des Microbiologistes de l'INRA, 2012, L'Isle sur la Sorgue, France
Communication dans un congrès hal-03281861 v1
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Label-free 1-DE-LC-MS/MS to identify arbuscular mycorrhiza related membrane proteins

Cosette C. Abdallah , Jenny Renaut , Benoît Valot , Michel Zivy , Ghislaine Recorbet et al.
3. Annual Joint Meeting on Plant Microbe Interactions, Conseil Régional de Bourgogne. FRA., Sep 2012, Dijon, France. 13 p
Communication dans un congrès hal-02744745 v1

Label-free 1-DE-LC-MS/MS and iTRAQ-OFFGEL-LC-MS/MS to identify arbuscular mycorrhiza-related membrane proteins.

Cosette Abdallah , Eliane Dumas Gaudot , Christelle Guillier , Ghislaine G. Recorbet , Daniel D. Wipf et al.
Final Cost meeting FA0603. “Plant Proteomics in Europe: where do we stand and where are we heading to?, May 2011, Dijon, France
Communication dans un congrès hal-03746442 v1
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Phosphoproteomics to trace signal transduction

Marlène M. Davanture , Benoit B. Valot , Michel M. Zivy , Sabine, Helma S. H. Fillinger-David
BSPGW 2011 : Botrytis -Sclerotinia Post-Genome Workshop, Sep 2011, Lyon, France. pp.10
Communication dans un congrès hal-01000564 v1

The fluioxonil induced phosphoproteomes of the phytopathogenic fungi Alternaria brassicicola and Botrytis cinerea

Marlène M. Davanture , Benoit B. Valot , Claire C. Campion , Jerome J. Dumur , Nelly N. Bataillé et al.
26. Fungal Genetics Conference at Silomar, Mar 2011, Asilomar, United States. pp.110
Communication dans un congrès hal-01000456 v1

The fludioxonil induced phosphoproteomes of the phytopathogenic fungi Alternaria brassicicola and Botrytis cinerea

Marlène M. Davanture , Benoît Valot , Claire Campion , Jérôme Dumur , Nelly Bataille-Simoneau et al.
26th Fungal Genetics Conference, 2011, Asilomar, États-Unis
Communication dans un congrès hal-03281864 v1
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PROTIC workshop: A bioinformatics environment for proteome data validation, analysis and integration

Renaud Flores , Johann J. Joets , Olivier Langella , Benoit B. Valot , Michel M. Zivy et al.
Plant Genomics seminar 2010, Mar 2010, Pont Royal en Provence, France
Communication dans un congrès hal-02758409 v1

Subcellular proteomics sheds light on root plastid involvement in Medicago truncatula arbuscular mycorrhizal symbiosis

Zeina Daher , Ghislaine Recorbet , Achref Aloui , Benoit Valot , Thierry Balliau et al.
Congrès SMAP (Spectrométrie de masse et analyse protéomique), Sep 2009, Dijon, France
Communication dans un congrès hal-03746862 v1

Proteomes of arbuscular mycorrhizal symbiosis : past and present achievements

Eliane Dumas-Gaudot , Ghislaine Recorbet , Franck Robert , Nardjis Amiour , Pierre Offre et al.
Proteomlux 2008 : Proteomics in Plants, Microorganisms and Environment, 2008, Luxembourg, Luxembourg
Communication dans un congrès hal-03746917 v1

Proteomics to characterize the effect of a tomato genomic region on the fruit sensitivity to cold storage

David Page , Barbara Gouble , Caroline Callot , Andre Kretzschmar , Benoit B. Valot et al.
Proteomlux 2008, Proteomics in plants, microorganisms and environment, Oct 2008, Luxembourg, Luxembourg
Communication dans un congrès hal-02756755 v1

The arbuscular mycorrhizal symbiosis a modulator of cadmium stress

Eliane E. Dumas-Gaudot , Achref A. Aloui , Franck F. Robert , Benoit B. Valot , Celine C. Henry et al.
II WG 2 MEETING "Will plant proteomics research help in facing food, health and environmental concern?, Feb 2008, Cordoba, Spain
Communication dans un congrès hal-02752183 v1

Contribution of proteomics to arbuscular mycorrhiza in Medicago truncatula

Benoit B. Valot , Franck F. Robert , Nardjis N. Amiour , Ghislaine G. Recorbet , Eliane E. Dumas-Gaudot
Model Legumes Congress (MLC2007), Mar 2007, Tunis, Tunisia
Communication dans un congrès hal-02756740 v1

Arbuscular mycorhizal proteomes: what news at the nearby and distant horizon?

Benoit B. Valot , Nardjis N. Amiour , Zeina Daher , Franck F. Robert , Ghislaine G. Recorbet et al.
XIII International Congress on Molecular Plant-Microbe Interactions, Jul 2007, Sorrento, Italy
Communication dans un congrès hal-02753337 v1

Could subcellular proteomics of root plastids teach us more about mycorrhizal symbiosis?

Zeina Daher , Thomas Fester , Benoit B. Valot , Dominique Morandi , Benoît Schoefs et al.
XIII International Congress on Molecular Plant-Microbe Interactions, Jul 2007, Sorrento, Italy
Communication dans un congrès hal-02754543 v1

Protein profiling analyses in arbuscular mycorrhizal symbiosis

Ghislaine Recorbet , Nardjis Amiour , Benoit Valot , Gwenaelle Bestel-Corre , Franck Robert et al.
5th International Conference on Mycorrhiza (ICOM5), Jul 2006, Granada, Spain
Communication dans un congrès hal-03746947 v1

Membrane proteomic analyses to reveal and identify arbuscular mycorrhizal-related proteins

Benoit Valot , Marc Dieu , Luc Negroni , Ghislaine Recorbet , Martine Raes et al.
COST Action 8.38 Management Committee and Final meeting on "Achievement and Future Landscape for Arbuscular Mycorrhiza Research, Jun 2005, Dijon, France
Communication dans un congrès hal-03747131 v1

Membrane proteomic of arbuscular mycorrhiza

Benoit Valot , Marc Dieu , Luc Negroni , Ghislaine Recorbet , Martine Raes et al.
HUPO Congress, Aug 2005, Munich, Germany
Communication dans un congrès hal-03747132 v1

Proteomics: a functional genomic approach for studying mycorrhizal interactions in legumes

Eliane Dumas-Gaudot , Benoit Valot , Ghislaine Recorbet , Nardjis Amiour , Gwenaelle Bestel-Corre et al.
Fifth European Conference on Grain Legumes - Legumes for the benefit of agriculture nutrition and the environment: their genomics, their products, and their improvement, Jun 2004, Dijon, France
Communication dans un congrès hal-03747144 v1
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Phylogenetic and resistome analysis of epidemic multidrug-resistant Acinetobacter baumannii clone

Agnese Lupo , Benoit Valot , Antoine Drapeau , Estelle Saras , Bour Maxime et al.
FEMS Conference on Microbiology, Jun 2022, Belgrade, Serbia
Poster de conférence anses-04542385 v1

Intra-patient evolution of a pulmonary strain of Pseudomonas aeruginosa from primo-colonisation to lung transplant

Susie Gaillot , Catherine Llanes , Benoit Valot , Salomé Kiener , Patrick Plesiat
European Young Investigators Meeting (EYIM). 44th European Cystic Fibrosis Society (ECFS) Conferences, Dec 2021, Digital, France
Poster de conférence hal-03527024 v1

Association antibiotique – extraits d’huiles essentielles : effets antagonistes chez Pseudomonas aeruginosa

Alexandre Tetard , Susie Gaillot , Benoit Valot , Patrick Plésiat , Catherine Llanes
15ème congrès national de la Société Française de Microbiologie, Oct 2019, Paris, France
Poster de conférence hal-03527394 v1

Large-scale plantations of poplar at metal-contaminated phytomanagement sites: investigation of associated fungal communities

Damien Blaudez , Julie Foulon , Cyril Zappelini , Alexis Durand , Lisa Ciadamidaro et al.
9th International Conference on Mycorrhiza, Jul 2017, Prague, Czech Republic
Poster de conférence hal-03189704 v1

Environmental metabarcoding reveals contrasting microbial communities at two poplar phytomanagement sites

Michel Chalot , Julie Foulon , Cyril Zappelini , Alexis Durand , Benoït Valot et al.
18th International Conference on Heavy Metals in the Environment, Sep 2016, Gand, Belgium
Poster de conférence hal-03214531 v1
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La microdissection laser : une technique d’analyse du profil d’expression génique et protéique des types cellulaires spécifiques de la symbiose mycorhizienne à arbuscules

Christine Arnould , Sally Koegel , Lucie Geay , Michael Kälin , Benoît Valot et al.
5. Journées Scientifiques et Techniques du Réseau des Microscopistes INRA, Nov 2014, Dijon, France. 2014
Poster de conférence hal-02741805 v1

Impact of phytomanagement practices on microbial communities as revealed by next-generation sequencing technology

Julie Foulon , Cyril Zappelini , Battle Karimi , Benoit Valot , Damien Blaudez et al.
First Global Soil Biodiversity Conference, Dec 2014, Dijon, France
Poster de conférence hal-04263736 v1
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Exploring genetic diversity in tomato fruit with a systems biology approach

Laura Pascual , Jiaxin Xu , Nelly Desplat , Benoit B. Valot , Jean-Paul Bouchet et al.
21. International Plant and Animal Genome, Jan 2013, San Diego, United States. 2013
Poster de conférence hal-02745690 v1

Label-free 1-DE-LC-MS/MS to identify arbuscular mycorrhiza-related membrane proteins

Cosette C. Abdallah , Jenny Renaut , Benoît Valot , Michel Zivy , Ghislaine Recorbet et al.
3. Annual Joint Meeting on Plant Microbe Interactions, Sep 2012, Dijon, France. , 15 p., 2012, Abstract of the third annual joint meetong on plant microbe interactions
Poster de conférence hal-02747762 v1

A Medicago truncatula root plasma membrane enriched fraction as a prerequisite for label free quantitative analysis of plasmalemma protein changes upon arbuscular mycorrhizal symbiosis

Achref Aloui , Christelle Guillier , Ghislaine G. Recorbet , Benoit Valot , Daniel Wipf et al.
Final Cost meeting FA0603. “Plant Proteomics in Europe: where do we stand and where are we heading to?, May 2011, Dijon, France
Poster de conférence hal-03746502 v1
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MassChroQ : A versatile tool for mass spectrometry quantification

Edlira Nano , Benoit Valot , Olivier Langella , Ludovic Bonhomme , Mélisande Blein et al.
Final COST meeting : Plant Proteomics in Europe, 2011, May 2011, Dijon, France
Poster de conférence hal-03663220 v1

Mycorrhization-induced changes in the root plastid proteome of Medicago truncatula

Zeina Daher , Ghislaine G. Recorbet , Thierry Balliau , Benoit Valot , Michel Zivy et al.
Final Cost meeting FA0603. “Plant Proteomics in Europe: where do we stand and where are we heading to?, May 2011, Dijon, France
Poster de conférence hal-03746485 v1

Technical improvements for analysis of récalcitrant proteins by LC-MS

Cosette Abdallah , Eliane Dumas Gaudot , Ghislaine Recorbet , Christelle Guillier , Daniel Wipf et al.
ProteomLux 2010. "International Conference on Proteomics in Plants, Microorganisms and Environment, Oct 2010, Luxembourg, Luxembourg
Poster de conférence hal-03746595 v1

Vers l'étude quantitative et fonctionnelle des protéomes membranaires des racines mis en jeu au cours de la symbiose mycorhizienne à arbuscules de Medicago truncatula

Cosette Abdallah , Christelle Guillier , Ghislaine Recorbet , Eliane Dumas-Gaudot , Daniel Wipf et al.
2ièmes Journées Francophones Mycorhizes, Sep 2010, Bruxelles, Belgique
Poster de conférence hal-03746586 v1

Functional analysis of the membrane proteome of Medicago truncatula roots upon colonization by the arbuscular mycorrhizal fungus Glomus irregulare

Christelle Guillier , Cosette Abdallah , Philippe Hammann , Benoit Valot , Jenny Renaut et al.
ProteomLux 2010. "International Conference on Proteomics in Plants, Microorganisms and Environment", Oct 2010, Luxembourg, Luxembourg
Poster de conférence hal-03746655 v1

Label-free quantitation of proteins involved in milk fat globule secretion from the mammary epithelial cell.

Christelle C. Cebo , C. Henry , Christelle Lopez , Benoît Valot , M. Zivy et al.
Congrès Spectrométrie de Masse & Analyse Protéomique SMAP, Sep 2009, Dijon, pp.Inconnu, 2009
Poster de conférence hal-02815016 v1

Studying the arbuscular mycorrhizal symbiosis from axenic system to soilborne interactions by proteomics: which challenges to face?

Eliane Dumas-Gaudot , Ghislaine Recorbet , Franck Robert , Nardjis Amiour , Pierre Offre et al.
Congrès SMAP (Spectrométrie de masse et analyse protéomique), Sep 2009, Dijon, France
Poster de conférence hal-03746880 v1

Cellular and subcellular studies of the arbuscular mycorrhizal symbiosis in M. truncatula: a proteomic survey

Zeina Daher , Ghislaine G. Recorbet , Franck Robert , Benoit Valot , Thierry Balliau et al.
6th International Conference on Mycorrhiza (ICOM6), Aug 2009, Belo Horizonte, Brazil
Poster de conférence hal-03746877 v1

Membrane proteomics of arbuscular mycorrhiza

Benoit Valot , Odile Thiery , Achref Aloui , Ghislaine Recorbet , Marc Dieu et al.
Mycorrhiza for science and society-5th International Conference on Mycorrhiza (ICOM5), Jul 2006, Granada, Spain
Poster de conférence hal-03746943 v1

Plant mycorrhizal interaction: What can we learn from a proteomic approach?

Eliane Dumas-Gaudot , Benoit Valot , Ghislaine Recorbet , Nardjis Amiour , Gwenaelle Bestel-Corre
COST Action 8.49 "Parasitic Plant Management in sustainable Agriculture", Oct 2004, Wageningen, Netherlands
Poster de conférence hal-03747148 v1