Olivier Bernard

Publications

Article dans une revue (59)

Fusing Echocardiography Images and Medical Records for Continuous Patient Stratification Nathan Painchaud,Jérémie Stym-Popper,Pierre-Yves Courand,Nicolas Thome,Pierre-Marc Jodoinet al. IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control, 2025, 72 (10), pp.1388-1400. ⟨10.1109/TUFFC.2025.3600902⟩ Article dans une revue hal-05225957v1
Medical Image Analysis – Special Issue FIMH 2023 Patrick Clarysse,Nicolas Duchateau,Olivier Bernard,Jacques Ohayon,Magalie Viallon Medical Image Analysis, 2025, 103, pp.103612. ⟨10.1016/j.media.2025.103612⟩ Article dans une revue hal-05045829v1
Physics-Guided Neural Networks for Intraventricular Vector Flow Mapping Hang Jung Ling,Salomé Bru,Julia Puig,Florian Vixège,Simon Mendezet al. IEEE Transactions on Ultrasonics, Ferroelectrics and Frequency Control, 2024, 71 (11), pp.1377 - 1388. ⟨10.1109/TUFFC.2024.3411718⟩ Article dans une revue hal-04627945v1
Ultrafast Cardiac Imaging Using Deep Learning For Speckle-Tracking Echocardiography Jingfeng Lu,Fabien Millioz,François Varray,Jonathan Porée,Jean Provostet al. IEEE Transactions on Ultrasonics, Ferroelectrics and Frequency Control, 2023, 70 (12), pp.1761-1772. ⟨10.1109/TUFFC.2023.3326377⟩ Article dans une revue hal-04253241v1
Phase Unwrapping of Color Doppler Echocardiography using Deep Learning Hang Jung Ling,Olivier Bernard,Nicolas Ducros,Damien Garcia IEEE Transactions on Ultrasonics, Ferroelectrics and Frequency Control, 2023, 70 (8), pp.810-820. ⟨10.1109/TUFFC.2023.3289621⟩ Article dans une revue hal-04142824v2
Echocardiography Segmentation with Enforced Temporal Consistency Nathan Painchaud,Nicolas Duchateau,Olivier Bernard,Pierre-Marc Jodoin IEEE Transactions on Medical Imaging, 2022, 41 (10), pp.2867-2878. ⟨10.1109/TMI.2022.3173669⟩ Article dans une revue hal-03672999v1
Deep Learning vs manual techniques for assessing left ventricular ejection fraction in 2D echocardiography: validation against CMR Eric Saloux,Alexandre Popoff,Hélène Langet,Paolo Piro,Camille Ropertet al. Medrxiv : the Preprint Server For Health Sciences, 2022 Article dans une revue hal-04215858v1
A pipeline for the generation of synthetic cardiac color Doppler Yunyun Sun,Florian Vixege,Faraz Khuram,Simon Mendez,Franck Nicoudet al. IEEE Transactions on Ultrasonics, Ferroelectrics and Frequency Control, 2022, 69 (3), pp.932-941. ⟨10.1109/TUFFC.2021.3136620⟩ Article dans une revue hal-03538666v1
Motion estimation by deep learning in 2D echocardiography: synthetic dataset and validation Ewan Evain,Yunyun Sun,Khuram Faraz,Damien Garcia,Eric Salouxet al. IEEE Transactions on Medical Imaging, 2022, 41 (8), pp.1911-1924. ⟨10.1109/TMI.2022.3151606⟩ Article dans une revue hal-03603014v1
CMRSegTools: An open-source software enabling reproducible research in segmentation of acute myocardial infarct in CMR images William Romero R.,Magalie Viallon,Joël Spaltenstein,Lorena Petrusca,Olivier Bernardet al. PLoS ONE, 2022, 17 (9), pp.e0274491. ⟨10.1371/journal.pone.0274491⟩ Article dans une revue hal-04215855v1
Physics-constrained intraventricular vector flow mapping by color Doppler Florian Vixège,Alain Berod,Yunyun Sun,Simon Mendez,Olivier Bernardet al. Physics in Medicine and Biology, 2021, 66 (24), pp.245019. ⟨10.1088/1361-6560/ac3ffe⟩ Article dans une revue hal-03538679v1
A Pilot Study on Convolutional Neural Networks for Motion Estimation From Ultrasound Images Ewan Evain,Faraz Khuram,Thomas Grenier,Damien Garcia,Mathieu de Craeneet al. IEEE Transactions on Ultrasonics, Ferroelectrics and Frequency Control, 2020, 67 (12), pp.2565-2573. ⟨10.1109/TUFFC.2020.2976809⟩ Article dans une revue hal-03027193v1
Real-Time Automatic Ejection Fraction and Foreshortening Detection Using Deep Learning Erik Smistad,Andreas Ostvik,Ivar Mjaland Salte,Daniela Melichova,Thuy Mi Nguyenet al. IEEE Transactions on Ultrasonics, Ferroelectrics and Frequency Control, 2020, 67 (12), pp.2595-2604. ⟨10.1109/TUFFC.2020.2981037⟩ Article dans une revue hal-03149349v1
Proposed Requirements for Cardiovascular Imaging Related Machine Learning Evaluation (PRIME) Checklist Partho Sengupta,Sirish Shrestha,Béatrice Berthon,Emmanuel Messas,Erwan Donalet al. JACC: Cardiovascular Imaging, 2020, 13, pp.2017-35 Article dans une revue hal-03019705v1
Cardiac Segmentation With Strong Anatomical Guarantees Nathan Painchaud,Youssef Skandarani,Thierry Judge,Olivier Bernard,Alain Lalandeet al. IEEE Transactions on Medical Imaging, 2020, 39 (11), pp.3703-3713. ⟨10.1109/TMI.2020.3003240⟩ Article dans une revue hal-03119215v1
LU-Net: A Multistage Attention Network to Improve the Robustness of Segmentation of Left Ventricular Structures in 2-D Echocardiography Sarah Leclerc,Erik Smistad,Andreas Ostvik,Frédéric Cervenansky,Florian Espinosaet al. IEEE Transactions on Ultrasonics, Ferroelectrics and Frequency Control, 2020, 67 (12), pp.2519-2530. ⟨10.1109/TUFFC.2020.3003403⟩ Article dans une revue hal-03149347v1
A Pilot Study on Convolutional Neural Networks for Motion Estimation From Ultrasound Images Ewan Evain,Khuram Faraz,Thomas Grenier,Damien Garcia,Mathieu de Craeneet al. IEEE Transactions on Ultrasonics, Ferroelectrics and Frequency Control, 2020, 67 (12), pp.2565-2573. ⟨10.1109/TUFFC.2020.2976809⟩ Article dans une revue hal-04842580v1
Deep Learning for Segmentation using an Open Large-Scale Dataset in 2D Echocardiography Sarah Leclerc,Erik Smistad,Joao Pedrosa,Andreas Ostvik,Fréderic Cervenanskyet al. IEEE Transactions on Medical Imaging, 2019, 38 (9), pp.2198-2210. ⟨10.1109/TMI.2019.2900516⟩ Article dans une revue hal-02054458v1
A Framework for the Generation of Realistic Synthetic Cardiac Ultrasound and Magnetic Resonance Imaging Sequences from the same Virtual Patients Yitian Zhou,Sophie Giffard-Roisin,Mathieu de Craene,Sorina Camarasu-Pop,Jan d'Hoogeet al. IEEE Transactions on Medical Imaging, 2018, 37 (3), pp.741-754. ⟨10.1109/TMI.2017.2708159⟩ Article dans une revue hal-01533366v1
Deep Learning Techniques for Automatic MRI Cardiac Multi-structures Segmentation and Diagnosis: Is the Problem Solved? Olivier Bernard,Alain Lalande,Clement Zotti,Frederic Cervenansky,Xin Yanget al. IEEE Transactions on Medical Imaging, 2018, 37 (11), pp.2514-2525. ⟨10.1109/TMI.2018.2837502⟩ Article dans une revue hal-01803621v1
Realistic Vendor-Specific Synthetic Ultrasound Data for Quality Assurance of 2-D Speckle Tracking Echocardiography: Simulation Pipeline and Open Access Database Martino Alessandrini,Bidisha Chakraborty,Brecht Heyde,Olivier Bernard,Mathieu de Craeneet al. IEEE Transactions on Ultrasonics, Ferroelectrics and Frequency Control, 2018, 65 (3), pp.411-422. ⟨10.1109/TUFFC.2017.2786300⟩ Article dans une revue hal-02059841v1
Standardized Delineation of Endocardial Boundaries in Three-Dimensional Left Ventricular Echocardiograms Alexandros Papachristidis,Elena Galli,Marcel L. Geleijnse,Brecht Heyde,Martino Alessandriniet al. Journal of The American Society of Echocardiography, 2017, 30 (11), pp.1059-1069. ⟨10.1016/j.echo.2017.06.027⟩ Article dans une revue hal-01596115v1
Fast and Fully Automatic Left Ventricular Segmentation and Tracking in Echocardiography Using Shape-Based B-Spline Explicit Active Surfaces Joao Pedrosa,Sandro Queirós,Olivier Bernard,Jan Engvall,Thor Edvardsenet al. IEEE Transactions on Medical Imaging, 2017, 36 (11), pp.2287-2296. ⟨10.1109/TMI.2017.2734959⟩ Article dans une revue hal-01596083v1
heartBEATS: A hybrid energy approach for real-time B-spline explicit active tracking of surfaces Daniel Barbosa,João Pedrosa,Brecht Heyde,Thomas Dietenbeck,Denis Fribouletet al. Computerized Medical Imaging and Graphics, 2017, 62, pp.26-33. ⟨10.1016/j.compmedimag.2017.07.004⟩ Article dans une revue istex hal-01571705v1
Local Orientation Imaging for Tissue Structure Using Ultrasound Imaging Emeline Turquin,Lorena Petrusca,Olivier Bernard,Magalie Viallon,Hervé Liebgottet al. Innovation and Research in BioMedical engineering, 2017, 38 (5), pp.298 - 303. ⟨10.1016/j.irbm.2017.08.002⟩ Article dans une revue hal-01596136v1
Detailed Evaluation of Five 3D Speckle Tracking Algorithms Using Synthetic Echocardiographic Recordings Martino Alessandrini,Brecht Heyde,Sandro Queirós,Szymon Cygan,Maria Zontaket al. IEEE Transactions on Medical Imaging, 2016, 35 (8), pp.1915-1926. ⟨10.1109/TMI.2016.2537848⟩ Article dans une revue hal-01373083v1
Left-Atrial Segmentation From 3-D Ultrasound Using B-Spline Explicit Active Surfaces With Scale Uncoupling N. Almeida,Denis Friboulet,S.I. Sarvari,Olivier Bernard,D. Barbosaet al. IEEE Transactions on Ultrasonics, Ferroelectrics and Frequency Control, 2016, 63 (2), pp.212 - 221. ⟨10.1109/TUFFC.2015.2507638⟩ Article dans une revue hal-01272366v1
Compressed sensing Doppler ultrasound reconstruction using block sparse Bayesian learning Oana Lorintiu,Hervé Liebgott,Olivier Bernard,Denis Friboulet IEEE Transactions on Medical Imaging, 2016, 35, pp.978-987. ⟨10.1109/TMI.2015.2504240⟩ Article dans une revue hal-01274672v1
Hybrid Strategy to Simulate 3-D Nonlinear Radio-Frequency Ultrasound Using a Variant Spatial PSF François Varray,Olivier Bernard,Sonia Assou,Christian Cachard,Didier Vray IEEE Transactions on Ultrasonics, Ferroelectrics and Frequency Control, 2016, 63 (9), pp.1390 - 1398. ⟨10.1109/TUFFC.2016.2579666⟩ Article dans une revue hal-01373125v1
A Sparse Reconstruction Framework for Fourier-Based Plane-Wave Imaging Adrien Besson,Miaomiao Zhang,Francois Varray,Hervé Liebgott,Denis Fribouletet al. IEEE Transactions on Ultrasonics, Ferroelectrics and Frequency Control, 2016, 63 (12), pp.2092 - 2106. ⟨10.1109/TUFFC.2016.2614996⟩ Article dans une revue hal-01433056v1
Extension of Fourier-Based Techniques for Ultrafast Imaging in Ultrasound With Diverging Waves Miaomiao Zhang,Francois Varray,Adrien Besson,Rafael Carrillo,Magalie Viallonet al. IEEE Transactions on Ultrasonics, Ferroelectrics and Frequency Control, 2016, 63 (12), pp.2125 - 2137. ⟨10.1109/TUFFC.2016.2616300⟩ Article dans une revue hal-01433038v1
Standardized evaluation system for left ventricular segmentation algorithms in 3D echocardiography Olivier Bernard,J.G.H. Bosch,B Heyde,M. Alessandrini,D. Barbosaet al. IEEE Transactions on Medical Imaging, 2016, 35 (4), pp.967-977. ⟨10.1109/TMI.2015.2503890⟩ Article dans une revue hal-01272359v1
Cardiac Chamber Volumetric Assessment Using 3D Ultrasound - A Review João Pedrosa,Daniel Barbosa,Nuno Almeida,Olivier Bernard,Johan Boschet al. Current Pharmaceutical Design, 2015, 22 (1), pp.105-121. ⟨10.2174/1381612822666151109112652⟩ Article dans une revue hal-02059844v1
A Pipeline for the Generation of Realistic 3D Synthetic Echocardiographic Sequences: Methodology and Open-access Database. Martino Alessandrini,Mathieu de Craene,Olivier Bernard,Sophie Giffard-Roisin,Pascal Allainet al. IEEE Transactions on Medical Imaging, 2015, 34 (7), pp.1436-1451. ⟨10.1109/TMI.2015.2396632⟩ Article dans une revue hal-01117490v1
3D harmonic phase tracking with anatomical regularization Yitian Zhou,Olivier Bernard,Eric Saloux,Alain Manrique,Pascal Allainet al. Medical Image Analysis, 2015, 26 (1), pp.70-81. ⟨10.1016/j.media.2015.08.003⟩ Article dans une revue istex hal-01272377v1
Compressed sensing reconstruction of 3D ultrasound data using dictionary learning and line-wise subsampling Oana Lorintiu,Herve Liebgott,Martino Alessandrini,Olivier Bernard,Denis Friboulet IEEE Transactions on Medical Imaging, 2015, 34 (12), pp.2467-2477. ⟨10.1109/TMI.2015.2442154⟩ Article dans une revue hal-01180189v1
CMRSegTools: an Osirix plugin for myocardial infarct sizing on DE-CMR images Magalie Viallon,Joel Spaltenstein,Charles de Bourguignon,Coralie Vandroux,Olivier Bernardet al. Journal of Cardiovascular Magnetic Resonance, 2014, 16 (Suppl 1), pp.P204 Article dans une revue inserm-00932134v1
Fast Automatic Myocardial Segmentation in 4D cine CMR datasets S. Queiros,D. Barbosa,Brecht Heyde,P. Morais,L. Vilaça J.et al. Medical Image Analysis, 2014, 18 (7), pp.1115-1131. ⟨10.1016/j.media.2014.06.001⟩ Article dans une revue hal-01015768v1
Whole myocardium tracking in 2D-echocardiography in multiple orientations using a motion constrained level-set T. Dietenbeck,D. Barbosa,Martino Alessandrini,R. Jasaityte,V. Robesynet al. Medical Image Analysis, 2014, 18 (3), pp.500-514. ⟨10.1016/j.media.2014.01.005⟩ Article dans une revue istex hal-00941827v1
A New Technique for the Estimation of Cardiac Motion in Echocardiography Based on Transverse Oscillations: a preliminary evaluation in silico and a feasibility demonstration in vivo Martino Alessandrini,Adrian Basarab,Loic Boussel,Xinxin Guo,André Serusclatet al. IEEE Transactions on Medical Imaging, 2014, vol. 33 (n° 5), pp. 1148-1162. ⟨10.1109/TMI.2014.2305846⟩ Article dans une revue hal-01117833v1
Real-time 3D interactive segmentation of echocardiographic data through user-based deformation of B-spline explicit active surfaces D. Barbosa,Brecht Heyde,M. Cikes,T. Dietenbeck,P. Clauset al. Computerized Medical Imaging and Graphics, 2014, 38 (1), pp.57-67. ⟨10.1016/j.compmedimag.2013.10.002⟩ Article dans une revue istex hal-00941825v1
Blood Velocity Estimation Using Compressive Sensing J. Richy,D. Friboulet,A. Bernard,Olivier Bernard,H. Liebgott IEEE Transactions on Medical Imaging, 2013, 32 (11), pp.1979-1988. ⟨10.1109/TMI.2013.2266871⟩ Article dans une revue hal-00839213v1
Multiscale optical flow computation from the monogenic signal Martino Alessandrini,Olivier Bernard,Adrian Basarab,Hervé Liebgott Innovation and Research in BioMedical engineering, 2013, vol. 34 (n° 1), pp. 33-37. ⟨10.1016/j.irbm.2012.12.015⟩ Article dans une revue istex hal-01121528v1
Fast and Fully Automatic 3D Echocardiographic Segmentation Using B-Spline Explicit Active Surfaces: Feasibility Study and Validation in a Clinical Setting D. Barbosa,T. Dietenbeck,Brecht Heyde,H. Houle,Denis Fribouletet al. Ultrasound in Medicine & Biology, 2013, 39 (1), pp.89-101. ⟨10.1016/j.ultrasmedbio.2012.08.008⟩ Article dans une revue hal-00796930v1
3D strain assessment in ultrasound (straus): A synthetic comparison of five tracking methodologies Mathieu de Craene,Stéphanie Marchesseau,Brecht Heyde,Hang Gao,M. Alessandriniet al. IEEE Transactions on Medical Imaging, 2013, 32 (9), pp.1632 - 1646. ⟨10.1109/TMI.2013.2261823⟩ Article dans une revue hal-00840039v1
A virtual imaging platform for multi-modality medical image simulation. Tristan Glatard,Carole Lartizien,Bernard Gibaud,Rafael Ferreira da Silva,Germain Forestieret al. IEEE Transactions on Medical Imaging, 2013, 32 (1), pp.110-8. ⟨10.1109/TMI.2012.2220154⟩ Article dans une revue inserm-00762497v1
Quantification of Left Ventricular Volume and Global Function using a Fast Fully Automated Segmentation Tool: Validation in a Clinical Setting D. Barbosa,Brecht Heyde,T. Dietenbeck,H. Houle,D. Fribouletet al. International Journal of Cardiac Imaging, 2013, 29 (2), pp.309-316. ⟨10.1007/s10554-012-0103-8⟩ Article dans une revue istex hal-00828453v1
Myocardial Motion Estimation from Medical Images Using the Monogenic Signal Martino Alessandrini,Adrian Basarab,Hervé Liebgott,Olivier Bernard IEEE Transactions on Image Processing, 2013, 22 (3), pp.1084-1095. ⟨10.1109/TIP.2012.2226903⟩ Article dans une revue hal-01121047v2
B-Spline Explicit Active Surfaces: An efficient framework for real-time 3D region-based segmentation Daniel Barbosa,T. Dietenbeck,Joel Schaerer,Jan d'Hooge,Denis Fribouletet al. IEEE Transactions on Image Processing, 2012, 21 (1), pp.241-251. ⟨10.1109/tip.2011.2161484⟩ Article dans une revue hal-00819333v1
Automated Segmentation of a Motion Mask to Preserve Sliding Motion in Deformable Registration of Thoracic CT J. Vandemeulebrouck,Olivier Bernard,S. Rit,J. Kybic,P. Clarysseet al. Medical Physics : The international journal of medical physics research and practice, 2012, 39 (2), pp.1006-1015. ⟨10.1118/1.3679009⟩ Article dans une revue hal-00796666v1
Detection of the whole myocardium in 2D-echocardiography for multiple orientations using a geometrically constrained level-set T. Dietenbeck,Martino Alessandrini,C. Barbosa,Jan d'Hooge,Denis Fribouletet al. Medical Image Analysis, 2012, 16 (2), pp.386-401. ⟨10.1016/j.media.2011.10.003⟩ Article dans une revue istex hal-00796887v1
Using a geometric formulation of annular-like shape priors for constraining variational level-sets M. Alessandrini,T. Dietenbeck,Olivier Basset,Denis Friboulet,Olivier Bernard Pattern Recognition Letters, 2011, 32 (9), pp.1240\textendash1249. ⟨10.1016/j.patrec.2011.03.018⟩ Article dans une revue istex hal-01919687v1
A restoration framework for ultrasonic tissue characterization Martino Alessandrini,Simona Maggio,Jonathan Porée,Luca de Marchi,Nicolo Specialeet al. IEEE Transactions on Ultrasonics, Ferroelectrics and Frequency Control, 2011, 58 (11), pp.2344-2360. ⟨10.1109/TUFFC.2011.2092⟩ Article dans une revue hal-00688924v1
Analysis of motion tracking in echocardiographic image sequences: influence of system geometry and point-spread function B. Touil,A. Basarab,Philippe Delachartre,Olivier Bernard,D. Friboulet Ultrasonics, 2010, 50 (3), pp.373-386. ⟨10.1016/j.ultras.2009.09.001⟩ Article dans une revue istex hal-01919725v1
Variational B-Spline Level-Set: A Linear Filtering Approach for Fast Deformable Model Evolution Olivier Bernard,Denis Friboulet,Philippe Thevenaz,Michael Unser IEEE Transactions on Image Processing, 2009, 18 (6), pp.1179-1191 Article dans une revue hal-00819449v1
Compactly supported radial basis functions based collocation method for level-set evolution in image segmentation A. Gelas,Olivier Bernard,D. Friboulet,R. Prost IEEE Transactions on Image Processing, 2007, 16 (7), pp.1873-1887. ⟨10.1109/TIP.2007.898969⟩ Article dans une revue hal-01919947v1
Statistical modeling of the radio-frequency signal for partially and fully developed speckle based on a Generalized Gaussian model with application to echocardiography Olivier Bernard,B. Touil,J. d'Hooge,D. Friboulet IEEE Transactions on Ultrasonics, Ferroelectrics and Frequency Control, 2007, 54 (10), pp.2189-2194. ⟨10.1109/TUFFC.2007.515⟩ Article dans une revue hal-01919946v1
A level set framework with a shape and motion prior for segmentation and region tracking in echocardiography I. Dydenko,F. Jamal,Olivier Bernard,J. d'Hooge,I.E. Magninet al. Medical Image Analysis, 2006, 10 (2), pp.162-177. ⟨10.1016/j.media.2005.06.004⟩ Article dans une revue istex hal-01919948v1
Statistics of the Radio-Frequency Signal Based on K Distribution with Application to Echocardiography Olivier Bernard,J. d'Hooge,D. Friboulet IEEE Transactions on Ultrasonics, Ferroelectrics and Frequency Control, 2006, 53 (9), pp.1689-1694. ⟨10.1109/TUFFC.2006.1678198⟩ Article dans une revue hal-01919949v1

Communication dans un congrès (60)

Controllable latent diffusion model to evaluate the performance of segmentation methods Romain Deleat-Besson,Celia Goujat,Olivier Bernard,P Croisille,Magalie Viallonet al. International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), 2025, Daejeon, South Korea. In press Communication dans un congrès hal-05225990v1
Adaptation de domaine de segmentations échocardiographiques via l’apprentissage par renforcement Arnaud Judge,Thierry Judge,Nicolas Duchateau,Roman Sandler,Joseph Sokolet al. Colloque Français d'Intelligence Artificielle en Imagerie Biomédicale (IABM), 2025, Nice, France Communication dans un congrès hal-04971655v1
Generation of realistic cardiac ultrasound sequences with ground truth motion and speckle decorrelation Thierry Judge,Nicolas Duchateau,Pierre-Marc Jodoin,Olivier Bernard International Ultrasonics Symposium (IUS), 2025, Utrecht, Netherlands Communication dans un congrès hal-05226018v1
Fusing echocardiography images and medical records for continuous patient stratification Nathan Painchaud,Pierre-Yves Courand,Pierre-Marc Jodoin,Nicolas Duchateau,Olivier Bernard Medical Imaging with Deep Learning (MIDL) - short papers, 2024, Paris, France Communication dans un congrès hal-04825247v1
Domain Adaptation of Echocardiography Segmentation Via Reinforcement Learning Arnaud Judge,Thierry Judge,Nicolas Duchateau,Roman Sandler,Joseph Sokolet al. International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), 2024, Marrakesh, Morocco Communication dans un congrès hal-04650344v1
Fusion d'échocardiographie et de dossiers médicaux pour la caractérisation de l'hypertension Nathan Painchaud,Pierre-Yves Courand,Pierre-Marc Jodoin,Nicolas Duchateau,Olivier Bernard Colloque Français d'Intelligence Artificielle en Imagerie Biomédicale (IABM), 2024, Grenoble, France Communication dans un congrès hal-04825186v1
Développement d’une plateforme dédiée au contrôle de qualité, correction et suivi de données étiquetées pour la segmentation par apprentissage William A. Romero R.,Olivier Bernard,Lorena Petrusca,Nicolas Duchateau,Patrick Clarysseet al. Colloque Français d'Intelligence Artificielle en Imagerie Biomédicale (IABM), 2024, Grenoble, France Communication dans un congrès hal-04825182v1
Segmentation de séquences échocardiographiques avec contraintes de cohérence temporelle Nathan Painchaud,Nicolas Duchateau,Olivier Bernard,Pierre-Marc Jodoin Colloque Français d'Intelligence Artificielle en Imagerie Biomédicale (IABM), 2023, Paris, France Communication dans un congrès hal-04825208v1
Extraction of volumetric indices from echocardiography: which deep learning solution for clinical use? Hang Jung Ling,Nathan Painchaud,Pierre-Yves Courand,Pierre-Marc Jodoin,Damien Garciaet al. Functional Imaging and Modeling of the Heart, Jun 2023, Lyon, France Communication dans un congrès hal-04087268v2
Extraction of Volumetric Indices from Echocardiography: Which Deep Learning Solution for Clinical Use? Hang Jung Ling,Nathan Painchaud,Pierre-Yves Courand,Pierre-Marc Jodoin,Damien Garciaet al. Functional Imaging and Modeling of the Heart. FIMH 2023, Jun 2023, Lyon, France. pp.245-254, ⟨10.1007/978-3-031-35302-4_25⟩ Communication dans un congrès hal-04841708v1
Asymmetric Contour Uncertainty Estimation for Medical Image Segmentation Thierry Judge,Olivier Bernard,Woo-Jin Cho Kim,Alberto Gomez,Agisilaos Chartsiaset al. International Conference on Medical Image Computing and Computer-Assisted Intervention, Oct 2023, Vancoucer, Canada. pp.210-220, ⟨10.1007/978-3-031-43898-1_21⟩ Communication dans un congrès hal-04243975v1
CRISP - Reliable Uncertainty Estimation for Medical Image Segmentation Thierry Judge,Olivier Bernard,Mihaela Porumb,Agisilaos Chartsias,Arian Beqiriet al. Medical Image Computing and Computer Assisted Intervention – MICCAI 2022, Sep 2022, Singapore, Singapore. pp.492-502, ⟨10.1007/978-3-031-16452-1_47⟩ Communication dans un congrès hal-04215854v1
Generation of realistic simulated B-mode image texture with a GAN Nolann Lainé,Guillaume Zahnd,Olivier Bernard,Maciej Orkisz,Herve Liebgott 2022 IEEE International Ultrasonics Symposium (IUS), Oct 2022, Venise, Italy. pp.1-4, ⟨10.1109/IUS54386.2022.9958665⟩ Communication dans un congrès hal-03898005v1
Reaching intra-observer variability in 2-D echocardiographic image segmentation with a simple U-Net architecture Hang Jung Ling,Damien Garcia,Olivier Bernard IEEE International Ultrasonics Symposium (IUS), Oct 2022, Venice, Italy Communication dans un congrès hal-03979523v1
A Duplex Pipeline for the Generation of Realistic Echocardiographic Sequences with Doppler Imaging Yunyun Sun,Khuram Faraz,Thomas Grenier,Patrick Clarysse,Damien Garciaet al. 2020 IEEE International Ultrasonics Symposium (IUS), Sep 2020, Las Vegas, United States. pp.1-4, ⟨10.1109/IUS46767.2020.9251845⟩ Communication dans un congrès hal-03149351v1
Cardiac MRI Segmentation with Strong Anatomical Guarantees Nathan Painchaud,Youssef Skandarani,Thierry Judge,Olivier Bernard,Alain Lalandeet al. MICCAI 2019, 22nd International Conference, Oct 2019, Shenzhen, China. ⟨10.1007/978-3-030-32245-8_70⟩ Communication dans un congrès hal-02318818v1
Deep Learning Segmentation in 2D echocardiography using the CAMUS dataset : Automatic Assessment of the Anatomical Shape Validity Sarah Leclerc,Erik Smistad,Andreas Ostvik,Frederic Cervenansky,Florian Espinosaet al. International conference on Medical Imaging with Deep Learning (MIDL 2019), Jul 2019, London, United Kingdom Communication dans un congrès hal-02395245v1
Deep Learning Applied to Multi-Structure Segmentation in 2D Echocardiography: A Preliminary Investigation of the Required Database Size Sarah Leclerc,Erik Smistad,Thomas Grenier,Carole Lartizien,Andreas Ostviket al. 2018 IEEE International Ultrasonics Symposium (IUS), Oct 2018, Kobe, France. pp.1-4, ⟨10.1109/ULTSYM.2018.8580136⟩ Communication dans un congrès hal-02093095v1
Left ventricle segmentation in 3D ultrasound by combining structured random forests with active shape models Feriel Khellaf,Sarah Leclerc,Jason Voorneveld,Raja Bandaru,Johan Boschet al. SPIE Medical Imaging, Feb 2018, Houston, United States. pp.18 Communication dans un congrès hal-02048104v1
Fully Automatic Real-Time Ejection Fraction and MAPSE Measurements in 2D Echocardiography Using Deep Neural Networks Erik Smistad,Andreas Ostvik,Ivar Mjal Salte,Sarah Leclerc,Olivier Bernardet al. 2018 IEEE International Ultrasonics Symposium (IUS), Oct 2018, Kobe, Japan. pp.1-4 Communication dans un congrès hal-02048093v1
Phase-Based Registration of Cardiac Tagged MR Images by Incorporating Anatomical Constraints Yitian Zhou,Mathieu de Craene,Maxime Sermesant,Olivier Bernard International Workshop on Statistical Atlases and Computational Models of the Heart, Oct 2016, Athens, Greece. pp.39-47, ⟨10.1007/978-3-319-52718-5_5⟩ Communication dans un congrès hal-02048117v1
Fast and Fully Automatic 3D Left Ventricular Segmentation Using Shape-Based B-Spline Explicit Active Surfaces João Pedrosa,Sandro Queirós,Olivier Bernard,Jan Engvall,Thor Edvardsenet al. 2017 IEEE International Ultrasonic Symposium (IUS), Sep 2017, Washington, United States Communication dans un congrès hal-01599974v1
The UltraSound ToolBox Alfonso Rodriguez-Molares,Ole Marius Hoel Rindal,Olivier Bernard,Hervé Liebgott,Andreas Austenget al. 2017 IEEE International Ultrasonic Symposium (IUS), Sep 2017, Washington, United States Communication dans un congrès hal-01599351v1
IMAGERIE DE L’ORIENTATION LOCALE DE LA STRUCTURE TISSULAIRE PAR IMAGERIE ULTRASONORE Emeline Turquin,Lorena Petrusca,Olivier Bernard,Magalie Viallon,Hervé Liebgottet al. Recherche en Imagerie et Technologies pour la Santé (RITS) 2017, Mar 2017, Lyon, France Communication dans un congrès hal-01505208v1
Fourier-based 3D Ultrafast Ultrasound Imaging with Diverging Waves: In Vitro Experiment Validation Zhang Miaomiao,Francois Varray,Lorena Petrusca,Denis Friboulet,Hervé Liebgottet al. 2017 IEEE International Ultrasonic Symposium (IUS), Sep 2017, Washington, United States Communication dans un congrès hal-01599710v1
Fourier-Based Ultrafast Ultrasound Imaging Based on In-phase Quadrature (IQ) Data Miaomiao Zhang,Hervé Liebgott,François Varray,Denis Friboulet,Olivier Bernard 2017 IEEE International Ultrasonic Symposium (IUS), Sep 2017, Washington, United States Communication dans un congrès hal-01599416v1
A fully Automatic and Multi-Structural Segmentation of the Left Ventricle and the Myocardium on Highly Heterogeneous 2D Echocardiographic Data Sarah Leclerc,Thomas Grenier,Florian Espinoza,Olivier Bernard 2017 IEEE International Ultrasonic Symposium (IUS), Sep 2017, Washington, DC, United States. ⟨10.1109/ULTSYM.2017.8092632⟩ Communication dans un congrès hal-01609235v1
Phase-based registration of cardiac tagged MR images using anatomical deformation model Yitian Zhou,Mathieu de Craene,Olivier Bernard 2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI 2016), Apr 2016, Prague, Czech Republic. pp.617-620 Communication dans un congrès hal-02048076v1
Generation of Realistic 4D Synthetic CSPAMM Tagged MR Sequences for Benchmarking Cardiac Motion Tracking Algorithms Yitian Zhou,Mathieu de Craene,Oudom Somphone,Maxime Sermesant,Olivier Bernard International Workshop on Simulation and Synthesis in Medical Imaging, Oct 2016, Athens, Greece. pp.108-117, ⟨10.1007/978-3-319-46630-9_11⟩ Communication dans un congrès hal-02048135v1
Plane-wave imaging challenge in medical ultrasound Herve Liebgott,A Rodriguez-Molares,F. Cervenansky,Jørgen Arendt Jensen,Olivier Bernard Ultrasonics Symposium (IUS), 2016 IEEE International, 2016, Unknown, Unknown Region. pp.1--4 Communication dans un congrès hal-01792365v1
Sparse regularization methods in ultrafast ultrasound imaging Adrien Besson,Rafael Carrillo,Miaomiao Zhang,Denis Friboulet,Olivier Bernardet al. European Signal Processing Conference (Eusipco), Aug 2016, Budapest, Hungary Communication dans un congrès hal-01433212v1
A Fourier-based formalism for 3D ultrafast imaging with diverging waves Zhang Miaomiao,Hervé Liebgott,Francois Varray,Denis Friboulet,Olivier Bernard IEEE International Ultrasonics Symposium (IUS 2016), Sep 2016, Tours, France. ⟨10.1109/ULTSYM.2016.7728805⟩ Communication dans un congrès hal-01433084v1
Sub-sampled Doppler ultrasound reconstruction using block sparse Bayesian learning Oana Lorintiu,Hervé Liebgott,Olivier Bernard,Denis Friboulet Ultrasonics Symposium (IUS), 2015 IEEE International, Oct 2015, Taipei, Taiwan. ⟨10.1109/ULTSYM.2015.0321⟩ Communication dans un congrès hal-01265868v1
Extension of Ultrasound Fourier Slice Imaging theory to sectorial acquisition Zhang Miaomiao,Adrien Besson,Rafael Carrillo,Francois Varray,Magalie Viallonet al. Ultrasonics Symposium (IUS), 2015 IEEE International, Oct 2015, Taipei, Taiwan. ⟨10.1109/ULTSYM.2015.0185⟩ Communication dans un congrès hal-01265845v1
Compressed sensing reconstruction of line-wise sub-sampled 3D echographic images based on dictionary learning: an experimental study Oana Lorintiu,Hervé Liebgott,Adeline Bernard,Olivier Bernard,Denis Friboulet Ultrasonics Symposium (IUS), 2015 IEEE International, Oct 2015, Taipei, Taiwan. ⟨10.1109/ULTSYM.2015.0157⟩ Communication dans un congrès hal-01265811v1
Generation of ultra-realistic synthetic echocardiographic sequences to facilitate standardization of deformation imaging Martino Alessandrini,Brecht Heyde,Sophie Giffard-Roisin,Hervé Delingette,Maxime Sermesantet al. International Symposium on BIOMEDICAL IMAGING: From Nano to Macro (ISBI 2015), Apr 2015, New York, United States. pp.756-759, ⟨10.1109/ISBI.2015.7163982⟩ Communication dans un congrès hal-01117557v1
A Sparse regularization approach for ultrafast ultrasound imaging Rafael Carrillo,Adrien Besson,Zhang Miaomiao,Denis Friboulet,Yves Wiauxet al. Ultrasonics Symposium (IUS), 2015 IEEE International, Oct 2015, Taipei, Taiwan. pp.1-4, ⟨10.1109/ULTSYM.2015.0184⟩ Communication dans un congrès hal-01272389v1
A level-set approach for tracking objects in image sequences using a level conservation constraint: Application to cardiac sequences T. Dietenbeck,D. Barbosa,M. Alessandrini,J. d'Hooge,Denis Fribouletet al. IEEE International Conference on Image Processing (ICIP) 2014, Oct 2014, Paris, France. pp.863 - 866, ⟨10.1109/ICIP.2014.7025173⟩ Communication dans un congrès hal-01117595v1
Segmentation d'images médicales : un parcours via l'imagerie échographique D. Friboulet,Olivier Bernard,D. Barbosa,J. d'Hooge Journée "Panorama de techniques d'imagerie biomédicale" de la Communauté de Compétence Technique Traitement du Signal et des Images (CCT-TS) - CNES, 2014, Toulouse, France Communication dans un congrès hal-01923298v1
Compressed sensing reconstruction of 3D ultrasound data using dictionary learning O. Lorintiu,H. Liebgott,M. Alessandrini,Olivier Bernard,Denis Friboulet IEEE International Conference on Image Processing (ICIP) 2014, Oct 2014, Paris, France. pp.1317-1321, ⟨10.1109/ICIP.2014.7025263⟩ Communication dans un congrès hal-01117604v1
Clinical Expert Delineation of 3D Left Ventricular Echocardiograms for the CETUS Segmentation Challenge Alexandros Papachristidis,Marcel L. Geleijnse,Elena Galli,Brecht Heyde,Martino Alessandriniet al. Challenge on Endocardial Three-dimensional Ultrasound Segmentation, Sep 2014, Boston, United States Communication dans un congrès hal-02048176v1
Speckle decorrelation of motion in Ultrasound Fourier images M. Zhang,H. Liebgott,F. Varray,Denis Friboulet,Olivier Bernard IEEE International Ultrasonics Symposium (IUS) 2014, Sep 2014, Chicago, France. pp.1203 - 1206, ⟨10.1109/ULTSYM.2014.0296⟩ Communication dans un congrès hal-01117703v1
Semi-automatic left-atrial segmentation from volumetric ultrasound using B-spline explicit active surfaces N. Almeida,D. Barbosa,Brecht Heyde,Mada Olimpiu,Denis Fribouletet al. IEEE International Ultrasonics Symposium (IUS) 2014, Sep 2014, Chicago, United States. pp.612-615, ⟨10.1109/ULTSYM.2014.0150⟩ Communication dans un congrès hal-01117543v1
Elastic registration vs. block matching for quantification of cardiac function with 3D ultrasound: Initial results of a direct comparison in silico based on a new evaluation pipeline Martino Alessandrini,Brecht Heyde,Szymon Cygan,Maxime Sermesant,Hervé Delingetteet al. IEEE International Ultrasonics Symposium, Sep 2014, Chicago, United States. pp.608 - 611, ⟨10.1109/ULTSYM.2014.0149⟩ Communication dans un congrès hal-01095790v1
Generation of ultra-realistic synthetic echocardiographic sequences Mathieu de Craene,Martino Alessandrini,Pascal Allain,Stephanie Marchesseau,I Waechter-Stehleet al. Biomedical Imaging (ISBI), 2014 IEEE 11th International Symposium on, Apr 2014, Beijing, China. pp.73 - 76, ⟨10.1109/ISBI.2014.6867812⟩ Communication dans un congrès hal-01095133v1
Challenge on Endocardial Three-dimensional Ultrasound Segmentation (CETUS) Olivier Bernard,Brecht Heyde,Martino Alessandrini,Daniel Barbosa,Sorina Camarasu-Popet al. Challenge on Endocardial Three-dimensional Ultrasound Segmentation, Sep 2014, Boston, United States Communication dans un congrès hal-02048165v1
Ultrasound Fourier slice imaging: a novel approach for ultrafast imaging technique Olivier Bernard,M. Zhang,F. Varray,P. Gueth,Jean-Philippe Thiranet al. IEEE International Ultrasonics Symposium (IUS) 2014, Sep 2014, Chicago, United States. pp.129 - 132, ⟨10.1109/ULTSYM.2014.0033⟩ Communication dans un congrès hal-01117623v1
Segmentation of the left atrium of the heart using B-spline explicit active surfaces (BEAS) D. Barbosa,N. Almeida,Olivier Bernard,Denis Friboulet,E. Samsetet al. CETUS Challenge on Endocardial Three-dimensional Ultrasound Segmentation at MICCAI-2014, Sep 2014, Boston, United States Communication dans un congrès hal-01117578v1
Fast Fully Automatic Segmentation of the Myocardium in 2D cine MR Images S. Queiros,D. Barbosa,Brecht Heyde,P. Morais,D. Fribouletet al. 7th International Conference on Functional Imaging and Modeling of the Heart (FIMH'13), Jun 2013, London, United Kingdom. pp.71-79, ⟨10.1007/978-3-642-38899-6_9⟩ Communication dans un congrès istex hal-00849936v1
Fast Left Ventricle Tracking in 3D Echocardiographic Data Using Anatomical Affine Optical Flow D. Barbosa,B. Heyde,T. Dietenbeck,D. Friboulet,J. d'Hoogeet al. Functional Imaging and Modeling of the Heart (FIMH\textquoteright13), 2013, Unknown, Unknown Region. pp.191-199 Communication dans un congrès hal-01922108v1
Compressive Sensing Ultrasound Imaging using Overcomplete Dictionaries O. Lorintiu,H. Liebgott,Olivier Bernard,D. Friboulet IEEE International Ultrasonics Symposium (IUS) 2013, Jul 2013, Prague, Czech Republic. pp.45-48 Communication dans un congrès hal-00850070v1
Multiview myocardial tracking in echocardiographic 2D sequences using shape and motion constrained level-set T. Dietenbeck,D. Barbosa,M. Alessandrini,R. Jasaityte,V. Robesynet al. 2013 IEEE 10th International Symposium on Biomedical Imaging (ISBI 2013), Apr 2013, San Francisco, United States. pp.1022-1025, ⟨10.1109/ISBI.2013.6556651⟩ Communication dans un congrès hal-02059850v1
Cardiac motion assessement from echocardiographic image sequences by means of the structure multivector Martino Alessandrini,Adrian Basarab,Hervé Liebgott,Olivier Bernard IEEE International Ultrasonics Symposium - US 2013, Jul 2013, Prague, Czech Republic. pp. 1541-1544, ⟨10.1109/ULTSYM.2013.0392⟩ Communication dans un congrès hal-01147282v1
Towards online real-time strain estimation in volumetric us data: Feasibility study and initial clinical validation D. Barbosa,Olivier Bernard,Brecht Heyde,T. Dietenbeck,D. Fribouletet al. IEEE International Ultrasonics Symposium (IUS) 2013, Jul 2013, Prague, Czech Republic. pp.824 - 827, ⟨10.1109/ULTSYM.2013.0212⟩ Communication dans un congrès hal-00941893v1
Oscillations transverses et estimation du mouvement échocardiographie : le Tagging Ultrasonore H. Liebgott,Olivier Bernard,A. Basarab,Loic Boussel,Martino Alessandriniet al. SIAM - Signal et Image en Acoustique Médicale, Jun 2013, Tours, France Communication dans un congrès hal-00921538v1
Hybrid energy approach for real-time b-spline explicit active tracking of surfaces (heartBEATS) D. Barbosa,Olivier Bernard,Brecht Heyde,T. Dietenbeck,D. Fribouletet al. IEEE International Ultrasonics Symposium (IUS) 2013, Jul 2013, Prague, Czech Republic. pp.663 - 666, ⟨10.1109/ULTSYM.2013.0171⟩ Communication dans un congrès hal-00941888v1
Simulation of realistic echocardiographic sequences for ground-truth validation of motion estimation Martino Alessandrini,H. Liebgott,D. Friboulet,Olivier Bernard IEEE International Conference on Image Processing (ICIP'12), Sep 2012, Orlando, United States. pp.2329 - 2332, ⟨10.1109/ICIP.2012.6467363⟩ Communication dans un congrès hal-00830363v1
Monogenic phase based optical flow computation for myocardial motion analysis in 3D echocardiography Martino Alessandrini,H. Liebgott,Olivier Bernard STACOM workshop at MICCAI 2012, Oct 2012, Nice, France Communication dans un congrès hal-00839223v1
Virtual deployment of pipeline flow diverters in cerebral vessels with aneurysms to understand thrombosis Leonardo Flórez-Valencia,Eduardo E. Dávila Serrano,Juan G. Riveros Reyes,Olivier Bernard,Jonas Lattet al. MICCAI-STENT'12 The 1st International MICCAI-Workshop on Computer Assisted Stenting, Oct 2012, Nice, France. pp.49 Communication dans un congrès hal-00842724v1
Monogenic phase based myocardial motion analysis from cardiac ultrasound with transverse oscillations Martino Alessandrini,H. Liebgott,D. Friboulet,Olivier Bernard IEEE International Ultrasonics Symposium 2012, Oct 2012, Dresden, Germany Communication dans un congrès hal-00839216v1

Chapitre d'ouvrage (5)

Phase-Based Heart Motion Estimation in Multimodality Cardiac Imaging Martino Alessandrini,Adrian Basarab,Olivier Bernard,Philippe Delachartre Patrick Clarysse, Denis Friboulet. Multi-Modality Cardiac Imaging, Wiley, pp.217-235, 2015, 9781848212350. ⟨10.1002/9781118574362.ch6⟩ Chapitre d'ouvrage hal-01486128v1
Estimation du mouvement du coeur basée sur la phase en imagerie cardiaque multimodalités M. Alessandrini,A. Basarab,Olivier Bernard,Philippe Delachartre Patrick Clarysse, Denis Friboulet. Traitement et analyse des images cardiaques - Traité IC2 Série Information et Science du vivant, Hermès-Lavoisier, pp.221-248, 2015, 978-2-7462-2563-3 Chapitre d'ouvrage hal-01102832v1
Extraction and Segmentation of Structures in Image Sequences Olivier Bernard,Patrick Clarysse,Thomas Dietenbeck,Denis Friboulet,Stéphanie Jehan-Bessonet al. Patrick Clarysse, Denis Friboulet. Multi-Modality Cardiac Imaging, Wiley, pp.3-64, 2015, 9781848212350. ⟨10.1002/9781118574362.ch1⟩ Chapitre d'ouvrage hal-01486057v1
Evolution de la fécondité et de la mortalité des enfants dans la région du Ntem (Sud Cameroun) Catherine Molines,Olivier Bernard,Hélène Pagezy,Daniel Bley Bahuchet S., Bley D., Pagezy H., Vernazza-Licht N. L'Homme et la forêt tropicale, Editions de Bergier, pp.615-627, 2000, 978-2951184343 Chapitre d'ouvrage hal-01997393v1
Perception de la malnutrition chez l’enfant pré-scolaire dans la vallée du Ntem (Sud Cameroun) Olivier Bernard,Hélène Pagezy,Daniel Bley Bahuchet S., Bley D., Pagezy H., Vernazza-Licht N (eds). L’homme et la Forêt tropicale, Editions de Bergier, pp.629-638, 2000 Chapitre d'ouvrage hal-01997386v1

Pré-publication, Document de travail (1)

Robustly segmenting quadriceps muscles of ultra-endurance athletes with weakly supervised U-Net Hoai-Thu Nguyen,P. Croisille,Magalie Viallon,Sarah Leclerc,Sylvain Grangeet al. 2020 Pré-publication, Document de travail hal-02998055v1

Logiciel (1)

Reinforcement learning framework for domain adaptation of echocardiography segmentation (RL4Seg) Arnaud Judge,Thierry Judge,Nicolas Duchateau,Olivier Bernard,Pierre-Marc Jodoin 2024, ⟨swh:1:dir:e3ac784fd90ca67466049ab351ae849e98c95fdf;origin=https://github.com/arnaudjudge/RL4Seg;visit=swh:1:snp:92d9394522dce00e9c828dc1d63e16527e90f15b;anchor=swh:1:rev:c7182186748ff204de19b5b58dbf9beaff06062c⟩ Logiciel hal-05062979v1