Bertrand Servin

140
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Affiliation actuelle
  • Génétique Physiologie et Systèmes d'Elevage (GenPhySE)
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Publications

Publications

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Sequence‐Based Multi Ancestry Association Study Reveals the Polygenic Architecture of Varroa destructor Resistance in the Honeybee Apis mellifera

Sonia Eynard , Fanny Mondet , Benjamin Basso , Olivier Bouchez , Yves Le Conte et al.
Molecular Ecology, 2025, 34 (3), ⟨10.1111/mec.17637⟩
Article dans une revue hal-04866824 v1
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The genetic architecture of recombination rates is polygenic and differs between the sexes in wild house sparrows ( Passer domesticus )

John Mcauley , Bertrand Servin , Hamish Burnett , Cathrine Brekke , Lucy Peters et al.
Molecular Biology and Evolution, 2024, 41 (9), ⟨10.1093/molbev/msae179⟩
Article dans une revue hal-04681764 v2
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SMARTER-database: a tool to integrate SNP array datasets for sheep and goat breeds

Paolo Cozzi , Arianna Manunza , Johanna Ramirez-Diaz , Valentina Tsartsianidou , Konstantinos Gkagkavouzis et al.
Gigabyte, 2024, 2024, pp.1-15. ⟨10.46471/gigabyte.139⟩
Article dans une revue hal-05006094 v1
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The black honey bee genome: insights on specific structural elements and a first step towards pan-genomes

Sonia Eynard , Christophe Klopp , Kamila Canale-Tabet , William Marande , Céline Vandecasteele et al.
Genetics Selection Evolution, 2023, 56 (1), pp.51. ⟨10.1101/2023.12.06.570386⟩
Article dans une revue hal-04473386 v2

A meta-analysis of genetic and phenotypic diversity of European local pig breeds reveals genomic regions associated with breed differentiation for production traits

Klavdija Poklukar , Camille Mestre , Martin Škrlep , Marjeta Čandek-Potokar , Cristina Ovilo et al.
Genetics Selection Evolution, 2023, 55 (1), pp.88. ⟨10.1186/s12711-023-00858-3⟩
Article dans une revue hal-04329951 v1
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Comparison of genomic-enabled cross selection criteria for the improvement of inbred line breeding populations

Alice Danguy Des Deserts , Nicolas Durand , Bertrand Servin , Ellen Goudemand-Dugué , Jean-Marc Alliot et al.
G3, 2023, 13 (11), 15 p. ⟨10.1093/g3journal/jkad195⟩
Article dans une revue hal-04214520 v1
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Two quantitative trait loci are associated with recapping of Varroa destructor ‐infested brood cells in Apis mellifera mellifera

M. Guichard , B. Dainat , S. Eynard , Alain Vignal , Bertrand Servin et al.
Animal Genetics, 2022, 53 (1), pp.156-160. ⟨10.1111/age.13150⟩
Article dans une revue hal-03540810 v1
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Genome‐wide analysis of hybridization in wild boar populations reveals adaptive introgression from domestic pig

Nicolas Mary , Nathalie Iannuccelli , Geoffrey Petit , Nathalie Bonnet , Alain Pinton et al.
Evolutionary Applications, 2022, 15 (7), pp.1115-1128. ⟨10.1111/eva.13432⟩
Article dans une revue hal-03740011 v1
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Complex population structure and haplotype patterns in the Western European honey bee from sequencing a large panel of haploid drones

David Wragg , Sonia Eynard , Benjamin B. Basso , Kamila Canale-Tabet , Emmanuelle Labarthe et al.
Molecular Ecology Resources, 2022, 22 (8), pp.3068-3086. ⟨10.1111/1755-0998.13665⟩
Article dans une revue hal-03807491 v1
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Reconstructing queen genotypes by pool sequencing colonies in eusocial insects: Statistical Methods and their application to honeybee

Sonia E Eynard , Alain Vignal , Benjamin Basso , Kamila Canale‐tabet , Yves Le Conte et al.
Molecular Ecology Resources, 2022, 22 (8), pp.3035-3048. ⟨10.1111/1755-0998.13685⟩
Article dans une revue hal-03855231 v1
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Gene Banks as Reservoirs to Detect Recent Selection: The Example of the Asturiana de los Valles Bovine Breed

Simon Boitard , Cyriel Paris , Natalia Sevane , Bertrand Servin , Kenza Bazi-Kabbaj et al.
Frontiers in Genetics, 2021, 12, ⟨10.3389/fgene.2021.575405⟩
Article dans une revue hal-03357162 v1
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Local adaptations of Mediterranean sheep and goats through an integrative approach

Bruno Serranito , Marco Cavalazzi , Pablo Vidal , Dominique Taurisson-Mouret , Elena Ciani et al.
Scientific Reports, 2021, 11, pp.21363. ⟨10.1038/s41598-021-00682-z⟩
Article dans une revue hal-03421679 v1
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Identification of quantitative trait loci associated with calmness and gentleness in honey bees using whole‐genome sequences

Matthieu Guichard , Benjamin Dainat , Sonia Eynard , Alain Vignal , Bertrand Servin et al.
Animal Genetics, 2021, pp.13070. ⟨10.1111/age.13070⟩
Article dans une revue hal-03252574 v1
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Genomic Uniqueness of Local Sheep Breeds From Morocco

Abdessamad Ouhrouch , Simon Boitard , Frédéric Boyer , Bertrand Servin , Anne da Silva et al.
Frontiers in Genetics, 2021, 12, pp.723599. ⟨10.3389/fgene.2021.723599⟩
Article dans une revue hal-03591256 v1

Local adaptations of Mediterranean sheep and goats through an integrative approach

Éric Rouvellac , Serranito Bruno , Marco Cavalazzi , Pablo Vidal , Dominique Taurisson-Mouret et al.
Scientific Reports, 2021, 11 (21363 (2021)), https://doi.org/10.1038/s41598-021-00682-z
Article dans une revue hal-04973085 v1
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Evolution of recombination landscapes in diverging populations of bread wheat

Alice Danguy Des Déserts , Sophie Bouchet , Pierre Sourdille , Bertrand Servin
Genome Biology and Evolution, 2021, 13 (8), ⟨10.1093/gbe/evab152⟩
Article dans une revue hal-03290674 v1
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Analyse de l'hybridation dans les populations françaises de sangliers à l'aide de données de génotypage pangénomique

Nicolas Mary , Nathalie Iannuccelli , Geoffrey Petit , Nathalie Bonnet , Alain Pinton et al.
Journées de la Recherche Porcine en France, 2021
Article dans une revue hal-03482640 v1
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MOSAR -Méthodes et Outils pour la Sélection d'Abeilles Résistantes à Varroa

Benjamin B. Basso , Sonia E. Eynard , Alain Vignal , Maxime Beguin , Anne-Laure Guirao et al.
Innovations Agronomiques, 2021, 82, pp.229-245. ⟨10.15454/zna6-4g12⟩
Article dans une revue hal-03159732 v1
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Evaluation of Suppressed Mite Reproduction (SMR) Reveals Potential for Varroa Resistance in European Honey Bees (Apis mellifera L.)

Fanny Mondet , Melanie Parejo , Marina Meixner , Cecilia Costa , Per Kryger et al.
Insects, 2020, 11 (9), pp.595. ⟨10.3390/insects11090595⟩
Article dans une revue hal-02933234 v1
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Descriptive analysis of the varroa non-reproduction trait in honey bee colonies and association with other traits related to varroa resistance

Sonia E. Eynard , Christina Sann , Benjamin Basso , Anne-Laure Guirao , Yves Le Conte et al.
Insects, 2020, 11 (8), pp.1-16. ⟨10.3390/insects11080492⟩
Article dans une revue hal-02937567 v1
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Genetic diversity analysis of French goat populations reveals selective sweeps involved in their differentiation

Claire Oget , Bertrand Servin , Isabelle Palhiere
Animal Genetics, 2019, 50 (1), pp.54-63. ⟨10.1111/age.12752⟩
Article dans une revue hal-02624348 v1
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Inference of Selection from Genetic Time Series Using Various Parametric Approximations to the Wright-Fisher Model

Cyriel Paris , Bertrand Servin , Simon Boitard
G3, 2019, 9 (12), pp.4073-4086. ⟨10.1534/g3.119.400778⟩
Article dans une revue hal-02624801 v1
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Genome-wide SNP profiling of worldwide goat populations reveals strong partitioning of diversity and highlights post-domestication migration routes

Licia Colli , Marco Milanesi , Andrea Talenti , Francesca Bertolini , Minhui Chen et al.
Genetics Selection Evolution, 2018, 50 (1), pp.58. ⟨10.1186/s12711-018-0422-x⟩
Article dans une revue hal-02405280 v1

Meta-analysis of genome-wide association studies for cattle stature identifies common genes that regulate body size in mammals

Aniek C. Bouwman , Hans D. Daetwyler , Amanda J. Chamberlain , Carla Hurtado Ponce , Mehdi Sargolzaei et al.
Nature Genetics, 2018, 50 (3), pp.362-367. ⟨10.1038/s41588-018-0056-5⟩
Article dans une revue hal-02628780 v1
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Revealing the selection history of adaptive loci using genome-wide scans for selection: an example from domestic sheep

Christina Rochus , Flavie Tortereau , Florence Plisson-Petit , Gwendal Restoux , Carole Moreno-Romieux et al.
BMC Genomics, 2018, 19 (1), pp.Non Paginé. ⟨10.1186/s12864-018-4447-x⟩
Article dans une revue hal-02626935 v1
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Signatures of selection and environmental adaptation across the goat genome post-domestication

Francesca Bertolini , Bertrand Servin , Andrea Talenti , Estelle Rochat , Eui Soo Kim et al.
Genetics Selection Evolution, 2018, 50 (1), pp.57. ⟨10.1186/s12711-018-0421-y⟩
Article dans une revue hal-02405277 v1
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Convergent genomic signatures of domestication in sheep and goats

Florian Alberto , Frédéric Boyer , Pablo Orozco-Terwengel , Ian Streeter , Bertrand Servin et al.
Nature Communications, 2018, 9 (1), pp.813. ⟨10.1038/s41467-018-03206-y⟩
Article dans une revue cea-01875703 v1
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Development of a SNP panel dedicated to parentage assignment in French sheep populations

Flavie Tortereau , Carole Moreno-Romieux , Gwenola Tosser-Klopp , Bertrand Servin , Jérôme Raoul
BMC Genetics, 2017, 18 (1), Non paginé. ⟨10.1186/s12863-017-0518-2⟩
Article dans une revue hal-01605129 v1

High-Resolution Mapping of Crossover Events in the Hexaploid Wheat Genome Suggests a Universal Recombination Mechanism

Benoit Darrier , Hélène Rimbert , François Balfourier , Lise Pingault , Ambre-Aurore Josselin et al.
Genetics, 2017, 206 (3), pp.1373-1388. ⟨10.1534/genetics.116.196014⟩
Article dans une revue hal-04686468 v1
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Variation in Recombination Rate and Its Genetic Determinism in Sheep Populations

Morgane Petit , Jean-Michel Astruc , Julien Sarry , Laurence Drouilhet , Stéphane Fabre et al.
Genetics, 2017, 207 (2), pp.767-784. ⟨10.1534/genetics.117.300123⟩
Article dans une revue hal-02624341 v1
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Genome-Wide Identification of the Mutation Underlying Fleece Variation and Discriminating Ancestral Hairy Species from Modern Woolly Sheep

Julie Demars , Margarita Cano , Laurence Drouilhet , Florence Plisson-Petit , Philippe Bardou et al.
Molecular Biology and Evolution, 2017, 34 (7), pp.1722-1729. ⟨10.1093/molbev/msx114⟩
Article dans une revue hal-01608205 v1
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Uncovering Adaptation from Sequence Data : Lessons from Genome Resequencing of Four Cattle Breeds

Simon Boitard , Mekki Boussaha , Aurelien Capitan , Dominique Rocha , Bertrand Servin
Genetics, 2016, 203 (1), pp.433-450. ⟨10.1534/genetics.115.181594⟩
Article dans une revue hal-01533825 v1
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Spatio-temporal gene expression profiling during in vivo early ovarian folliculogenesis: integrated transcriptomic study and molecular signature of early follicular growth

Agnès Bonnet , Bertrand Servin , Philippe Mulsant , Béatrice Mandon-Pepin
PLoS ONE, 2015, 5 (November), pp.1-25. ⟨10.1371/journal.pone.0141482⟩
Article dans une revue hal-02634306 v1
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Combined QTL and selective sweep mappings with coding SNP annotation and cis-eQTL analysis revealed PARK2 and JAG2 as new candidate genes for adiposity regulation.

Pierre-François Roux , Simon Boitard , Anne Blum , Brian Parks , Alexandra Montagner et al.
G3, 2015, 5, pp.517-529. ⟨10.1534/g3.115.016865⟩
Article dans une revue hal-01194040 v1

Large-scale investigation of response to [i]Eimeria Maxima[/i] challenge in broilers

Edin Hamzic , Bertrand Bed'Hom , Herve Juin , R Hawken , M. S. Abrahamsen et al.
Journal of Animal Science, 2015, 93 (4), pp.1830-1840. ⟨10.2527/jas2014-8592⟩
Article dans une revue hal-01194093 v1
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Genome Scan for Selection in Structured Layer Chicken Populations Exploiting Linkage Disequilibrium Information

Mahmood Gholami , Christian Reimer , Malena Erbe , Rudolf Preisinger , Annett Weigend et al.
PLoS ONE, 2015, 10 (7), pp.1-15. ⟨10.1371/journal.pone.0130497⟩
Article dans une revue hal-02631302 v1
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Genome-wide association study and biological pathway analysis of the Eimeria maxima response in broilers

Edin Hamzić , Bart Buitenhuis , Frédéric Hérault , Rachel Hawken , Mitchel S. Abrahamsen et al.
Genetics Selection Evolution, 2015, 47 (1), pp.91. ⟨10.1186/s12711-015-0170-0⟩
Article dans une revue hal-01341325 v1
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Evolutionary origin of Bone Morphogenetic Protein 15 and growth and differentiation factor 9 and differential selective pressure between mono- and polyovulating species

Olivier Monestier , Bertrand Servin , Sylvain Auclair , Thomas Bourquard , Anne Poupon et al.
Biology of Reproduction, 2014, 91 (4), pp.1-13. ⟨10.1095/biolreprod.114.119735⟩
Article dans une revue hal-01129871 v1
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An update of the goat genome assembly using dense radiation hybrid maps allows detailed analysis of evolutionary rearrangements in Bovidae

Xiaoyong Du , Bertrand Servin , James E. Womack , Jianhua Cao , Mei Yu et al.
BMC Genomics, 2014, 15, ⟨10.1186/1471-2164-15-625⟩
Article dans une revue hal-02631615 v1
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Transcriptome-wide investigation of genomic imprinting in chicken

Laure Fresard , Sophie Leroux , Bertrand Servin , David Gourichon , Patrice Dehais et al.
Nucleic Acids Research, 2014, 42 (6), pp.3768-3782. ⟨10.1093/nar/gkt1390⟩
Article dans une revue hal-01019569 v1
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The sheep genome illuminates biology of the rumen and lipid metabolism

Yu Jiang , Min Xie , Wenbin Chen , Richard Talbot , Jillian F. Maddox et al.
Science, 2014, 344 (6188), pp.1168-1173. ⟨10.1126/science.1252806⟩
Article dans une revue hal-02635391 v1
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Selection signatures in worldwide sheep populations

María Inés Fariello , Bertrand Servin , Gwenola Tosser-Klopp , Rachel Rupp , Carole Moreno-Romieux et al.
PLoS ONE, 2014, 9 (8), pp.1-12. ⟨10.1371/journal.pone.0103813⟩
Article dans une revue hal-02640427 v1
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A genome-wide association study of production traits in a commercial population of Large White pigs: evidence of haplotypes affecting meat quality

Marie-Pierre Sanchez , Thierry Tribout , Nathalie Iannuccelli , Marcel Bouffaud , Bertrand Servin et al.
Genetics Selection Evolution, 2014, 46 (1), pp.1-12. ⟨10.1186/1297-9686-46-12⟩
Article dans une revue hal-01193779 v1
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A genome-wide association study points out the causal implication of SOX9 in the sex-reversal phenotype in XX pigs

Sarah Rousseau Rousseau , Nathalie N. Iannuccelli , Marie-Jose Mercat-Gernigon Mercat , Claire Naylies , Jean-Claude J.-C. Thouly et al.
PLoS ONE, 2013, 8 (11), pp.1-11. ⟨10.1371/journal.pone.0079882⟩
Article dans une revue hal-01004777 v1
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Adaptation of maize to temperate climates: mid-density genome-wide association genetics and diversity patterns reveal key genomic regions, with a major contribution of the Vgt2 (ZCN8) locus

Sophie Bouchet , Bertrand Servin , Pascal Bertin , Delphine D. Madur , Valerie V. Combes et al.
PLoS ONE, 2013, 8 (8), ⟨10.1371/journal.pone.0071377⟩
Article dans une revue hal-02652500 v1

Sequencing and automated whole-genome optical mapping of the genome of a domestic goat (Capra hircus)

Yang Dong , Min Xie , Yu Jiang , Nianqing Xiao , Xiaoyong Du et al.
Nature Biotechnology, 2013, 31 (2), pp.135-141. ⟨10.1038/nbt.2478⟩
Article dans une revue hal-02651460 v1

Detecting signatures of selection through haplotype differentiation among hierarchically structured populations.

María Inés Fariello , Simon Boitard , Hugo Naya , Magali San Cristobal , Bertrand Servin
Genetics, 2013, 193 (3), pp.929-41. ⟨10.1534/genetics.112.147231⟩
Article dans une revue hal-00842696 v1
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Fine mapping of complex traits in non-model species: using next generation sequencing and advanced intercross lines in Japanese quail

Laure Fresard , Sophie Leroux , Patrice Dehais , Bertrand Servin , Hélène Gilbert et al.
BMC Genomics, 2012, 13, online (october), Non paginé. ⟨10.1186/1471-2164-13-551⟩
Article dans une revue hal-01129669 v1

Analyses of pig genomes provide insight into porcine demography and evolution

Martien A. M. Groenen , Alan L. Archibald , Hirohide Uenishi , Christopher K. Tuggle , Yasuhiro Takeuchi et al.
Nature, 2012, 491 (7426), pp.393-398. ⟨10.1038/nature11622⟩
Article dans une revue cea-00880676 v1
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A high density recombination map of the pig reveals a correlation between sex-specific recombination and GC content

Flavie Tortereau , Bertrand Servin , Laurent Frantz , Hendrik-Jan Megens , Denis Milan et al.
BMC Genomics, 2012, 13, online (november), Non paginé. ⟨10.1186/1471-2164-13-586⟩
Article dans une revue hal-02646895 v1
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High-resolution autosomal radiation hybrid maps of the pig genome and their contribution to the genome sequence assembly

Bertrand Servin , Thomas Faraut , Nathalie N. Iannuccelli , Diana Zelenika , Denis Milan
BMC Genomics, 2012, 13, online (november), Non paginé. ⟨10.1186/1471-2164-13-585⟩
Article dans une revue hal-02644217 v1
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Genome-wide analysis of the world’s sheep breeds reveals high levels of historic mixture and strong recent selection

James W. Kijas , Johannes A. Lenstra , Ben Hayes , Simon S. Boitard , Laercio R. Porto Neto et al.
PLoS Biology, 2012, 10, online (2), Non paginé. ⟨10.1371/journal.pbio.1001258⟩
Article dans une revue hal-02652546 v1
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A locally congenic backcross design in pig: a new regional fine QTL mapping approach miming congenic strains used in mouse

Juliette Riquet , Hélène Gilbert , Bertrand Servin , Marie-Pierre Sanchez , Nathalie N. Iannuccelli et al.
BMC Genetics, 2011, 12, online (january), pp.1-9. ⟨10.1186/1471-2156-12-6⟩
Article dans une revue hal-01000531 v1

Statistical confidence measures for genome maps: application to the validation of genome assemblies

Bertrand Servin , Simon de Givry , Thomas Faraut
Bioinformatics, 2010, 26 (24), pp.3035-3042. ⟨10.1093/bioinformatics/btq598⟩
Article dans une revue hal-02665786 v1

Detecting selection in population trees: the Lewontin and Krakauer test extended.

Maxime Bonhomme , Claude Chevalet , Bertrand Servin , Simon Boitard , Jihad Abdallah et al.
Genetics, 2010, 186 (1), pp.241-62. ⟨10.1534/genetics.104.117275⟩
Article dans une revue hal-00842515 v1

Genetic variability and linkage disequilibrium patterns in the bovine DNAJA1 gene

Amandine Marty , Yves Amigues , Bertrand Servin , Gilles Renand , Hubert H. Levéziel et al.
Molecular Biotechnology, 2010, 44 (3), pp.190-197. ⟨10.1007/s12033-009-9228-y⟩
Article dans une revue istex hal-01193442 v1

Detecting Selection in Population Trees: The Lewontin and Krakauer Test Extended

Maxime Bonhomme , Claude C. Chevalet , Bertrand Servin , Simon S. Boitard , Jihad Abdallah et al.
Genetics, 2010, 186 (1), pp.241-262. ⟨10.1534/genetics.110.117275⟩
Article dans une revue hal-02655907 v1

Contribution of Radiation Hybrids to Genome Mapping in Domestic Animals.

Thomas Faraut , Simon de Givry , Christophe Hitte , Yvette Lahbib Mansais , Mireille Morisson et al.
Cytogenetic and Genome Research, 2009, 126 (1-2), pp.21-33. ⟨10.1159/000245904⟩
Article dans une revue inserm-00442389 v1

Genome sequence of the -rhizobium Cupriavidus taiwanensis and comparative genomics of rhizobia

Claire Amadou , Géraldine Pascal , Sophie Mangenot , Michelle Glew , Cyril Bontemps et al.
Genome Research, 2008, 18 (9), pp.1472 - 1483. ⟨10.1101/gr.076448.108⟩
Article dans une revue hal-01655676 v1
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Imputation-based analysis of association studies: candidate regions and quantitative traits

Bertrand Servin , Matthew Stephens
PLoS Genetics, 2007, 3, pp.1296-1308. ⟨10.1371/journal.pgen.0030114⟩
Article dans une revue hal-02662573 v1

Toward a Theory of Marker-Assisted Gene Pyramiding

Bertrand Servin , Olivier C. Martin , Marc Mézard , Frédéric Hospital
Genetics, 2004, 168, pp.513-523. ⟨10.1534/genetics.103.023358⟩
Article dans une revue hal-00009229 v1

Marker-assisted introgression of 4 Phytophthora capsici resistance QTL alleles into a bell pepper line: validation of additive and epistatic effects

A. Thabuis , Alain Palloix , Bertrand Servin , A.M. Daubèze , Patrick Signoret et al.
Molecular Breeding, 2004, 14, pp.9-20
Article dans une revue hal-02671845 v1

Marker-assisted introgression of five QTLs controlling fruit quality traits into three tomato lines revealed interactions between QTLs and genetic backgrounds

L. Lecomte , Philippe Duffe , Michel Buret , Bertrand Servin , Frederic F. Hospital et al.
TAG Theoretical and Applied Genetics, 2004, 109, pp.658-668. ⟨10.1007/s00122-004-1674-0⟩
Article dans une revue istex hal-02675933 v1
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Sequence-based genome-wide association studies reveal the polygenic architecture of Varroa destructor resistance in Western honey bees Apis mellifera

Sonia Eynard , Fanny Mondet , Benjamin Basso , Olivier Bouchez , Tabatha Bulach et al.
2024
Pré-publication, Document de travail hal-04493727 v1

SelNeTime: a python package inferring effective population size and selection intensity from genomic time series data

Mathieu Uhl , Miguel Navascués , Simon Boitard , Bertrand Servin
2024
Pré-publication, Document de travail hal-04784414 v1

Sex-differences in the genetic architecture of individual recombination rates in wild house sparrows ( Passer domesticus )

John Mcauley , Bertrand Servin , Lucy Peters , Ingerid Hagen , Alina Niskanen et al.
2023
Pré-publication, Document de travail hal-04186240 v1

Discovering genomic regions associated with the phenotypic differentiation of European local pig breeds

Klavdija Poklukar , Camille Mestre , Martin Škrlep , Marjeta Čandek-Potokar , Cristina Ovilo et al.
2023
Pré-publication, Document de travail hal-04186069 v1

Multiple adaptive solutions to face climatic constraints: novel insights in the debate over the role of convergence in local adaptation

Badr Benjelloun , Kevin Leempoel , Frédéric Boyer , Sylvie Stucki , Ian Streeter et al.
2023
Pré-publication, Document de travail hal-04186277 v1
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Evolution of recombination landscapes in diverging populations of bread wheat

Alice Danguy Des Déserts , Sophie Bouchet , Pierre Sourdille , Bertrand Servin
2021
Pré-publication, Document de travail (preprint/prepublication) hal-03244446 v1
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From group to individual - Genotyping by pool sequencing eusocial colonies

Sonia Eynard , Alain Vignal , Benjamin B. Basso , Yves Le Conte , Axel Decourtye et al.
2021
Pré-publication, Document de travail hal-03482633 v1
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Complex population structure and haplotype patterns in Western Europe honey bee from sequencing a large panel of haploid drones

David Wragg , Sonia E Eynard , Benjamin B. Basso , Kamila Canale-Tabet , Emmanuelle Labarthe et al.
2021
Pré-publication, Document de travail (preprint/prepublication) hal-03482707 v1
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High density genome scan for selection signatures in French sheep reveals allelic heterogeneity and introgression at adaptive loci

Christina Marie Rochus , Flavie Tortereau , Bertrand Servin , Florence Plisson-Petit , Gwendal Restoux et al.
2024
Pré-publication, Document de travail (preprint/prepublication) hal-04746565 v1

Variation in recombination rate and its genetic determinism in sheep ( Ovis Aries ) populations from combining multiple genome-wide datasets

Morgane Petit , Jean-Michel Astruc , Julien Sarry , Laurence Drouilhet , Stéphane Fabre et al.
2017
Pré-publication, Document de travail hal-02936802 v1
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Inferring demography and selection from genomic time series data

Paul Bunel , Mathieu Uhl , Miguel de Navascués , Bertrand Servin , Simon Boitard
Webinaire TIMe-ID, Jun 2025, Online, France
Communication dans un congrès hal-05107536 v1
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A Bayesian approach to characterize the distribution of adaptive effects from multiple population data

Lucy Peters , Bertrand Servin
PopGroup 57, University of St-Andrews, Jan 2024, St-Andrews (Écosse), United Kingdom
Communication dans un congrès hal-05006397 v1

Genotyping a thousand animals using low coverage sequencing and imputation

Cervin Guyomar , Denis Milan , Christophe Klopp , Cécile Donnadieu , Bertrand Servin et al.
Genotoul biostat bioinfo day, Genotoul, Nov 2023, Toulouse, France
Communication dans un congrès hal-04669286 v1

Real-time monitoring of genetic diversity in animal populations: the RAGEMO project

Coralie Danchin-Burge , Isabelle Palhiere , Bertrand Servin , Gwendal Restoux
Book of Abstracts of the 74. Annual Meeting of the European Federation of Animal Science, INRAE, Aug 2023, Lyon, France. pp.383
Communication dans un congrès hal-04199749 v1

GENOME WIDE ASSOCIATION STUDY ON VARROA RESISTANCE TRAITS IN FRENCH HONEYBEE POPULATIONS

Sonia E. Eynard , Alain Vignal , Benjamin B. Basso , Olivier Bouchez , Tabatha Bulach et al.
9th European Congress of Apidology, Sep 2022, Belgrade, Serbia
Communication dans un congrès hal-03855289 v1
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Sex differences in recombination maps are associated with differential hotspot usage in sheep

Héléna Vassilief , Mohamed Id Bella , Flavie Tortereau , Dominique Hazard , Thomas Faraut et al.
World Congress on Genetics Applied to Livestock Production, Jul 2022, Rotterdam, Netherlands. pp.861-864, ⟨10.3920/978-90-8686-940-4_202⟩
Communication dans un congrès hal-04065264 v1

Evolution of recombination landscapes in diverging populations of bread wheat

Alice Danguy Des Deserts , Sophie Bouchet , Pierre Sourdille , Bertrand Servin
IWGSC (International Wheat Genome Sequencing Consortium ), Mar 2022, Webinar, France
Communication dans un congrès hal-04353824 v1

Genotyping By Pool Sequencing Eusocial Colonies and Its Applications to Honeybee

Sonia E Eynard , Alain Vignal , Benjamin B. Basso , Yves Le Conte , Kamila Tabet et al.
XXVIIII Plant and Animal Genome, Jan 2022, San Diego, France
Communication dans un congrès hal-04473343 v1

In search of the honey bee centromeres: regions with tandem repeats high at content and low recombination rates

Alain Vignal , Sonia E Eynard , Christophe Klopp , Bertrand Servin , Kamila Canale-Tabet et al.
9th European Congress of Apidology, Sep 2022, Belgrade, Serbia
Communication dans un congrès hal-03855207 v1
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Suivi génomique des origines raciales lors de la création d'une lignée synthétique porcine

Audrey Ganteil , Bertrand Servin , Vincent Cousin , Carolina Garcia-Baccino , Bruno Ligonesche et al.
54ème Journées de la recherche porcine, Feb 2022, Paris, France
Communication dans un congrès hal-03552040 v1

Statistics for an accurate genome wide association study on Varroa resistance trait in a French honeybee

Sonia E Eynard , Alain Vignal , Benjamin B. Basso , Olivier Bouchez , Tabatha Bulach et al.
9 Congress of Apidology (EurBee), Sep 2022, Berlgrade, Serbia
Communication dans un congrès hal-05208134 v1

Statistics for an accurate genome wide association study on Varroa resistance trait in a French honeybee

Sonia E Eynard , A. Vignal , Yves Agez , Benjamin B. Basso , Olivier Bouchez et al.
World Congress on Genetics Applied to Livestock Production, Jul 2022, Rotterdam, Netherlands
Communication dans un congrès hal-03859236 v1

Statistical models for the genetic characterisation of honeybee colonies from whole genome pool sequencing data.

Sonia E Eynard , Alain Vignal , Christina Sann , Fanny Mondet , Benjamin B. Basso et al.
PopGroup 54, Jan 2021, Online, France
Communication dans un congrès hal-04473366 v1
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Statistical Imputation of Queen Genotype from Pool Sequencing of Workers

Bertrand Servin , Sonia Eynard , Fanny Mondet , Lucie Genestout , Olivier Bouchez et al.
PLant and Animal Genome, Jan 2020, San Diego, United States
Communication dans un congrès hal-02938108 v1
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European Honeybee Subspecies Genomes at the Individual and Population Levels

Alain Vignal , Benjamin Basso , Kaspar Bienefeld , Kamila Canale-Tabet , Cecilia Costa et al.
Plant and Animal Genome, Sep 2020, San Diego, United States
Communication dans un congrès hal-02938071 v1

SMARTER EU project: SMAll RuminanTs breeding for efficiency and resilience

Carole Moreno-Romieux , J.J. Arranz , J.M. Astruc , D. Berry , T. Byrne et al.
71st Annual Meeting of the European Federation of Animal Science, 2020, Virtual, Portugal
Communication dans un congrès hal-03292977 v1

Characterisation of the genotype of honey bee colonies from pool sequences

Sonia Eynard , Christina Sann , Fanny Mondet , Benjamin Basso , Kamila Canale-Tabet et al.
46. APIMONDIA - International Apicultural Congress, Sep 2019, Montreal, Canada
Communication dans un congrès hal-02789560 v1
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Inference of selection from genetic time series using various parametric approximations to the Wright-Fisher model

Cyriel Paris , Bertrand Servin , Simon Boitard
Workshop ’Evolutionary genomics and life history traits’, labex CeMeb, Oct 2019, Montpellier, France
Communication dans un congrès hal-02921834 v1

BeeStrong : towards a genomic tool for the selection of varroa resistant honey bees

Christina Sann , Yannick Poquet , Benjamin B. Basso , Sonia Eynard , Bertrand Servin et al.
46. APIMONDIA - International Apicultural Congress, Sep 2019, Montreal, Canada
Communication dans un congrès hal-02788639 v1

Annotation of selection signatures in the bovine breed Asturiana de Valles

Cyriel Paris , Simon Boitard , Bertrand Servin , Natalia Sevane , Susana Dunner
70. Annual Meeting of the European Association for Animal Production (EAAP), Aug 2019, Ghent, Belgium. 717 p
Communication dans un congrès hal-02735190 v1

INRA in TREASURE project. Activities and results

Bénédicte Lebret , Florence Garcia-Launay , Ludovic Brossard , Justine Faure , Bertrand Servin et al.
TREASURE congerence, Feb 2019, Ljubljana, Slovenia
Communication dans un congrès hal-02790935 v1

De novo genome assembly of a western European Apis mellifera mellifera black bee

Alain Vignal , Sonia E Eynard , Christophe Klopp , Kamila Canale Tabet , William Marande et al.
Apimondia, Sep 2019, Montréal, Canada
Communication dans un congrès hal-04796454 v1

The analysis of sheep and goat genomes reveals new biological mechanisms explaining the variation of Mendelian and complex phenotypes

Gwenola Tosser-Klopp , Julie Demars , Laurence Drouilhet , Stéphane Fabre , Thomas Faraut et al.
Séminaire mensuel (CRAG), Nov 2018, Barcelone, Spain
Communication dans un congrès hal-02785242 v1

BeeStrong: towards a genomic tool for the selection of Varroa resistant honey bees

Christina Sann , Yannick Poquet , Benjamin Basso , Fanny Mondet , Sonia Eynard et al.
8. Congress of Apidology (EurBee 8), Sep 2018, Ghent, Belgium
Communication dans un congrès hal-02786490 v1

De novo genome assembly of a western European Apis mellifera mellifera black bee

Alain Vignal , Sonia Eynard , Christophe Klopp , Kamila Canale-Tabet , William Marande et al.
8. Congress of Apidology (EurBee 8), Sep 2018, Ghent, Belgium
Communication dans un congrès hal-02785743 v1

Signatures génomiques de l'histoire évolutive des races caprines françaises

Claire Oget , Pierre Martin , Bertrand Servin , Isabelle Palhiere
24. Rencontres Recherches Ruminants (3R), Dec 2018, Paris, France
Communication dans un congrès hal-02735092 v1

Exploiting genomic data of autochthonous pig breeds: conservation genetics comes of age

Luca Fontanesi , G. Schiavo , S. Bovo , A. Ribani , C. Geraci et al.
69. Annual Meeting of the European Federation of Animal Science (EAAP), Aug 2018, Dubrovnik, Croatia. 705 p
Communication dans un congrès hal-02735401 v1

Explaining the resistance to Varroa destructor in the French honey bee population with VSH, SMR and colony dynamic data

Sonia Eynard , Benjamin Basso , Anne-Laure Guirao , Fanny Mondet , Alain Vignal et al.
8. Congress of Apidology (EurBee 8), Sep 2018, Ghent, Belgium
Communication dans un congrès hal-02785764 v1

Study of recombination rate in Lacaune sheep informs its evolution in Soay sheep

Morgane Petit , Carole Moreno-Romieux , Bertrand Servin
XVI Gordon Research Conference : Quantitative Genetics & Genomics, Feb 2017, Huston, United States
Communication dans un congrès hal-01605198 v1

Insights on the genetic determinism and evolution of recombination rates in Sheep

Morgane Petit , Stéphane Fabre , Julien Sarry , Carole Moreno , Bertrand Servin
68. Annual Meeting of the European Association for Animal Production (EAAP), Aug 2017, Tallinn, Estonia. 513 p
Communication dans un congrès hal-02736538 v1
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EIF2S2 Retroposition into IRF2BP2 Underlies Fleece Variation in Sheep through the Formation of a Long Endogenous Double-Stranded RNA

Julie Demars , Margarita Cano , Laurence Drouilhet , Stéphane Fabre , Bertrand Servin et al.
Plant and Animal Genomes Conference, Jan 2017, San Diego, United States
Communication dans un congrès hal-02785197 v1
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High density genome scan for selection in French sheep

Christina Rochus , Flavie Tortereau , Carole Moreno-Romieux , Gwenola Tosser-Klopp , Bertrand Servin
XXIV. Plant and Animal Genome Conference (PAG), Jan 2016, San Diego, United States
Communication dans un congrès hal-02792842 v1

Finse-scale recombination maps in the Sheep

Morgane Petit , Carole Moreno-Romieux , Bertrand Servin
XXIV PAG - Plant and Animal Genome Conference, Jan 2016, San Diego, United States
Communication dans un congrès hal-01603580 v1
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Disentangling demography and selection effects of cattle domestication - new insights from the 1000 bull genomes project

Simon S. Boitard , Marlies Dolezal , Bertrand Servin , Daniel Fischer , Jared Decker et al.
Annual Meeting of the Society for Molecular Biology and Evolution (SMBE), Jul 2015, Vienne, Austria
Communication dans un congrès hal-02796438 v1

Genome-wide association study for response to [i]Eimeria maxima[/i] challenge in broilers

Edin Hamzic , Bertrand Bed'Hom , Frédéric Herault , Herve Juin , Rachel J Hawken et al.
Plant and Animal Genome, Jan 2015, San Diego, United States
Communication dans un congrès hal-01194130 v1

Fine-scale recombination maps in the Sheep

Morgane Petit , Carole Moreno-Romieux , Bertrand Servin
XV Gordon meeting, Feb 2015, Pise, Italy
Communication dans un congrès hal-01602175 v1
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Le séquençage du génome du porc : apport des nouvelles technologies de séquençage à la génomique et la génétique porcine

Bertrand Servin , Claire Gaillard , Denis Milan , Jean Pierre Bidanel , Juliette Riquet
46. Journées de la Recherche Porcine, Feb 2014, Paris, France
Communication dans un congrès hal-01604152 v1

Detecting selection signatures from population differentiation: results from the sheephapmap and the 1000 bull genomes datasets

Simon S. Boitard , Bertrand Servin , Maria Inès M. I. Fariello Rico , Magali San Cristobal , Aurelien A. Capitan et al.
12.Plant and Animal Genome (PAG), Jan 2014, San Diego, United States
Communication dans un congrès hal-02795900 v1

Transcriptome-wide investigation of genomic imprinting in chicken

Laure Fresard , Sophie Leroux , Bertrand Servin , David Gourichon , Patrice Dehais et al.
22. International Plant and Animal Genome (PAG), Jan 2014, San Diego, United States
Communication dans un congrès hal-01193927 v1
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Combining Genetics Mapping, Selective Sweeps, Genome Re-Requencing and Allele Specific Expression Reveals Several Serious Causative Genes for QTL Regions

Pierre-François Roux , Simon Boitard , Anis Djari , Diane Esquerre , Colette Désert et al.
International Plant & Animal Genome XXII (PAG), Jan 2014, San Diego, United States
Communication dans un congrès hal-01193794 v1

Selection through haplotype differentiation in structured populations

Simon S. Boitard , Maria Inès M. I. Fariello Rico , Magali San Cristobal , Bertrand Servin
Mathematical and Computational Evolutionary Biology, 2013, Montpellier, France
Communication dans un congrès hal-02803582 v1

Detecting selection through haplotype differentiation in structured populations

Simon S. Boitard , Maria Inès M. I. Fariello Rico , Magali San Cristobal , Hugo Naja , Bertrand Servin
Gordon Conference on quantitative genetics and genomics, Jul 2013, Galveston - Texas, United States
Communication dans un congrès hal-02809529 v1

Using haplotype based differentiation tests for detecting soft and incomplete sweeps

Simon S. Boitard , Maria Inès M. I. Fariello Rico , Magali San Cristobal , Bertrand Servin
Mind The Gap 5, Nov 2013, Vienne, Austria
Communication dans un congrès hal-02804219 v1

Detecting selection from differentiation between populations: the FLK and hapFLK approach

Simon S. Boitard , Bertrand Servin , Maria Inès M. I. Fariello Rico , Claude C. Chevalet , Magali San Cristobal et al.
Software and statistical methods for population genetics, 2013, Aussois, France
Communication dans un congrès hal-02804684 v1
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Cartographie fine de régions QTL à l’aide de la puce PorcineSNP60 pour la qualité de la viande en race Large White

Marie-Pierre Sanchez , Thierry Tribout , Nathalie Iannuccelli , Marcel Bouffaud , Bertrand Servin et al.
Journées des Sciences du muscle et technologie de la viansde, Nov 2012, Caen, France
Communication dans un congrès hal-01190243 v1

Fine mapping of production and meat quality QTL in Large White pigs using the PorcineSNP60 Beadchip

Marie-Pierre Sanchez , Thierry Tribout , Nathalie N. Iannuccelli , Marcel M. Bouffaud , Bertrand Servin et al.
EAAP, Aug 2012, Bratislava, Slovakia
Communication dans un congrès hal-02745652 v1
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Genetic and phenotypic fine characterizations of French porcine reference populations

Magali San Cristobal , Simon Boitard , Maria Inès Fariello Rico , Hélène Gilbert , Laurence Liaubet et al.
ISAG, Jul 2012, Cairns, Australia. pp.1
Communication dans un congrès hal-01019125 v1
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A fine genetic analysis of congenital diseases in pig

Sarah Rousseau Rousseau , Nathalie N. Iannuccelli , Eric Pailhoux , Bertrand Servin , Juliette Riquet
33. ISAG Conference of the International Society for Animal Genetics, Jul 2012, Cairns, Australia
Communication dans un congrès hal-02744795 v1
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Recherche de causes génétiques des anomalies congénitales majeures chez le porc

Juliette Riquet , Marie‐josé Mercat , Nathalie Iannuccelli , Bertrand Servin , Eric Pailhoux et al.
43. Journées Recherche Porcine, Feb 2011, Paris, France. pp.7-12
Communication dans un congrès hal-01190211 v1
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Diversité et biologie intégrative : des pistes à explorer pour combler le gap entre diversité génétique et diversité phénotypique

Magali San Cristobal , Simon S. Boitard , Marcel M. Bouffaud , Cécile Canlet , Leonor L. Chaltiel et al.
COLLOQUE FRB : Les Ressources Génétiques (RG) face aux nouveaux enjeux environnementaux, économiques et sociétaux, Sep 2011, Montpellier, France
Communication dans un congrès hal-01000087 v1

SNP selection using sparse PLS

Simon S. Boitard , Benoit Sansas , Bertrand Servin , Magali San Cristobal
9. World Congress on Genetics Applied to Livestock Production, Aug 2010, Leipzig, Germany
Communication dans un congrès hal-02755189 v1

Exploiting non-additive effects in genomic selection: a quadratic quantitative genetics approach

Claude C. Chevalet , Bertrand Servin , Magali San Cristobal
9. World Congress on Genetics Applied to Livestock Production, 2010, Leipzig, Germany. pp.Inconnu
Communication dans un congrès hal-02818213 v1

Modelling RH maps uncertainty and application to the validation of whole genome assemblies.

Bertrand Servin , Sebastien Givry , Thomas Faraut
9th World Congress on Genetics Applied to Livestock Production, 2010, Leipzig, pp.Inconnu
Communication dans un congrès hal-02813656 v1

Detecting selection in population trees: an extension of the Lewontin and Krakauer test with an application to pig

Maxime Bonhomme , Claude C. Chevalet , Bertrand Servin , Simon S. Boitard , Jihad Abdallah et al.
9. World Congress on Genetics Applied to Livestock Production, 2010, Leipzig, Germany
Communication dans un congrès hal-02812781 v1

Utilisation dune puce 60 000 SNP pour cartographier finement des QTL affectant des caractères de production, de résistance aux maladies et de comportement chez les ovins

Carole Moreno-Romieux , Bertrand Servin , Thomas Faraut , Christophe Klopp , Rachel Rupp et al.
16. Rencontres autour des Recherches sur les Ruminants, Dec 2009, Paris, France
Communication dans un congrès hal-02755058 v1

Comparison of genome-wide methods for the detection of selection in subdivided populations

Simon S. Boitard , Maxime Bonhomme , Bertrand Servin , Claude C. Chevalet
12. Congress of the European Society of Evolutionnary Biology, European Society of Evolutionnary Biology (ESEB). INT., Aug 2009, Turino, Italy
Communication dans un congrès hal-02819487 v1

Présentation du projet ANR 2008 SheepSNPQTL : utilisation de la puce 60 000 SNP pour la cartographie fine de QTL chez les ovins.

Carole Moreno-Romieux , Andres Legarra , David Robelin , Christèle Robert-Granié , Rachel Rupp et al.
Journées Scientifiques, Département de Génétique Animale, Apr 2008, Lacanau, France
Communication dans un congrès hal-02813290 v1

Modéliser l'incertitude des cartes d'hybrides irradiés : application à la validation d'assemblage de génomes complets.

Bertrand Servin , Thomas Faraut , Sebastien Givry
Journées Scientifiques, Département de Génétique Animale, Apr 2008, Lacanau
Communication dans un congrès hal-02754669 v1

Caractérisation de populations à partir de l'analyse de régions chromosomiques potentiellement sélectionnées en comparaison à la diversité neutre : étude conjointe de lignées expérimentales de poules et des quatres sous-populations ovines de race Lacaune

Isabelle Palhiere Palhière , Valérie Loywyck , Magali San Cristobal , Denis Laloë , Yves Amigues et al.
7. Colloque National - Les Ressources Génétiques à l'heure des Génomes, Oct 2008, Strasbourg, France
Communication dans un congrès hal-02755974 v1

Efficient multipoint analysis of assocation studies.

Bertrand Servin , P. Scheet , M. Stephens
The American Society of Human Genetics 55th Annual Meeting, 9-13 october 2006, Oct 2006, New-Orleans, pp.Inconnu
Communication dans un congrès hal-02813898 v1

Results of three cycles of marker-assisted backcross in pepper for resistance QTLs to Phytophthora capsici

Véronique Lefebvre , A. Thabuis , Bertrand Servin , A.M. Daubèze , Patrick Signoret et al.
12. EUCARPIA Meeting, May 2004, Noordwijk, Netherlands
Communication dans un congrès hal-02760351 v1

Introgression de gènes ou de QTL

L. Moreau , Bertrand Servin , Agnes Bouchez , Frederic F. Hospital
Séminaire du Département de Génétique Animale INRA, Sep 2001, Batz-sur-Mer, France
Communication dans un congrès hal-02759533 v1