Bertrand Servin

Présentation

I am a researcher in statistical genetics at the GenPhySE INRAE Lab. My research interests include population genetics, quantitative genetics and genomics. My group develops new methods for the analysis of large scale genetic data with a particular interest in understanding the evolution of livestock species

Publications

Article dans une revue (65)

Sequence‐Based Multi Ancestry Association Study Reveals the Polygenic Architecture of Varroa destructor Resistance in the Honeybee Apis mellifera Sonia Eynard,Fanny Mondet,Benjamin Basso,Olivier Bouchez,Yves Le Conteet al. Molecular Ecology, 2025, 34 (3), ⟨10.1111/mec.17637⟩ Article dans une revue hal-04866824v1
Inferring Domestic Goat Demographic History Through Ancient Genome Imputation Jolijn Erven,Alice Etourneau,Marjan Mashkour,Mahesh Neupane,Phillipe Bardouet al. Genome Biology and Evolution, 2025, 17 (11), ⟨10.1093/gbe/evaf181⟩ Article dans une revue hal-05393593v1
Genome landscape and genetic architecture of recombination in domestic goats (Capra hircus) Alice Etourneau,Rachel Rupp,Bertrand Servin Genetics Selection Evolution, 2025, 57 (1), pp.57. ⟨10.1186/s12711-025-01001-0⟩ Article dans une revue hal-05321864v1
SMARTER-database: a tool to integrate SNP array datasets for sheep and goat breeds Paolo Cozzi,Arianna Manunza,Johanna Ramirez-Diaz,Valentina Tsartsianidou,Konstantinos Gkagkavouziset al. Gigabyte, 2024, 2024, pp.1-15. ⟨10.46471/gigabyte.139⟩ Article dans une revue hal-05006094v1
The genetic architecture of recombination rates is polygenic and differs between the sexes in wild house sparrows ( Passer domesticus ) John Mcauley,Bertrand Servin,Hamish Burnett,Cathrine Brekke,Lucy Peterset al. Molecular Biology and Evolution, 2024, 41 (9), ⟨10.1093/molbev/msae179⟩ Article dans une revue hal-04681764v2
Comparison of genomic-enabled cross selection criteria for the improvement of inbred line breeding populations Alice Danguy Des Deserts,Nicolas Durand,Bertrand Servin,Ellen Goudemand-Dugué,Jean-Marc Alliotet al. G3, 2023, 13 (11), 15 p. ⟨10.1093/g3journal/jkad195⟩ Article dans une revue hal-04214520v1
The black honey bee genome: insights on specific structural elements and a first step towards pan-genomes Sonia Eynard,Christophe Klopp,Kamila Canale-Tabet,William Marande,Céline Vandecasteeleet al. Genetics Selection Evolution, 2023, 56 (1), pp.51. ⟨10.1101/2023.12.06.570386⟩ Article dans une revue hal-04473386v2
A meta-analysis of genetic and phenotypic diversity of European local pig breeds reveals genomic regions associated with breed differentiation for production traits Klavdija Poklukar,Camille Mestre,Martin Škrlep,Marjeta Čandek-Potokar,Cristina Oviloet al. Genetics Selection Evolution, 2023, 55 (1), pp.88. ⟨10.1186/s12711-023-00858-3⟩ Article dans une revue hal-04329951v1
Reconstructing queen genotypes by pool sequencing colonies in eusocial insects: Statistical Methods and their application to honeybee Sonia E Eynard,Alain Vignal,Benjamin Basso,Kamila Canale‐tabet,Yves Le Conteet al. Molecular Ecology Resources, 2022, 22 (8), pp.3035-3048. ⟨10.1111/1755-0998.13685⟩ Article dans une revue hal-03855231v1
Genome‐wide analysis of hybridization in wild boar populations reveals adaptive introgression from domestic pig Nicolas Mary,Nathalie Iannuccelli,Geoffrey Petit,Nathalie Bonnet,Alain Pintonet al. Evolutionary Applications, 2022, 15 (7), pp.1115-1128. ⟨10.1111/eva.13432⟩ Article dans une revue hal-03740011v1
Two quantitative trait loci are associated with recapping of Varroa destructor ‐infested brood cells in Apis mellifera mellifera M. Guichard,B. Dainat,S. Eynard,Alain Vignal,Bertrand Servinet al. Animal Genetics, 2022, 53 (1), pp.156-160. ⟨10.1111/age.13150⟩ Article dans une revue hal-03540810v1
Complex population structure and haplotype patterns in the Western European honey bee from sequencing a large panel of haploid drones David Wragg,Sonia Eynard,Benjamin B. Basso,Kamila Canale-Tabet,Emmanuelle Labartheet al. Molecular Ecology Resources, 2022, 22 (8), pp.3068-3086. ⟨10.1111/1755-0998.13665⟩ Article dans une revue hal-03807491v1
MOSAR -Méthodes et Outils pour la Sélection d'Abeilles Résistantes à Varroa Benjamin B. Basso,Sonia E. Eynard,Alain Vignal,Maxime Beguin,Anne-Laure Guiraoet al. Innovations Agronomiques, 2021, 82, pp.229-245. ⟨10.15454/zna6-4g12⟩ Article dans une revue hal-03159732v1
Gene Banks as Reservoirs to Detect Recent Selection: The Example of the Asturiana de los Valles Bovine Breed Simon Boitard,Cyriel Paris,Natalia Sevane,Bertrand Servin,Kenza Bazi-Kabbajet al. Frontiers in Genetics, 2021, 12, ⟨10.3389/fgene.2021.575405⟩ Article dans une revue hal-03357162v1
Local adaptations of Mediterranean sheep and goats through an integrative approach Bruno Serranito,Marco Cavalazzi,Pablo Vidal,Dominique Taurisson-Mouret,Elena Cianiet al. Scientific Reports, 2021, 11, pp.21363. ⟨10.1038/s41598-021-00682-z⟩ Article dans une revue hal-03421679v1
Local adaptations of Mediterranean sheep and goats through an integrative approach Éric Rouvellac,Serranito Bruno,Marco Cavalazzi,Pablo Vidal,Dominique Taurisson-Mouretet al. Scientific Reports, 2021, 11 (21363 (2021)), https://doi.org/10.1038/s41598-021-00682-z Article dans une revue hal-04973085v1
Genomic Uniqueness of Local Sheep Breeds From Morocco Abdessamad Ouhrouch,Simon Boitard,Frédéric Boyer,Bertrand Servin,Anne da Silvaet al. Frontiers in Genetics, 2021, 12, pp.723599. ⟨10.3389/fgene.2021.723599⟩ Article dans une revue hal-03591256v1
Identification of quantitative trait loci associated with calmness and gentleness in honey bees using whole‐genome sequences Matthieu Guichard,Benjamin Dainat,Sonia Eynard,Alain Vignal,Bertrand Servinet al. Animal Genetics, 2021, pp.13070. ⟨10.1111/age.13070⟩ Article dans une revue hal-03252574v1
Evolution of recombination landscapes in diverging populations of bread wheat Alice Danguy Des Déserts,Sophie Bouchet,Pierre Sourdille,Bertrand Servin Genome Biology and Evolution, 2021, 13 (8), ⟨10.1093/gbe/evab152⟩ Article dans une revue hal-03290674v1
Analyse de l'hybridation dans les populations françaises de sangliers à l'aide de données de génotypage pangénomique Nicolas Mary,Nathalie Iannuccelli,Geoffrey Petit,Nathalie Bonnet,Alain Pintonet al. Journées de la Recherche Porcine en France, 2021 Article dans une revue hal-03482640v1
Evaluation of Suppressed Mite Reproduction (SMR) Reveals Potential for Varroa Resistance in European Honey Bees (Apis mellifera L.) Fanny Mondet,Melanie Parejo,Marina Meixner,Cecilia Costa,Per Krygeret al. Insects, 2020, 11 (9), pp.595. ⟨10.3390/insects11090595⟩ Article dans une revue hal-02933234v1
Descriptive analysis of the varroa non-reproduction trait in honey bee colonies and association with other traits related to varroa resistance Sonia E. Eynard,Christina Sann,Benjamin Basso,Anne-Laure Guirao,Yves Le Conteet al. Insects, 2020, 11 (8), pp.1-16. ⟨10.3390/insects11080492⟩ Article dans une revue hal-02937567v1
Genetic diversity analysis of French goat populations reveals selective sweeps involved in their differentiation Claire Oget,Bertrand Servin,Isabelle Palhiere Animal Genetics, 2019, 50 (1), pp.54-63. ⟨10.1111/age.12752⟩ Article dans une revue hal-02624348v1
Inference of Selection from Genetic Time Series Using Various Parametric Approximations to the Wright-Fisher Model Cyriel Paris,Bertrand Servin,Simon Boitard G3, 2019, 9 (12), pp.4073-4086. ⟨10.1534/g3.119.400778⟩ Article dans une revue hal-02624801v1
Meta-analysis of genome-wide association studies for cattle stature identifies common genes that regulate body size in mammals Aniek C. Bouwman,Hans D. Daetwyler,Amanda J. Chamberlain,Carla Hurtado Ponce,Mehdi Sargolzaeiet al. Nature Genetics, 2018, 50 (3), pp.362-367. ⟨10.1038/s41588-018-0056-5⟩ Article dans une revue hal-02628780v1
Revealing the selection history of adaptive loci using genome-wide scans for selection: an example from domestic sheep Christina Rochus,Flavie Tortereau,Florence Plisson-Petit,Gwendal Restoux,Carole Moreno-Romieuxet al. BMC Genomics, 2018, 19 (1), pp.Non Paginé. ⟨10.1186/s12864-018-4447-x⟩ Article dans une revue hal-02626935v1
Signatures of selection and environmental adaptation across the goat genome post-domestication Francesca Bertolini,Bertrand Servin,Andrea Talenti,Estelle Rochat,Eui Soo Kimet al. Genetics Selection Evolution, 2018, 50 (1), pp.57. ⟨10.1186/s12711-018-0421-y⟩ Article dans une revue hal-02405277v1
Genome-wide SNP profiling of worldwide goat populations reveals strong partitioning of diversity and highlights post-domestication migration routes Licia Colli,Marco Milanesi,Andrea Talenti,Francesca Bertolini,Minhui Chenet al. Genetics Selection Evolution, 2018, 50 (1), pp.58. ⟨10.1186/s12711-018-0422-x⟩ Article dans une revue hal-02405280v1
Convergent genomic signatures of domestication in sheep and goats Florian Alberto,Frédéric Boyer,Pablo Orozco-Terwengel,Ian Streeter,Bertrand Servinet al. Nature Communications, 2018, 9 (1), pp.813. ⟨10.1038/s41467-018-03206-y⟩ Article dans une revue cea-01875703v1
Variation in Recombination Rate and Its Genetic Determinism in Sheep Populations Morgane Petit,Jean-Michel Astruc,Julien Sarry,Laurence Drouilhet,Stéphane Fabreet al. Genetics, 2017, 207 (2), pp.767-784. ⟨10.1534/genetics.117.300123⟩ Article dans une revue hal-02624341v1
Genome-Wide Identification of the Mutation Underlying Fleece Variation and Discriminating Ancestral Hairy Species from Modern Woolly Sheep Julie Demars,Margarita Cano,Laurence Drouilhet,Florence Plisson-Petit,Philippe Bardouet al. Molecular Biology and Evolution, 2017, 34 (7), pp.1722-1729. ⟨10.1093/molbev/msx114⟩ Article dans une revue hal-01608205v1
High-Resolution Mapping of Crossover Events in the Hexaploid Wheat Genome Suggests a Universal Recombination Mechanism Benoit Darrier,Hélène Rimbert,François Balfourier,Lise Pingault,Ambre-Aurore Josselinet al. Genetics, 2017, 206 (3), pp.1373-1388. ⟨10.1534/genetics.116.196014⟩ Article dans une revue hal-04686468v1
Development of a SNP panel dedicated to parentage assignment in French sheep populations Flavie Tortereau,Carole Moreno-Romieux,Gwenola Tosser-Klopp,Bertrand Servin,Jérôme Raoul BMC Genetics, 2017, 18 (1), Non paginé. ⟨10.1186/s12863-017-0518-2⟩ Article dans une revue hal-01605129v1
Uncovering Adaptation from Sequence Data : Lessons from Genome Resequencing of Four Cattle Breeds Simon Boitard,Mekki Boussaha,Aurelien Capitan,Dominique Rocha,Bertrand Servin Genetics, 2016, 203 (1), pp.433-450. ⟨10.1534/genetics.115.181594⟩ Article dans une revue hal-01533825v1
Large-scale investigation of response to [i]Eimeria Maxima[/i] challenge in broilers Edin Hamzic,Bertrand Bed'Hom,Herve Juin,R Hawken,M. S. Abrahamsenet al. Journal of Animal Science, 2015, 93 (4), pp.1830-1840. ⟨10.2527/jas2014-8592⟩ Article dans une revue hal-01194093v1
Combined QTL and selective sweep mappings with coding SNP annotation and cis-eQTL analysis revealed PARK2 and JAG2 as new candidate genes for adiposity regulation. Pierre-François Roux,Simon Boitard,Anne Blum,Brian Parks,Alexandra Montagneret al. G3, 2015, 5, pp.517-529. ⟨10.1534/g3.115.016865⟩ Article dans une revue hal-01194040v1
Genome Scan for Selection in Structured Layer Chicken Populations Exploiting Linkage Disequilibrium Information Mahmood Gholami,Christian Reimer,Malena Erbe,Rudolf Preisinger,Annett Weigendet al. PLoS ONE, 2015, 10 (7), pp.1-15. ⟨10.1371/journal.pone.0130497⟩ Article dans une revue hal-02631302v1
Spatio-temporal gene expression profiling during in vivo early ovarian folliculogenesis: integrated transcriptomic study and molecular signature of early follicular growth Agnès Bonnet,Bertrand Servin,Philippe Mulsant,Béatrice Mandon-Pepin PLoS ONE, 2015, 5 (November), pp.1-25. ⟨10.1371/journal.pone.0141482⟩ Article dans une revue hal-02634306v1
Genome-wide association study and biological pathway analysis of the Eimeria maxima response in broilers Edin Hamzić,Bart Buitenhuis,Frédéric Hérault,Rachel Hawken,Mitchel S. Abrahamsenet al. Genetics Selection Evolution, 2015, 47 (1), pp.91. ⟨10.1186/s12711-015-0170-0⟩ Article dans une revue hal-01341325v1
Selection signatures in worldwide sheep populations María Inés Fariello,Bertrand Servin,Gwenola Tosser-Klopp,Rachel Rupp,Carole Moreno-Romieuxet al. PLoS ONE, 2014, 9 (8), pp.1-12. ⟨10.1371/journal.pone.0103813⟩ Article dans une revue hal-02640427v1
The sheep genome illuminates biology of the rumen and lipid metabolism Yu Jiang,Min Xie,Wenbin Chen,Richard Talbot,Jillian F. Maddoxet al. Science, 2014, 344 (6188), pp.1168-1173. ⟨10.1126/science.1252806⟩ Article dans une revue hal-02635391v1
A genome-wide association study of production traits in a commercial population of Large White pigs: evidence of haplotypes affecting meat quality Marie-Pierre Sanchez,Thierry Tribout,Nathalie Iannuccelli,Marcel Bouffaud,Bertrand Servinet al. Genetics Selection Evolution, 2014, 46 (1), pp.1-12. ⟨10.1186/1297-9686-46-12⟩ Article dans une revue hal-01193779v1
Evolutionary origin of Bone Morphogenetic Protein 15 and growth and differentiation factor 9 and differential selective pressure between mono- and polyovulating species Olivier Monestier,Bertrand Servin,Sylvain Auclair,Thomas Bourquard,Anne Pouponet al. Biology of Reproduction, 2014, 91 (4), pp.1-13. ⟨10.1095/biolreprod.114.119735⟩ Article dans une revue hal-01129871v1
An update of the goat genome assembly using dense radiation hybrid maps allows detailed analysis of evolutionary rearrangements in Bovidae Xiaoyong Du,Bertrand Servin,James E. Womack,Jianhua Cao,Mei Yuet al. BMC Genomics, 2014, 15, ⟨10.1186/1471-2164-15-625⟩ Article dans une revue hal-02631615v1
Transcriptome-wide investigation of genomic imprinting in chicken Laure Fresard,Sophie Leroux,Bertrand Servin,David Gourichon,Patrice Dehaiset al. Nucleic Acids Research, 2014, 42 (6), pp.3768-3782. ⟨10.1093/nar/gkt1390⟩ Article dans une revue hal-01019569v1
Detecting signatures of selection through haplotype differentiation among hierarchically structured populations. María Inés Fariello,Simon Boitard,Hugo Naya,Magali San Cristobal,Bertrand Servin Genetics, 2013, 193 (3), pp.929-41. ⟨10.1534/genetics.112.147231⟩ Article dans une revue hal-00842696v1
A genome-wide association study points out the causal implication of SOX9 in the sex-reversal phenotype in XX pigs Sarah Rousseau Rousseau,Nathalie N. Iannuccelli,Marie-Jose Mercat-Gernigon Mercat,Claire Naylies,Jean-Claude J.-C. Thoulyet al. PLoS ONE, 2013, 8 (11), pp.1-11. ⟨10.1371/journal.pone.0079882⟩ Article dans une revue hal-01004777v1
Adaptation of maize to temperate climates: mid-density genome-wide association genetics and diversity patterns reveal key genomic regions, with a major contribution of the Vgt2 (ZCN8) locus Sophie Bouchet,Bertrand Servin,Pascal Bertin,Delphine D. Madur,Valerie V. Combeset al. PLoS ONE, 2013, 8 (8), ⟨10.1371/journal.pone.0071377⟩ Article dans une revue hal-02652500v1
Sequencing and automated whole-genome optical mapping of the genome of a domestic goat (Capra hircus) Yang Dong,Min Xie,Yu Jiang,Nianqing Xiao,Xiaoyong Duet al. Nature Biotechnology, 2013, 31 (2), pp.135-141. ⟨10.1038/nbt.2478⟩ Article dans une revue hal-02651460v1
Genome-wide analysis of the world’s sheep breeds reveals high levels of historic mixture and strong recent selection James W. Kijas,Johannes A. Lenstra,Ben Hayes,Simon S. Boitard,Laercio R. Porto Netoet al. PLoS Biology, 2012, 10, online (2), Non paginé. ⟨10.1371/journal.pbio.1001258⟩ Article dans une revue hal-02652546v1
High-resolution autosomal radiation hybrid maps of the pig genome and their contribution to the genome sequence assembly Bertrand Servin,Thomas Faraut,Nathalie N. Iannuccelli,Diana Zelenika,Denis Milan BMC Genomics, 2012, 13, online (november), Non paginé. ⟨10.1186/1471-2164-13-585⟩ Article dans une revue hal-02644217v1
Fine mapping of complex traits in non-model species: using next generation sequencing and advanced intercross lines in Japanese quail Laure Fresard,Sophie Leroux,Patrice Dehais,Bertrand Servin,Hélène Gilbertet al. BMC Genomics, 2012, 13, online (october), Non paginé. ⟨10.1186/1471-2164-13-551⟩ Article dans une revue hal-01129669v1
Analyses of pig genomes provide insight into porcine demography and evolution Martien A. M. Groenen,Alan L. Archibald,Hirohide Uenishi,Christopher K. Tuggle,Yasuhiro Takeuchiet al. Nature, 2012, 491 (7426), pp.393-398. ⟨10.1038/nature11622⟩ Article dans une revue cea-00880676v1
A high density recombination map of the pig reveals a correlation between sex-specific recombination and GC content Flavie Tortereau,Bertrand Servin,Laurent Frantz,Hendrik-Jan Megens,Denis Milanet al. BMC Genomics, 2012, 13, online (november), Non paginé. ⟨10.1186/1471-2164-13-586⟩ Article dans une revue hal-02646895v1
A locally congenic backcross design in pig: a new regional fine QTL mapping approach miming congenic strains used in mouse Juliette Riquet,Hélène Gilbert,Bertrand Servin,Marie-Pierre Sanchez,Nathalie N. Iannuccelliet al. BMC Genetics, 2011, 12, online (january), pp.1-9. ⟨10.1186/1471-2156-12-6⟩ Article dans une revue hal-01000531v1
Detecting selection in population trees: the Lewontin and Krakauer test extended. Maxime Bonhomme,Claude Chevalet,Bertrand Servin,Simon Boitard,Jihad Abdallahet al. Genetics, 2010, 186 (1), pp.241-62. ⟨10.1534/genetics.104.117275⟩ Article dans une revue hal-00842515v1
Statistical confidence measures for genome maps: application to the validation of genome assemblies Bertrand Servin,Simon de Givry,Thomas Faraut Bioinformatics, 2010, 26 (24), pp.3035-3042. ⟨10.1093/bioinformatics/btq598⟩ Article dans une revue hal-02665786v1
Genetic variability and linkage disequilibrium patterns in the bovine DNAJA1 gene Amandine Marty,Yves Amigues,Bertrand Servin,Gilles Renand,Hubert H. Levézielet al. Molecular Biotechnology, 2010, 44 (3), pp.190-197. ⟨10.1007/s12033-009-9228-y⟩ Article dans une revue istex hal-01193442v1
Detecting Selection in Population Trees: The Lewontin and Krakauer Test Extended Maxime Bonhomme,Claude C. Chevalet,Bertrand Servin,Simon S. Boitard,Jihad Abdallahet al. Genetics, 2010, 186 (1), pp.241-262. ⟨10.1534/genetics.110.117275⟩ Article dans une revue hal-02655907v1
Contribution of Radiation Hybrids to Genome Mapping in Domestic Animals. Thomas Faraut,Simon de Givry,Christophe Hitte,Yvette Lahbib Mansais,Mireille Morissonet al. Cytogenetic and Genome Research, 2009, 126 (1-2), pp.21-33. ⟨10.1159/000245904⟩ Article dans une revue inserm-00442389v1
Genome sequence of the -rhizobium Cupriavidus taiwanensis and comparative genomics of rhizobia Claire Amadou,Géraldine Pascal,Sophie Mangenot,Michelle Glew,Cyril Bontempset al. Genome Research, 2008, 18 (9), pp.1472 - 1483. ⟨10.1101/gr.076448.108⟩ Article dans une revue hal-01655676v1
Imputation-based analysis of association studies: candidate regions and quantitative traits Bertrand Servin,Matthew Stephens PLoS Genetics, 2007, 3, pp.1296-1308. ⟨10.1371/journal.pgen.0030114⟩ Article dans une revue hal-02662573v1
Marker-assisted introgression of 4 Phytophthora capsici resistance QTL alleles into a bell pepper line: validation of additive and epistatic effects A. Thabuis,Alain Palloix,Bertrand Servin,A.M. Daubèze,Patrick Signoretet al. Molecular Breeding, 2004, 14, pp.9-20 Article dans une revue hal-02671845v1
Toward a Theory of Marker-Assisted Gene Pyramiding Bertrand Servin,Olivier C. Martin,Marc Mézard,Frédéric Hospital Genetics, 2004, 168, pp.513-523. ⟨10.1534/genetics.103.023358⟩ Article dans une revue hal-00009229v1
Marker-assisted introgression of five QTLs controlling fruit quality traits into three tomato lines revealed interactions between QTLs and genetic backgrounds L. Lecomte,Philippe Duffe,Michel Buret,Bertrand Servin,Frederic F. Hospitalet al. TAG Theoretical and Applied Genetics, 2004, 109, pp.658-668. ⟨10.1007/s00122-004-1674-0⟩ Article dans une revue istex hal-02675933v1

Pré-publication, Document de travail (10)

SelNeTime: a python package inferring effective population size and selection intensity from genomic time series data Mathieu Uhl,Miguel Navascués,Simon Boitard,Bertrand Servin 2024 Pré-publication, Document de travail hal-04784414v1
Sequence-based genome-wide association studies reveal the polygenic architecture of Varroa destructor resistance in Western honey bees Apis mellifera Sonia Eynard,Fanny Mondet,Benjamin Basso,Olivier Bouchez,Tabatha Bulachet al. 2024 Pré-publication, Document de travail hal-04493727v1
Sex-differences in the genetic architecture of individual recombination rates in wild house sparrows ( Passer domesticus ) John Mcauley,Bertrand Servin,Lucy Peters,Ingerid Hagen,Alina Niskanenet al. 2023 Pré-publication, Document de travail hal-04186240v1
Discovering genomic regions associated with the phenotypic differentiation of European local pig breeds Klavdija Poklukar,Camille Mestre,Martin Škrlep,Marjeta Čandek-Potokar,Cristina Oviloet al. 2023 Pré-publication, Document de travail hal-04186069v1
Complex population structure and haplotype patterns in Western Europe honey bee from sequencing a large panel of haploid drones David Wragg,Sonia E Eynard,Benjamin B. Basso,Kamila Canale-Tabet,Emmanuelle Labartheet al. 2021 Pré-publication, Document de travail (preprint/prepublication) hal-03482707v1
Evolution of recombination landscapes in diverging populations of bread wheat Alice Danguy Des Déserts,Sophie Bouchet,Pierre Sourdille,Bertrand Servin 2021 Pré-publication, Document de travail (preprint/prepublication) hal-03244446v1
Multiple adaptive solutions to face climatic constraints: novel insights in the debate over the role of convergence in local adaptation Badr Benjelloun,Kevin Leempoel,Frédéric Boyer,Sylvie Stucki,Ian Streeteret al. 2023 Pré-publication, Document de travail hal-04186277v1
From group to individual - Genotyping by pool sequencing eusocial colonies Sonia Eynard,Alain Vignal,Benjamin B. Basso,Yves Le Conte,Axel Decourtyeet al. 2021 Pré-publication, Document de travail hal-03482633v1
Variation in recombination rate and its genetic determinism in sheep ( Ovis Aries ) populations from combining multiple genome-wide datasets Morgane Petit,Jean-Michel Astruc,Julien Sarry,Laurence Drouilhet,Stéphane Fabreet al. 2017 Pré-publication, Document de travail hal-02936802v1
High density genome scan for selection signatures in French sheep reveals allelic heterogeneity and introgression at adaptive loci Christina Marie Rochus,Flavie Tortereau,Bertrand Servin,Florence Plisson-Petit,Gwendal Restouxet al. 2024 Pré-publication, Document de travail (preprint/prepublication) hal-04746565v1

HDR (1)

Contributions à la modélisation statistique de données génétiques Bertrand Servin Génétique. Université de Toulouse, 2020 HDR tel-02960389v1

Logiciel (4)

PARSEC Cervin Guyomar,Bertrand Servin 2025, ⟨swh:1:dir:19771d312143bd56d9bafaf23abe66e26bf5216d;origin=https://github.com/cguyomar/PARSEC;visit=swh:1:snp:9ab8a5f497792a7fb635122df8ee1033dece5193;anchor=swh:1:rev:c4a9a0f518e2892904628e80222657fc6612f1f8⟩ Logiciel hal-04877682v1
YAPP Bertrand Servin 2025, ⟨swh:1:dir:7aa8d101fc190372b80e1b64536966a609b5f48d;origin=https://pypi.org/project/yappgen/;visit=swh:1:snp:c44498b9837567c7e78240b4ac5ff5a6f80ce640;anchor=swh:1:rel:6febb8168136ee26a864e30b9f8f0a025fb5acd2⟩ Logiciel hal-04783986v1
compareHMM Cyriel Paris,Bertrand Servin,Simon Boitard 2019 Logiciel hal-02920484v1
hapflk Bertrand Servin,Simon S. Boitard,Maria Inès M. I. Fariello Rico 2013 Logiciel hal-02803185v1

Communication dans un congrès (66)

Modelling genetic and epigenetic selection signatures from pool sequencing. Sonia E Eynard,Kossi-Julien Kowou,Cécile Donnadieu,Loïc Flatres-Grall,Carole Iampietroet al. Environmental and Agronomical Genomics Symposium, france génomique; greenomics, Feb 2026, Paris, France Communication dans un congrès hal-05538015v1
Epigenetic time series analysis Kossi-Julien Kowou,Sonia E Eynard,Bertrand Servin Epiphase, Nov 2025, Toulouse, France Communication dans un congrès hal-05538051v1
Improving genomic prediction by integrating population and quantitative genetics Elise Tourrette,Bertrand Servin Séminaire du réseau R2D2, Oct 2025, Poitiers, France Communication dans un congrès hal-05364900v1
Inferring demography and selection from genomic time series data Paul Bunel,Mathieu Uhl,Miguel de Navascués,Bertrand Servin,Simon Boitard Webinaire TIMe-ID, Jun 2025, Online, France Communication dans un congrès hal-05107536v1
A Bayesian approach to characterize the distribution of adaptive effects from multiple population data Lucy Peters,Bertrand Servin PopGroup 57, University of St-Andrews, Jan 2024, St-Andrews (Écosse), United Kingdom Communication dans un congrès hal-05006397v1
Joint distribution of adaptive and quantitative effects of QTLs affecting a complex trait under selection Elise Tourrette,Bertrand Servin Séminaire du réseau R2D2, Nov 2024, Lyon, France Communication dans un congrès hal-05364891v1
Real-time monitoring of genetic diversity in animal populations: the RAGEMO project Coralie Danchin-Burge,Isabelle Palhiere,Bertrand Servin,Gwendal Restoux Book of Abstracts of the 74. Annual Meeting of the European Federation of Animal Science, INRAE, Aug 2023, Lyon, France. pp.383 Communication dans un congrès hal-04199749v1
Genotyping a thousand animals using low coverage sequencing and imputation Cervin Guyomar,Denis Milan,Christophe Klopp,Cécile Donnadieu,Bertrand Servinet al. Genotoul biostat bioinfo day, Genotoul, Nov 2023, Toulouse, France Communication dans un congrès hal-04669286v1
Statistics for an accurate genome wide association study on Varroa resistance trait in a French honeybee Sonia E Eynard,A. Vignal,Yves Agez,Benjamin B. Basso,Olivier Bouchezet al. World Congress on Genetics Applied to Livestock Production, Jul 2022, Rotterdam, Netherlands Communication dans un congrès hal-03859236v1
Sex differences in recombination maps are associated with differential hotspot usage in sheep Héléna Vassilief,Mohamed Id Bella,Flavie Tortereau,Dominique Hazard,Thomas Farautet al. World Congress on Genetics Applied to Livestock Production, Jul 2022, Rotterdam, Netherlands. pp.861-864, ⟨10.3920/978-90-8686-940-4_202⟩ Communication dans un congrès hal-04065264v1
Evolution of recombination landscapes in diverging populations of bread wheat Alice Danguy Des Deserts,Sophie Bouchet,Pierre Sourdille,Bertrand Servin IWGSC (International Wheat Genome Sequencing Consortium ), Mar 2022, Webinar, France Communication dans un congrès hal-04353824v1
Genotyping By Pool Sequencing Eusocial Colonies and Its Applications to Honeybee Sonia E Eynard,Alain Vignal,Benjamin B. Basso,Yves Le Conte,Kamila Tabetet al. XXVIIII Plant and Animal Genome, Jan 2022, San Diego, France Communication dans un congrès hal-04473343v1
GENOME WIDE ASSOCIATION STUDY ON VARROA RESISTANCE TRAITS IN FRENCH HONEYBEE POPULATIONS Sonia E. Eynard,Alain Vignal,Benjamin B. Basso,Olivier Bouchez,Tabatha Bulachet al. 9th European Congress of Apidology, Sep 2022, Belgrade, Serbia Communication dans un congrès hal-03855289v1
In search of the honey bee centromeres: regions with tandem repeats high at content and low recombination rates Alain Vignal,Sonia E Eynard,Christophe Klopp,Bertrand Servin,Kamila Canale-Tabetet al. 9th European Congress of Apidology, Sep 2022, Belgrade, Serbia Communication dans un congrès hal-03855207v1
Suivi génomique des origines raciales lors de la création d'une lignée synthétique porcine Audrey Ganteil,Bertrand Servin,Vincent Cousin,Carolina Garcia-Baccino,Bruno Ligonescheet al. 54ème Journées de la recherche porcine, Feb 2022, Paris, France Communication dans un congrès hal-03552040v1
Statistics for an accurate genome wide association study on Varroa resistance trait in a French honeybee Sonia E Eynard,Alain Vignal,Benjamin B. Basso,Olivier Bouchez,Tabatha Bulachet al. 9 Congress of Apidology (EurBee), Sep 2022, Berlgrade, Serbia Communication dans un congrès hal-05208134v1
Statistical models for the genetic characterisation of honeybee colonies from whole genome pool sequencing data. Sonia E Eynard,Alain Vignal,Christina Sann,Fanny Mondet,Benjamin B. Bassoet al. PopGroup 54, Jan 2021, Online, France Communication dans un congrès hal-04473366v1
European Honeybee Subspecies Genomes at the Individual and Population Levels Alain Vignal,Benjamin Basso,Kaspar Bienefeld,Kamila Canale-Tabet,Cecilia Costaet al. Plant and Animal Genome, Sep 2020, San Diego, United States Communication dans un congrès hal-02938071v1
Statistical Imputation of Queen Genotype from Pool Sequencing of Workers Bertrand Servin,Sonia Eynard,Fanny Mondet,Lucie Genestout,Olivier Bouchezet al. PLant and Animal Genome, Jan 2020, San Diego, United States Communication dans un congrès hal-02938108v1
SMARTER EU project: SMAll RuminanTs breeding for efficiency and resilience Carole Moreno-Romieux,J.J. Arranz,J.M. Astruc,D. Berry,T. Byrneet al. 71st Annual Meeting of the European Federation of Animal Science, 2020, Virtual, Portugal Communication dans un congrès hal-03292977v1
Inference of selection from genetic time series using various parametric approximations to the Wright-Fisher model Cyriel Paris,Bertrand Servin,Simon Boitard Workshop ’Evolutionary genomics and life history traits’, labex CeMeb, Oct 2019, Montpellier, France Communication dans un congrès hal-02921834v1
Characterisation of the genotype of honey bee colonies from pool sequences Sonia Eynard,Christina Sann,Fanny Mondet,Benjamin Basso,Kamila Canale-Tabetet al. 46. APIMONDIA - International Apicultural Congress, Sep 2019, Montreal, Canada Communication dans un congrès hal-02789560v1
BeeStrong : towards a genomic tool for the selection of varroa resistant honey bees Christina Sann,Yannick Poquet,Benjamin B. Basso,Sonia Eynard,Bertrand Servinet al. 46. APIMONDIA - International Apicultural Congress, Sep 2019, Montreal, Canada Communication dans un congrès hal-02788639v1
Annotation of selection signatures in the bovine breed Asturiana de Valles Cyriel Paris,Simon Boitard,Bertrand Servin,Natalia Sevane,Susana Dunner 70. Annual Meeting of the European Association for Animal Production (EAAP), Aug 2019, Ghent, Belgium. 717 p Communication dans un congrès hal-02735190v1
INRA in TREASURE project. Activities and results Bénédicte Lebret,Florence Garcia-Launay,Ludovic Brossard,Justine Faure,Bertrand Servinet al. TREASURE congerence, Feb 2019, Ljubljana, Slovenia Communication dans un congrès hal-02790935v1
De novo genome assembly of a western European Apis mellifera mellifera black bee Alain Vignal,Sonia E Eynard,Christophe Klopp,Kamila Canale Tabet,William Marandeet al. Apimondia, Sep 2019, Montréal, Canada Communication dans un congrès hal-04796454v1
The analysis of sheep and goat genomes reveals new biological mechanisms explaining the variation of Mendelian and complex phenotypes Gwenola Tosser-Klopp,Julie Demars,Laurence Drouilhet,Stéphane Fabre,Thomas Farautet al. Séminaire mensuel (CRAG), Nov 2018, Barcelone, Spain Communication dans un congrès hal-02785242v1
BeeStrong: towards a genomic tool for the selection of Varroa resistant honey bees Christina Sann,Yannick Poquet,Benjamin Basso,Fanny Mondet,Sonia Eynardet al. 8. Congress of Apidology (EurBee 8), Sep 2018, Ghent, Belgium Communication dans un congrès hal-02786490v1
De novo genome assembly of a western European Apis mellifera mellifera black bee Alain Vignal,Sonia Eynard,Christophe Klopp,Kamila Canale-Tabet,William Marandeet al. 8. Congress of Apidology (EurBee 8), Sep 2018, Ghent, Belgium Communication dans un congrès hal-02785743v1
Exploiting genomic data of autochthonous pig breeds: conservation genetics comes of age Luca Fontanesi,G. Schiavo,S. Bovo,A. Ribani,C. Geraciet al. 69. Annual Meeting of the European Federation of Animal Science (EAAP), Aug 2018, Dubrovnik, Croatia. 705 p Communication dans un congrès hal-02735401v1
Signatures génomiques de l'histoire évolutive des races caprines françaises Claire Oget,Pierre Martin,Bertrand Servin,Isabelle Palhiere 24. Rencontres Recherches Ruminants (3R), Dec 2018, Paris, France Communication dans un congrès hal-02735092v1
Explaining the resistance to Varroa destructor in the French honey bee population with VSH, SMR and colony dynamic data Sonia Eynard,Benjamin Basso,Anne-Laure Guirao,Fanny Mondet,Alain Vignalet al. 8. Congress of Apidology (EurBee 8), Sep 2018, Ghent, Belgium Communication dans un congrès hal-02785764v1
Study of recombination rate in Lacaune sheep informs its evolution in Soay sheep Morgane Petit,Carole Moreno-Romieux,Bertrand Servin XVI Gordon Research Conference : Quantitative Genetics & Genomics, Feb 2017, Huston, United States Communication dans un congrès hal-01605198v1
Insights on the genetic determinism and evolution of recombination rates in Sheep Morgane Petit,Stéphane Fabre,Julien Sarry,Carole Moreno,Bertrand Servin 68. Annual Meeting of the European Association for Animal Production (EAAP), Aug 2017, Tallinn, Estonia. 513 p Communication dans un congrès hal-02736538v1
EIF2S2 Retroposition into IRF2BP2 Underlies Fleece Variation in Sheep through the Formation of a Long Endogenous Double-Stranded RNA Julie Demars,Margarita Cano,Laurence Drouilhet,Stéphane Fabre,Bertrand Servinet al. Plant and Animal Genomes Conference, Jan 2017, San Diego, United States Communication dans un congrès hal-02785197v1
Finse-scale recombination maps in the Sheep Morgane Petit,Carole Moreno-Romieux,Bertrand Servin XXIV PAG - Plant and Animal Genome Conference, Jan 2016, San Diego, United States Communication dans un congrès hal-01603580v1
High density genome scan for selection in French sheep Christina Rochus,Flavie Tortereau,Carole Moreno-Romieux,Gwenola Tosser-Klopp,Bertrand Servin XXIV. Plant and Animal Genome Conference (PAG), Jan 2016, San Diego, United States Communication dans un congrès hal-02792842v1
Fine-scale recombination maps in the Sheep Morgane Petit,Carole Moreno-Romieux,Bertrand Servin XV Gordon meeting, Feb 2015, Pise, Italy Communication dans un congrès hal-01602175v1
Disentangling demography and selection effects of cattle domestication - new insights from the 1000 bull genomes project Simon S. Boitard,Marlies Dolezal,Bertrand Servin,Daniel Fischer,Jared Deckeret al. Annual Meeting of the Society for Molecular Biology and Evolution (SMBE), Jul 2015, Vienne, Austria Communication dans un congrès hal-02796438v1
Genome-wide association study for response to [i]Eimeria maxima[/i] challenge in broilers Edin Hamzic,Bertrand Bed'Hom,Frédéric Herault,Herve Juin,Rachel J Hawkenet al. Plant and Animal Genome, Jan 2015, San Diego, United States Communication dans un congrès hal-01194130v1
Combining Genetics Mapping, Selective Sweeps, Genome Re-Requencing and Allele Specific Expression Reveals Several Serious Causative Genes for QTL Regions Pierre-François Roux,Simon Boitard,Anis Djari,Diane Esquerre,Colette Désertet al. International Plant & Animal Genome XXII (PAG), Jan 2014, San Diego, United States Communication dans un congrès hal-01193794v1
Transcriptome-wide investigation of genomic imprinting in chicken Laure Fresard,Sophie Leroux,Bertrand Servin,David Gourichon,Patrice Dehaiset al. 22. International Plant and Animal Genome (PAG), Jan 2014, San Diego, United States Communication dans un congrès hal-01193927v1
Le séquençage du génome du porc : apport des nouvelles technologies de séquençage à la génomique et la génétique porcine Bertrand Servin,Claire Gaillard,Denis Milan,Jean Pierre Bidanel,Juliette Riquet 46. Journées de la Recherche Porcine, Feb 2014, Paris, France Communication dans un congrès hal-01604152v1
Detecting selection signatures from population differentiation: results from the sheephapmap and the 1000 bull genomes datasets Simon S. Boitard,Bertrand Servin,Maria Inès M. I. Fariello Rico,Magali San Cristobal,Aurelien A. Capitanet al. 12.Plant and Animal Genome (PAG), Jan 2014, San Diego, United States Communication dans un congrès hal-02795900v1
Selection through haplotype differentiation in structured populations Simon S. Boitard,Maria Inès M. I. Fariello Rico,Magali San Cristobal,Bertrand Servin Mathematical and Computational Evolutionary Biology, 2013, Montpellier, France Communication dans un congrès hal-02803582v1
Detecting selection through haplotype differentiation in structured populations Simon S. Boitard,Maria Inès M. I. Fariello Rico,Magali San Cristobal,Hugo Naja,Bertrand Servin Gordon Conference on quantitative genetics and genomics, Jul 2013, Galveston - Texas, United States Communication dans un congrès hal-02809529v1
Detecting selection from differentiation between populations: the FLK and hapFLK approach Simon S. Boitard,Bertrand Servin,Maria Inès M. I. Fariello Rico,Claude C. Chevalet,Magali San Cristobalet al. Software and statistical methods for population genetics, 2013, Aussois, France Communication dans un congrès hal-02804684v1
Using haplotype based differentiation tests for detecting soft and incomplete sweeps Simon S. Boitard,Maria Inès M. I. Fariello Rico,Magali San Cristobal,Bertrand Servin Mind The Gap 5, Nov 2013, Vienne, Austria Communication dans un congrès hal-02804219v1
Cartographie fine de régions QTL à l’aide de la puce PorcineSNP60 pour la qualité de la viande en race Large White Marie-Pierre Sanchez,Thierry Tribout,Nathalie Iannuccelli,Marcel Bouffaud,Bertrand Servinet al. Journées des Sciences du muscle et technologie de la viansde, Nov 2012, Caen, France Communication dans un congrès hal-01190243v1
Fine mapping of production and meat quality QTL in Large White pigs using the PorcineSNP60 Beadchip Marie-Pierre Sanchez,Thierry Tribout,Nathalie N. Iannuccelli,Marcel M. Bouffaud,Bertrand Servinet al. EAAP, Aug 2012, Bratislava, Slovakia Communication dans un congrès hal-02745652v1
A fine genetic analysis of congenital diseases in pig Sarah Rousseau Rousseau,Nathalie N. Iannuccelli,Eric Pailhoux,Bertrand Servin,Juliette Riquet 33. ISAG Conference of the International Society for Animal Genetics, Jul 2012, Cairns, Australia Communication dans un congrès hal-02744795v1
Genetic and phenotypic fine characterizations of French porcine reference populations Magali San Cristobal,Simon Boitard,Maria Inès Fariello Rico,Hélène Gilbert,Laurence Liaubetet al. ISAG, Jul 2012, Cairns, Australia. pp.1 Communication dans un congrès hal-01019125v1
Recherche de causes génétiques des anomalies congénitales majeures chez le porc Juliette Riquet,Marie‐josé Mercat,Nathalie Iannuccelli,Bertrand Servin,Eric Pailhouxet al. 43. Journées Recherche Porcine, Feb 2011, Paris, France. pp.7-12 Communication dans un congrès hal-01190211v1
Diversité et biologie intégrative : des pistes à explorer pour combler le gap entre diversité génétique et diversité phénotypique Magali San Cristobal,Simon S. Boitard,Marcel M. Bouffaud,Cécile Canlet,Leonor L. Chaltielet al. COLLOQUE FRB : Les Ressources Génétiques (RG) face aux nouveaux enjeux environnementaux, économiques et sociétaux, Sep 2011, Montpellier, France Communication dans un congrès hal-01000087v1
Detecting selection in population trees: an extension of the Lewontin and Krakauer test with an application to pig Maxime Bonhomme,Claude C. Chevalet,Bertrand Servin,Simon S. Boitard,Jihad Abdallahet al. 9. World Congress on Genetics Applied to Livestock Production, 2010, Leipzig, Germany Communication dans un congrès hal-02812781v1
SNP selection using sparse PLS Simon S. Boitard,Benoit Sansas,Bertrand Servin,Magali San Cristobal 9. World Congress on Genetics Applied to Livestock Production, Aug 2010, Leipzig, Germany Communication dans un congrès hal-02755189v1
Exploiting non-additive effects in genomic selection: a quadratic quantitative genetics approach Claude C. Chevalet,Bertrand Servin,Magali San Cristobal 9. World Congress on Genetics Applied to Livestock Production, 2010, Leipzig, Germany. pp.Inconnu Communication dans un congrès hal-02818213v1
Modelling RH maps uncertainty and application to the validation of whole genome assemblies. Bertrand Servin,Sebastien Givry,Thomas Faraut 9th World Congress on Genetics Applied to Livestock Production, 2010, Leipzig, pp.Inconnu Communication dans un congrès hal-02813656v1
Utilisation dune puce 60 000 SNP pour cartographier finement des QTL affectant des caractères de production, de résistance aux maladies et de comportement chez les ovins Carole Moreno-Romieux,Bertrand Servin,Thomas Faraut,Christophe Klopp,Rachel Ruppet al. 16. Rencontres autour des Recherches sur les Ruminants, Dec 2009, Paris, France Communication dans un congrès hal-02755058v1
Comparison of genome-wide methods for the detection of selection in subdivided populations Simon S. Boitard,Maxime Bonhomme,Bertrand Servin,Claude C. Chevalet 12. Congress of the European Society of Evolutionnary Biology, European Society of Evolutionnary Biology (ESEB). INT., Aug 2009, Turino, Italy Communication dans un congrès hal-02819487v1
Modéliser l'incertitude des cartes d'hybrides irradiés : application à la validation d'assemblage de génomes complets. Bertrand Servin,Thomas Faraut,Sebastien Givry Journées Scientifiques, Département de Génétique Animale, Apr 2008, Lacanau Communication dans un congrès hal-02754669v1
Présentation du projet ANR 2008 SheepSNPQTL : utilisation de la puce 60 000 SNP pour la cartographie fine de QTL chez les ovins. Carole Moreno-Romieux,Andres Legarra,David Robelin,Christèle Robert-Granié,Rachel Ruppet al. Journées Scientifiques, Département de Génétique Animale, Apr 2008, Lacanau, France Communication dans un congrès hal-02813290v1
Caractérisation de populations à partir de l'analyse de régions chromosomiques potentiellement sélectionnées en comparaison à la diversité neutre : étude conjointe de lignées expérimentales de poules et des quatres sous-populations ovines de race Lacaune Isabelle Palhiere Palhière,Valérie Loywyck,Magali San Cristobal,Denis Laloë,Yves Amigueset al. 7. Colloque National - Les Ressources Génétiques à l'heure des Génomes, Oct 2008, Strasbourg, France Communication dans un congrès hal-02755974v1
Efficient multipoint analysis of assocation studies. Bertrand Servin,P. Scheet,M. Stephens The American Society of Human Genetics 55th Annual Meeting, 9-13 october 2006, Oct 2006, New-Orleans, pp.Inconnu Communication dans un congrès hal-02813898v1
Results of three cycles of marker-assisted backcross in pepper for resistance QTLs to Phytophthora capsici Véronique Lefebvre,A. Thabuis,Bertrand Servin,A.M. Daubèze,Patrick Signoretet al. 12. EUCARPIA Meeting, May 2004, Noordwijk, Netherlands Communication dans un congrès hal-02760351v1
Introgression de gènes ou de QTL L. Moreau,Bertrand Servin,Agnes Bouchez,Frederic F. Hospital Séminaire du Département de Génétique Animale INRA, Sep 2001, Batz-sur-Mer, France Communication dans un congrès hal-02759533v1