Bertrand Néron Research Software Engineer @ Bioinformatics and Biostatistics HUB ()https://research.pasteur.fr/en/team/bioinformatics-and-biostatistics-hub/, Institut Pasteur

Identifiants chercheurs

IdHAL :

bneron

ORCID :

0000-0002-0220-0482

Publications

Autre publication scientifique (1)

Software Heritage & HAL Bertrand Néron 2025 Autre publication scientifique pasteur-05425527v1

Logiciel (3)

MacSyLib Bertrand Néron,Sophie Abby,Eduardo Rocha 2025, ⟨swh:1:dir:ab0579d9d9fea3b32750df4ccd076ddde3bbce6a;origin=https://github.com/gem-pasteur/macsylib;visit=swh:1:snp:12363be7b9e43518ba1945d24152d3b89b915f6d;anchor=swh:1:rel:54d76b45afdc0bbf3178753ce34003442b2a9afc⟩ Logiciel hal-05421770v1
MacSyFinder Bertrand Néron,Sophie Abby,Eduardo Rocha 2024, ⟨swh:1:dir:a33618de0c3738daa75c2b1bc3e302df450a3987;origin=https://github.com/gem-pasteur/macsyfinder;visit=swh:1:snp:c8f689b846b5ddaff789ace1e17a2e6ad56e6d0e;anchor=swh:1:rel:2371db752dab111a56fe281675e7176c4da9983d⟩ Logiciel hal-04668349v3
Integron_Finder Bertrand Néron,Jean Cury,Eduardo Rocha,Amandine Perrin 2024, ⟨swh:1:dir:6cc5d36f34974f2264a2ea9e195edb1981b2f9ba;origin=https://github.com/gem-pasteur/Integron_Finder;visit=swh:1:snp:f5d82d096a64d390358869946048ca7f801b2ded;anchor=swh:1:rev:0388197211bd9b232082a2dd9275623b62c5599a⟩ Logiciel hal-04603009v1

Article dans une revue (12)

A Comprehensive Resource for Exploring Antiphage Defense: DefenseFinder Webservice, Wiki and Databases Florian Tesson,Rémi Planel,A. Egorov,Héloïse Georjon,Hugo Vayssetet al. Peer Community Journal, 2024, ⟨10.24072/pcjournal.470⟩ Article dans une revue hal-04600530v2
Integron cassettes commonly integrate into bacterial genomes via widespread non-classical attG sites Céline Loot,Gael A Millot,Egill Richard,Eloi Littner,Claire Vitet al. Nature Microbiology, 2024, 9 (1), pp.228-240. ⟨10.1038/s41564-023-01548-y⟩ Article dans une revue pasteur-04384854v1
MacSyFinder v2: Improved modelling and search engine to identify molecular systems in genomes Bertrand Néron,Rémi Denise,Charles Coluzzi,Marie Touchon,Eduardo P.C. Rochaet al. Peer Community Journal, 2023, 3, pp.e28. ⟨10.24072/pcjournal.250⟩ Article dans une revue (article de synthèse) pasteur-04060331v2
IntegronFinder 2.0: Identification and Analysis of Integrons across Bacteria, with a Focus on Antibiotic Resistance in Klebsiella Bertrand Néron,Eloi Littner,Matthieu Haudiquet,Amandine Perrin,Jean Curyet al. Microorganisms, 2022, 10 (4), pp.700. ⟨10.3390/microorganisms10040700⟩ Article dans une revue hal-03655020v1
Antisense transcriptional interference mediates condition-specific gene repression in budding yeast Alicia Nevers,Antonia Doyen,Christophe Malabat,Bertrand Néron,Thomas Kergrohenet al. Nucleic Acids Research, 2018, 46 (12), pp.6009-6025. ⟨10.1093/nar/gky342⟩ Article dans une revue hal-02349600v1
CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins David Couvin,Aude Bernheim,Claire Toffano-Nioche,Marie Touchon,Juraj Michaliket al. Nucleic Acids Research, 2018, 46 (W1), pp.W246-W251. ⟨10.1093/nar/gky425⟩ Article dans une revue pasteur-02098389v1
Abundance and co-occurrence of extracellular capsules increase environmental breadth: Implications for the emergence of pathogens Olaya Rendueles,Marc Garcia-Garcerà,Bertrand Néron,Marie Touchon,Eduardo P C Rocha PLoS Pathogens, 2017, 44, pp.289 - 289. ⟨10.1371/journal.ppat.1006525.s020⟩ Article dans une revue pasteur-01578349v1
Identification of protein secretion systems in bacterial genomes Sophie S. Abby,Jean Cury,Julien Guglielmini,Bertrand Néron,Marie Touchonet al. Scientific Reports, 2016, 6, ⟨10.1038/srep23080⟩ Article dans une revue pasteur-01374967v1
Identification and analysis of integrons and cassette arrays in bacterial genomes Jean Cury,Thomas Jové,Marie Touchon,Bertrand Néron,Eduardo Pc Rocha Nucleic Acids Research, 2016, 44 (10), pp.4539 - 4550. ⟨10.1093/nar/gkw319⟩ Article dans une revue pasteur-01374968v1
Key components of the eight classes of type IV secretion systems involved in bacterial conjugation or protein secretion J. Guglielmini,Bertrand Néron,E. P. C. Rocha,Sophie S. Abby,M. P. Garcillan-Barciaet al. Nucleic Acids Research, 2014, 42 (9), pp.5715 - 5727. ⟨10.1093/nar/gku194⟩ Article dans une revue pasteur-01374962v1
MacSyFinder: a program to mine genomes for molecular systems with an application to CRISPR-Cas systems. Sophie S Abby,Bertrand Néron,Hervé Ménager,Marie Touchon,Eduardo P C Rocha PLoS ONE, 2013, 9 (10), pp.e110726. ⟨10.1371/journal.pone.0110726⟩ Article dans une revue pasteur-01080418v1
Mobyle: a new full web bioinformatics framework Bertrand Néron,Hervé Ménager,Corinne Maufrais,Nicolas Joly,Julien Maupetitet al. Bioinformatics, 2009, 25 (22), pp.3005-3011. ⟨10.1093/bioinformatics/btp493⟩ Article dans une revue hal-01287963v1

Chapitre d'ouvrage (2)

Identifying Conjugative Plasmids and Integrative Conjugative Elements with CONJscan Jean Cury,Sophie S. Abby,Olivia Doppelt-Azeroual,Bertrand Néron,Eduardo P C Rocha Fernando de la Cruz. Horizontal Gene Transfer : Methods and Protocols, Springer Science; Business Media, pp.265-283, 2019, 978-1-4939-9876-0. ⟨10.1007/978-1-4939-9877-7_19⟩ Chapitre d'ouvrage pasteur-02867882v1
Bioinformatics applications discovery and composition with the Mobyle suite and MobyleNet Hervé Ménager,Vivek Gopalan,Bertrand Néron,Sandrine Larroudé,Julien Maupetitet al. Resource Discovery, 6799, Springer Berlin Heidelberg, pp.11-22, 2012, Lecture Notes in Computer Science, ⟨10.1007/978-3-642-27392-6_2⟩ Chapitre d'ouvrage istex pasteur-03682347v1

Communication dans un congrès (1)

BioWorkFlow: Web Services toolkit and workflow applications evaluation to deploy a confidence network Marc Wessner,Martin Senger,Franck Samson,Philippe Picouet,François Moreewset al. Jobim (Journées Ouvertes Biologie Informatique Mathématiques), Jun 2008, Lille, France Communication dans un congrès inria-00327528v1