Jean-François BRUGERE

Identifiants chercheurs

IdHAL :

brugere

ORCID :

0000-0002-1559-2331

IdRef :

11268176X

Présentation

Publications

Article dans une revue (25)

Methanomethylophilus alvi gen. nov., sp. nov., a Novel Hydrogenotrophic Methyl-Reducing Methanogenic Archaea of the Order Methanomassiliicoccales Isolated from the Human Gut and Proposal of the Novel Family Methanomethylophilaceae fam. nov. Guillaume Borrel,Khaled Fadhlaoui,Wajdi Ben Hania,Nadia Gaci,Gérard Péhau‐arnaudetet al. Microorganisms, 2023, 11 (11), pp.2794. ⟨10.3390/microorganisms11112794⟩ Article dans une revue hal-04306127v1
A catalogue of 1,167 genomes from the human gut archaeome Cynthia Maria Chibani,Alexander Mahnert,Guillaume Borrel,Alexandre Almeida,Almut Werneret al. Nature Microbiology, 2022, 7 (1), pp.48-61. ⟨10.1038/s41564-021-01020-9⟩ Article dans une revue hal-03521407v1
Archaea, specific genetic traits, and development of improved bacterial live biotherapeutic products: another face of next-generation probiotics Khaled Fadhlaoui,Marie-Edith Arnal,Matthieu Martineau,Paméla Camponova,Bernard Ollivieret al. Applied Microbiology and Biotechnology, 2020, 104 (11), pp.4705-4716. ⟨10.1007/s00253-020-10599-8⟩ Article dans une revue hal-02996543v1
The host-associated archaeome Guillaume Borrel,Jean-François Brugere,Simonetta Gribaldo,Ruth Schmitz,Christine Moissl-Eichinger Nature Reviews Microbiology, 2020, ⟨10.1038/s41579-020-0407-y⟩ Article dans une revue pasteur-02942982v1
Pyrrolysine in archaea: a 22nd amino acid encoded through a genetic code expansion Jean-François Brugere,John F. Atkins,Paul W. O'Toole,Guillaume Borrel Emerging Topics in Life Sciences, 2018, 2 (4), pp.607 - 618. ⟨10.1042/etls20180094⟩ Article dans une revue hal-02996724v1
ASaiM: a Galaxy-based framework to analyze microbiota data Bérénice Batut,Kevin Gravouil,Clemence Defois,Saskia Hiltemann,Jean-François Brugèreet al. GigaScience, 2018, 7 (6), pp.1-7. ⟨10.1093/gigascience/giy057⟩ Article dans une revue hal-01990448v1
Fecal microbiota variation across the lifespan of the healthy laboratory rat Burkhardt Flemer,Nadia Gaci,Guillaume Borrel,Ian R. Sanderson,Prem P. Chaudharyet al. Gut microbes, 2017, 8 (5), pp.428 - 439. ⟨10.1080/19490976.2017.1334033⟩ Article dans une revue hal-01658606v1
Functional amplification and preservation of human gut microbiota Nadia Gaci,Prem Prashant Chaudhary,William Tottey,Monique Alric,Jean-François Brugère Microbial Ecology in Health and Disease, 2017, 28 (1), pp.1308070. ⟨10.1080/16512235.2017.1308070⟩ Article dans une revue hal-01612774v1
Colonic transit time is a driven force of the gut microbiota composition and metabolism: In vitro evidence William Tottey,David Feria Gervasio,Nadia Gaci,Brigitte Laillet,Estelle Pujos-Guillotet al. Journal of Neurogastroenterology and Motility, 2017, 23 (1), pp.124-134. ⟨10.5056/jnm16042⟩ Article dans une revue hal-01595498v1
Genomics and metagenomics of trimethylamine-utilizing Archaea in the human gut microbiome Guillaume Borrel,Angela Mccann,Jennifer Deane,Marta C Neto,Denise B Lynchet al. The International Society of Microbiologial Ecology Journal, 2017, 11 (9), pp.2059 - 2074. ⟨10.1038/ismej.2017.72⟩ Article dans une revue hal-01658467v1
Comparative genomics of microsporidian genomes reveals a minimal non-coding RNA set and new insights for transcription in minimal eukaryotic genomes Abdel Belkorchia,Jean-François Pombert,Valérie Polonais,Nicolas Parisot,Frédéric Delbacet al. DNA Research, 2017, 24 (3), pp.251-260. ⟨10.1093/dnares/dsx002⟩ Article dans une revue hal-01594835v1
PhylOPDb: a 16S rRNA oligonucleotide probe database for prokaryotic identification Faouzi Jaziri,Nicolas Parisot,Anis Abid,Jérémie Denonfoux,C. Ribièreet al. Database - The journal of Biological Databases and Curation, 2014, 2014, pp.bau036. ⟨10.1093/database/bau036⟩ Article dans une revue hal-01612766v1
Three-stage continuous culture system with a self-generated anaerobia to study the regionalized metabolism of the human gut microbiota David Feria Gervasio,William Tottey,Nadia Gaci,Monique Alric,Jean-Michel Cardotet al. Journal of Microbiological Methods, 2014, 96, pp.111-118. ⟨10.1016/j.mimet.2013.11.015⟩ Article dans une revue istex hal-01189891v1
Unique Characteristics of the Pyrrolysine System in the 7th Order of Methanogens: Implications for the Evolution of a Genetic Code Expansion Cassette Guillaume Borrel,Nadia Gaci,Pierre Peyret,Paul W. O'Toole,Simonetta Gribaldoet al. Archaea, 2014, 2014, pp.1 - 11. ⟨10.1155/2014/374146⟩ Article dans une revue hal-01612761v1
Comparative genomics highlights the unique biology of Methanomassiliicoccales, a Thermoplasmatales-related seventh order of methanogenic archaea that encodes pyrrolysine. Guillaume Borrel,Nicolas Parisot,Hugh Harris,Eric Peyretaillade,Nadia Gaciet al. BMC Genomics, 2014, 15 (1), pp.679. ⟨10.1186/1471-2164-15-679⟩ Article dans une revue pasteur-01059404v1
Archaebiotics Proposed therapeutic use of archaea to prevent trimethylaminuria and cardiovascular disease Paul W O’toole,Jean-François Brugère,Guillaume Borrel,Nadia Gaci,William Totteyet al. Gut microbes, 2014, 5 (1), pp.5 - 10. ⟨10.4161/gmic.26749⟩ Article dans une revue hal-01612755v1
The Human Gut Chip ‘‘HuGChip’’, an Explorative Phylogenetic Microarray for Determining Gut Microbiome Diversity at Family Level William Tottey,Jeremie Denonfoux,Faouzi Jaziri,Nicolas Parisot,Mohiedine Missaouiet al. PLoS ONE, 2013, 449, pp.804 - 804. ⟨10.1371/journal.pone.0062544.s004⟩ Article dans une revue hal-01612757v1
Genome Sequence of &quot;Candidatus Methanomassiliicoccus intestinalis&quot; Issoire-Mx1, a Third Thermoplasmatales-Related Methanogenic Archaeon from Human Feces Guillaume Borrel,Hugh Harris,Nicolas Parisot,Nadia Gaci,William Totteyet al. Genome Announcements, 2013, 1 (4), pp.e00453-13. ⟨10.1128/genomeA.00453-13⟩ Article dans une revue pasteur-02445822v1
Phylogenomic Data Support a Seventh Order of Methylotrophic Methanogens and Provide Insights into the Evolution of Methanogenesis Guillaume Borrel,Paul W O 'Toole,Hugh Harris,Pierre Peyret,Jean-François Brugereet al. Genome Biology and Evolution, 2013, 5 (10), pp.1769 - 1780. ⟨10.1093/gbe/evt128⟩ Article dans une revue hal-01612746v1
Genome Sequence of &quot;Candidatus Methanomethylophilus alvus&quot; Mx1201, a Methanogenic Archaeon from the Human Gut Belonging to a Seventh Order of Methanogens Guillaume Borrel,Hugh Mb Harris,William Tottey,A. Mihajlovski,Nicolas Parisotet al. Journal of Bacteriology, 2012, 194 (24), pp.6944 - 6945. ⟨10.1128/JB.01867-12⟩ Article dans une revue hal-01612754v1
Tools for stools: the challenge of assessing human intestinal microbiota using molecular diagnostics Jean-François Brugère,Agnès Mihajlovski,Mohieddine Missaoui,Pierre Peyret Expert Review of Molecular Diagnostics, 2009, 9 (4), pp.353-65. ⟨10.1586/erm.09.16⟩ Article dans une revue hal-00529610v1
A putative new order of methanogenic Archaea inhabiting the human gut, as revealed by molecular analyses of the mcrA gene Jean-François Brugere,Agnès Mihajlovski,Monique Alric,Jean-François Brugère Research in Microbiology, 2008, 159 (7-8), pp.516 - 521. ⟨10.1016/j.resmic.2008.06.007⟩ Article dans une revue istex hal-01612747v1
Characterisation and expression of phospholipases B from the opportunistic fungus Aspergillus fumigatus Da-Kang Shen,Ali Dehghan Noodeh,Abdolhassan Kazemi,Renée Grillot,Geoff Robsonet al. FEMS Microbiology Letters, 2004, 239 (1), pp.87 - 93. ⟨10.1016/j.femsle.2004.08.019⟩ Article dans une revue hal-01612756v1
In-gel DNA radiolabelling and two-dimensional pulsed field gel electrophoresis procedures suitable for fingerprinting and mapping small eukaryotic genomes Jean-François Brugère,Emmanuel Cornillot,Guy Méténier,Christian Vivarès Nucleic Acids Research, 2000, 28 (10), pp.48e - 48. ⟨10.1093/nar/28.10.e48⟩ Article dans une revue hal-01612762v1
Encephalitozoon cuniculi (Microspora) genome: physical map and evidence for telomere-associated rDNA units on all chromosomes Jean-François Brugère,Emmanuel Cornillot,Guy Méténier,Aaron Bensimon,Christian Vivarès Nucleic Acids Research, 2000, 28 (10), pp.2026 - 2033. ⟨10.1093/nar/28.10.2026⟩ Article dans une revue hal-01612753v1

Communication dans un congrès (3)

Archaea microbial candidates in next-generation probiotics development Jean François Brugere,Wajdi Ben Hania,Marie-Edith Arnal,Céline Ribière,Nathalie Balletet al. 9. Meeting on Probiotics, Prebiotics and New Foods, Nutraceuticals and Botanicals for Nutrition and Human and Microbiota, Sep 2017, Rome, Italy. ⟨10.1097/MCG.0000000000001043⟩ Communication dans un congrès hal-02737967v1
ASaiM: An intuitive and adjustable pipeline to process metatranscriptomic data from intestinal microbiota Bérénice Batut,Clémence Defois,Céline Ribière,Cyrielle Gasc,Jean-François Brugèreet al. JOBIM 2015 - Journées Ouvertes Biologie Informatique Mathématiques, Jul 2015, Clermont-Ferrand, France Communication dans un congrès hal-04764365v1
Le concept &quot;Archaebiotics&quot;, vers de nouveaux probiotiques préventifs des maladies cardiovasculaires ? Jean-François Brugère,Guillaume Borrel,Nadia Gaci,William Tottey,Monique Alricet al. 6. Journée scientifique du CNRH Auvergne, Centre de Recherche en Nutrition Humaine (CRNH). Clermont-Ferrand, FRA., Nov 2013, Clermont - Ferrand, France. pp.11-11 Communication dans un congrès hal-01056810v1

Poster de conférence (3)

A Galaxy-based framework to analyze raw sequencing data from microbiota Bérénice Batut,Clémence Defois,Kevin Gravouil,Jean-François Brugère,Éric Peyretailladeet al. Galaxy Community Conference 2017, Jun 2017, Montpellier, France. ⟨10.7490/f1000research.1114448.1⟩ Poster de conférence hal-04763022v1
How to analyze raw sequencing data from microbiota? Using ASaiM! Bérénice Batut,Clémence Defois,Kevin Gravouil,Jean-François Brugère,Éric Peyretailladeet al. German Conference on Bioinformatics (GCB) 2017, Sep 2017, Tubingen, Germany. ⟨10.7490/f1000research.1114882.1⟩ Poster de conférence hal-04762996v1
Analyze your microbiota sequencing data using a Galaxy-based framework References Bérénice Batut,Clémence Defois,Kevin Gravouil,Cyrielle Gasc,Thomas Eymardet al. JOBIM 2016 - Journées Ouvertes Biologie Informatique Mathématiques, Jun 2016, Lyon, France Poster de conférence hal-04763064v1