Camille Clerissi

Présentation

I. Personal informations CLERISSI Camille Date and place of birth: 13/04/1985, Miramas, France. Address: CRIOBE USR3278 EPHE-CNRS-UPVD, Université de Perpignan via Domitia, 58 avenue Paul Alduy, 66860, Perpignan. Email : camille.clerissi@ephe.sorbonne.fr

Professional activity: Assistant professor (Ecole Pratique des Hautes Etudes).

II. Education 2009-2012 PhD “Diversity and distribution of Prasinovirus (Phycodnaviridae): influence of environmental factors and evolutionary mechanisms”, University Pierre et Marie Curie, Oceanological Observatory of Banyuls-sur-Mer, France. 2007-2009 Master’s degree “Oceanography and marine environments”, University Pierre et Marie Curie, Paris, France. 2003-2007 Licence’s degree “Biology of Organisms”, Université Montpellier 2, France.

III. Professional experience Research 2018 Assistant professor (Ecole Pratique des Hautes Etudes), CRIOBE USR3278 EPHE-CNRS-UPVD, University via Domitia Perpignan, France. 2018 Post-doctoral fellowship: “Genomic analyses of the Acanthurus triostegus holobiont in the Pacific Ocean”, with S. Planes, CRIOBE USR3278 EPHE-CNRS-UPVD, University via Domitia Perpignan, France. 2016-2017 Post-doctoral fellowship: “Specificity and stability of microbial communities associated to Crassostrea gigas oysters”, with E. Toulza and J. de Lorgeril, UMR 5244 CNRS-IFREMER-University Montpellier 2, University via Domitia Perpignan, France. 2013-2016 Post-doctoral fellowship: “Genomic analysis of legume symbionts: comparison between experimental and natural evolution”, with E.P.C. Rocha, Institut Pasteur, Paris, and C. Masson-Boivin, UMR 2594/441 CNRS-INRA, Castanet-Tolosan, France. 2009-2012 PhD “Diversity and distribution of Prasinovirus (Phycodnaviridae): influence of environmental factors and evolutionary mechanisms”, with Y. Desdevises and N. Grimsley, UMR 7232 CNRS, University Pierre et Marie Curie, Oceanological Observatory of Banyuls-sur-Mer, France. 2009 Master 2: “Strain specificity of Prasinoviruses and coevolution with their hosts, the Prasinophyceae”, with Y. Desdevises and N. Grimsley, UMR 7232 CNRS, University Pierre et Marie Curie, Oceanological Observatory of Banyuls-sur-Mer, France. 2008 Master 1: “The life cycles of bacteriophages and the physiology of prokaryotes associated with the mucus of corals from the Tulear lagoon (Madagascar)”, with T. Bouvier, UMR 5119 CNRS, University Montpellier 2, France. 2007 Bacterial diversity in the Thau lagoon, voluntary training period with T. Bouvier, UMR 5119 CNRS, University Montpellier 2, France. Teaching 2018 Practical work of biodiversity analyses (4h), Master 2 EPHE. University via Domitia, Perpignan, France. 2018 Lecture of biodiversity analyses (molecular tools) (6h), Master 1 Biology-Ecology-Evolution. University via Domitia, Perpignan, France. 2013 Practical work of microbiology (16h), Licence 2. University Paul Sabatier Toulouse 3, Toulouse, France. 2010 Practical work of biology of the development and reproduction (35h), Licence 2 Biology and Ecology. University via Domitia, Perpignan, France. 2010 Practical work of data analysis (Ordination: PCA and CA; Clustering) (8h), Master 1 Oceanography and marine environments, University Pierre et Marie Curie, Oceanological Observatory of Banyuls-sur-Mer, France.

IV. Supervision 2017 Workshop for PhD students, University via Domitia, Perpignan. “Statistical and multivariate analyses of microbiota”. 2017 Erwan Harscouet, voluntary training period post-Licence’s degree, 3rd year, University of Montpellier. Supervision with E. Toulza and G. Mitta. “Statistical and multivariate analyses of microbial communities”. 2014 François Li, Master’s degree, 2nd year, Master Biotechnology and Biology of Plants, University of Bordeaux. Supervision with D. Capela. “Metabolic changes associated to the experimental evolution of a plant pathogen into a legume symbiont”. 2012 Manon Denjean, Licence’s degree, 2nd year, ESTBB, Lyon. Supervision with Y. Desdevises. “Fingerprinting of algal virus communities”. 2011 Jérémie Garnodier, Licence’s degree, 3rd year, ESTBB, Lyon. Supervision with Y. Desdevises. “Design of a fingerprinting technique for algal virus communities”.

V. Thesis committee 2018 Pierre-Louis Stenger, University of French Polynesia. “Plasticity and chromatic diversity of the pearl oyster Pinctada margaritigera”.

VI. Publications Summary: 16 articles (7 as first author). 1. Karsenti E, Acinas SG, Bork P, Bowler C, de Vargas C, Raes J, Sullivan MB, Arendt D, Benzoni F, Claverie J-M, Follows M, Gorsky G, Hingamp P, Iudicone D, Jaillon O, Kandels-Lewis S, Krzic U, Not F, Ogata H, Pesant S, Reynaud EG, Sardet C, Sieracki ME, Speich S, Velayoudon D, Weissenbach J, Wincker P, and the Tara Oceans Consortium (Abergel C, Arslan D, Audic S, Aury JM, Babic N, Beaufort L, Bittner L, Boss E, Boutte C, Brum J, Carmichael M, Casotti R, Chambouvet A, Chang P, Chica C, Clerissi C, Colin S, Cornejo-Castillo FM, Da Silva C, De Monte S, Decelle J, Desdevises Y, Dimier C, Dolan J, Duhaime M, Durrieu de Madron X, d'Ortenzio F, d'Ovidio F, Ferrera I, Garczarek L, Garet-Delmas MJ, Gasmi S, Gasol JM, Grimsley N, Heilig R, Ignacio-Espinoza J, Jamet JL, Karp-Boss L, Katinka M, Khalili H, Kolber Z, Le Bescot N, Le Goff H, Lima-Mendez G, Mahé F, Mazzocchi MG, Montresor M, Morin P, Noel B, Pedrós-Alió C, Pelletier E, Perez Y, Picheral M, Piganeau G, Poirot O, Poulain J, Poulton N, Prejger F, Prihoda J, Probert I, Rampal J, Reverdin G, Romac S, Romagnan JB, Roullier F, Rouviere C, Samson G, Santini S, Sarmento H, Sciandra A, Solonenko S, Stemmann L, Subirana L, Sunagawa S, Tanaka A, Testor P, Thompson A, Tichanné-Seltzer V, Tirichine L, Toulza E, Tozzi S, Veluchamy A, Zingone A). 2011. A holistic approach to marine eco-systems biology. PLoS Biology, 9 (10):e1001177. doi:10.1371/journal.pbio.1001177. 2. Clerissi C, Desdevises Y, Grimsley N. 2012. Prasinoviruses of the marine green alga Ostreococcus tauri are mainly species-specific. Journal of Virology, 86 (8): 4611. doi:10.1128/JVI.07221-11. 3. Clerissi C, Grimsley N, Desdevises Y. 2013. Genetic exchanges of inteins between prasinoviruses. Evolution, 67 (1): 18-33. doi:10.1111/j.1558-5646.2012.01738.x. 4. Hingamp P, Grimsley N, Acinas SG, Clerissi C, Subirana L, Poulain J, Ferrera I, Sarmento H, Villar E, Lima-Mendez G, Faust K, Sunagawa S, Claverie J-M, Moreau H, Desdevises Y, Bork P, Raes J, de Vargas C, Karsenti E, Kandels-Lewis S, Jaillon O, Not F, Pesant S, Wincker P, Ogata H. 2013. Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes. The ISME Journal, doi:10.1038/ismej.2013.59. 5. Clerissi C, Grimsley N, Ogata H, Hingamp P, Poulain J, Desdevises Y. 2014. Unveiling of the diversity of prasinoviruses (Phycodnaviridae) in marine samples by using high-throughput sequencing analyses of PCR-amplified DNA polymerase and Major Capsid Protein genes. Applied and Environmental Microbiology, 80(10): 3150-3160. doi:10.1128/Aem.00123-14. 6. Bellec L, Clerissi C, Edern R, Foulon E, Simon N, Grimsley N, Desdevises Y. 2014. Cophylogenetic interactions between marine viruses and eukaryotic picophytoplankton. BMC Evolutionary Biology, 14: 59. doi:10.1186/1471-2148-14-59. 7. Clerissi C, Grimsley N, Subirana L, Maria E, Oriol L, Ogata H, Moreau H, Desdevises Y. 2014. Prasinovirus distribution in the Northwest Mediterranean Sea is affected by the environment and particularly by phosphate availability. Virology, doi:10.1016/j.virol.2014.07.016. 8. Remigi P, Capela D, Clerissi C, Tasse L, Torchet R, Bouchez O, Batut J, Cruveiller S, Rocha EPC, Masson-Boivin C. 2014. Transient hypermutagenesis accelerates the evolution of legume endosymbionts following horizontal gene transfer. PLoS Biology, doi:10.1371/journal.pbio.1001942. 9. Clerissi C, Desdevises Y, Romac S, Audic S, de Vargas C, Acinas SG, Casotti R, Poulain J, Wincker P, Hingamp P, Ogata H, Grimsley N. 2015. Deep sequencing of amplified Prasinovirus and host green algal genes from an Indian Ocean transect reveals interacting trophic dependencies and new genotypes. Environmental Microbiology Reports, 7 (6): 979-989. doi:10.1111/1758-2229.12345. 10. Marchetti M, Clerissi C, Yousfi Y, Gris C, Bouchez O, Rocha EPC, Cruveiller S, Jauneau A, Capela D, Masson-Boivin C. 2017. Experimental evolution of rhizobia may lead to either extra- or intracellular symbiotic adaptation depending on the selection regime. Molecular Ecology, doi:10.1111/mec.13895. 11. Capela D, Marchetti M, Clerissi C, Perrier A, Guetta D, Gris C, Valls M, Jauneau A, Cruveiller S, Rocha EPC, Masson-Boivin C. 2017. Recruitment of a lineage-specific virulence regulatory pathway promotes intracellular infection by a plant pathogen experimentally evolved into a legume symbiont. Molecular Biology and Evolution, 34 (10): 2503-2521. doi:10.1093/molbev/msx165. 12. Brener-Raffalli K, Clerissi C, Vidal-Dupiol J, Adjeroud M, Bonhomme F, Pratlong M, Aurelle D, Mitta G, Toulza E. 2018. Thermal regime and host clade, rather than geography, drive Symbiodinium and bacterial assemblages in the scleractinian coral Pocillopora damicornis sensu lato. Microbiome, 6: 39. doi:10.1186/s40168-018-0423-6. 13. Mouahid G, Clerissi C, Allienne J-F, Chaparro C, Yafae SA, Nguéma RM, Ibikounlé M, Moné H. 2018. The phylogeny of the genus Indoplanorbis (Gastropoda, Planorbidae) from Africa and the French West Indies. Zoologica Scripta, doi:10.1111/zsc.12297. 14. Clerissi C, Touchon M, Capela D, Tang M, Cruveiller S, Genthon C, Lopez-Roques C, Parker MA, Moulin L, Masson-Boivin C, Rocha EPC. 2018. Parallels between experimental and natural evolution of legume symbionts. Nature Communications, doi:10.1038/s41467-018-04778-5. 15. Clerissi C, Brunet S, Vidal-Dupiol J, Adjeroud M, Lepage P, Guillou L, Escoubas J-M, Toulza E. 2018. Protists within corals: the hidden diversity. 2018. Frontiers in Microbiology, doi:10.1038/s41467-018-04778-5. 16. De Lorgeril J, Lucasson A, Petton B, Toulza E, Montagnani C, Clerissi C, Vidal-Dupiol J, Chaparro C, Galinier R, Escoubas J-M, Haffner P, Degremont L, Charrière GM, Lafont M, Delort A, Vergnes A, Chiarello M, Faury, Rubio TP, Leroy M, Pérignon A, Régler D, Morga B, Alumno-Bruscia M, Boudry P, Le Roux F, Destoumieux-Garzόn D, Gueguen Y, Mitta G. 2018. Immune-suppression by OsHV-1 viral infection causes fatal bacteremia in Pacific oysters. Nature Communications, doi:10.1038/s41467-018-06659-3.

VII. Communications Oral presentations: 1. Clerissi C, Grimsley N, Desdevises Y. Specificity, evolution, diversity and distribution of prasinoviruses. Oral presentation at the Workshop for the Center of Sea Sciences and PhD students of the University Pierre et Marie Curie, Les Cordeliers, Paris, France, 12-15 sept. 2011 (Chairman of the Physiology and Adaptation session). 2. Clerissi C, Grimsley N, Desdevises Y. Specificity and genetic exchanges of inteins between Prasinoviruses. Oral presentation at the Aquatic Virus Workshop 6 (AVW6), Texel, The Netherlands, 30 oct.-3 nov. 2011. 3. Clerissi C, Grimsley N, Desdevises Y. Diversity and distribution of prasinoviruses. Oral presentation at the Association Francophone d’Ecologie Microbienne (AFEM), Hammamet, Tunisia, 14-16 nov. 2011. 4. Clerissi C, Torchet R, Cruveiller S, Capela D, Gris C, Rocha EPC, Masson-Boivin C. Genomics of adaptation during experimental evolution of a plant pathogen into a legume symbiont. Oral presentation at the 11th Plant-bacteria Meeting, Aussois, France, 3-7 feb. 2014. 5. Clerissi C, Capela D, Marchetti M, Torchet R, Cruveiller S Gris C, Rocha EPC, Masson-Boivin C. Omics of endosymbiosis adaptation during experimental evolution of legume symbionts. Oral presentation at the Congress of the European Society for Evolutionary Biology (ESEB), Lausanne, Switzerland, 10-14 august 2015. 6. Clerissi C, de Lorgeril J, Petton B, Lucasson A, Escoubas J-M, Gueguen Y, Mitta G, Toulza E. Deciphering links between oyster fitness and microbial composition. Oral presentation at the Interdisciplinary Workshop on Holobionts, Bordeaux, France, 6-8 nov. 2017. Posters: 7. Clerissi C, Grimsley N, Desdevises Y. Caractérisation de la spécificité des virus d’Ostreococcus tauri. Poster presented at the Association Francophone d’Ecologie Microbienne (AFEM), “Les interactions microbiennes passées et présentes”, Marseille, France, 4-5 may 2010. 8. Clerissi C, Grimsley N, Desdevises Y. Strain specificity of Ostreococcus tauri viruses. Poster presented at the Viruses of microbes, Institut Pasteur, Paris, France, 21-25 june 2010. 9. Clerissi C, Grimsley N, Desdevises Y. Genetic exchanges of inteins between Prasinoviruses. Poster presented at the Alphy Meeting (Alignment and Phylogeny), Oceanological Observatory of Banyuls-sur-Mer, France, 19-21 march 2012. 10. Clerissi C, Subirana L, Moreau H, Ogata H, Grimsley N, Desdevises Y. Diversity and distribution of prasinoviruses at a large geographical scale. Poster presented at the Viruses of Microbes, Brussels, Belgium, 16-20 july 2012. 11. Clerissi C, Torchet R, Cruveiller S, Capela D, Gris C, Rocha EPC, Masson-Boivin C. Genomics of adaptation during experimental evolution of legume symbionts. Poster presented at the Journées Ouvertes en Biologie, Informatique et Mathématiques (JOBIM), Toulouse, France, 1-4 july 2013. 12. Clerissi C, Torchet R, Cruveiller S, Capela D, Gris C, Rocha EPC, Masson-Boivin C. Genomics of adaptation during experimental evolution of legume symbionts. Poster presented at the Congress of the European Society for Evolutionary Biology (ESEB), Lisbon, Portugal, 19-24 august 2013. 13. Clerissi C, Torchet R, Cruveiller S, Capela D, Gris C, Rocha EPC, Masson-Boivin C. Genomics of adaptation during experimental evolution of legume symbionts. Poster presented at the 3rd Meeting on Molecular Mechanisms in Nitrogen fixing Root Endosymbioses. Montpellier, France, 26-27 sept. 2013. 14. Clerissi C, Petton B, Escoubas J-M, Gueguen Y, Mitta G, De Lorgeril J, Toulza E. Specificity and stability of microbial communities associated to healthy and diseased Crassostrea gigas oysters. Poster presented at the International Conference on Holobionts, Paris, France, 19-21 april 2017. Others congress, seminars or workshops: 15. Participation to Phylogeny of communauties (PhyloCom), Montpellier, France, 3 may 2010. 16. Participation to Journée biodiversité et bioinformatique, Maison des sciences de l’Homme, Grenoble, France, 29 june 2011. 17. Participation to the 5ème microbiotoul. Toulouse, France, 21-22 oct. 2013. 18. Participation to Journées annuelles de la société française de systématique, Méthodes phylogénétiques comparatives: comment parler du process à partir du pattern? Banyuls-sur-Mer, France, 25-27 oct. 2017. 19. Participation to Integrated immunity in holobionts. Montpellier, France, 15-16 oct. 2018.

VIII. Competences Summary: high-throughput sequencing (metabarcoding, metagenomic, genomic, transcriptomic), Bioinformatic (bash, python), Biostatistics, Multivariate analyses, Phylogeny, Microbiology (bacteria, protists, viruses). Data analyses Analysis of sequences from high-throughput technologies: functional and population genomics (core-genome, pan-genome, polymorphism, BLAST, HMM profiles, COG categories and metabolism (KEGG and Metacyc)), transcriptomic analyses (differential expressions, links with quantitative traits), analysis of communities using metabarcoding (ampliconnoise for sequence cleaning; mothur, Qiime, FROGS to define operational taxonomic units (OTU) and their taxonomic annotations; Tax4Fun for functional annotations). Analysis of sequences and molecular evolution: alignment and polymorphism analyses (mafft, muscle, Seaview, EMBOSS), recombination analyses (PHI, ClonalFrameML), signature of selection (codeml), lateral gene transfers (SH), in silico evolution of genomes, phylogenetic reconstructions using bayesian inference (MrBayes) and maximum likelihood (PhyML, IQ-TREE), cophylogenetic analyses (ParaFit, TreeMap, Jane), evolutionary analysis of gene content (losses, gains, gene duplications) (COUNT). Biostatistics: parametric and non-parametric tests, permutational approaches, linear models, multidimensional analyses (Mantel test, principal component analysis, correspondance analysis, canonical correspondance analysis, redundancy analysis, linear discriminant analysis, partial least square regression, MANOVA). Analyses on R, xlstat and JMP. Languages: Unix, R, notions of python programming. Experiments Molecular biology: DNA and RNA extraction (oysters, filters), polymerase chain reaction (PCR), design of specific and blocking primers for Sanger and high-throughput sequencing (454-Titanium, Illumina). Sampling: On board the Tara schooner (Tara-Oceans and Tara-Pacific projects), filtration, isolation using culture-dependent methods for microorganisms (bacteria, protist, virus), purification of environmental virus, physico-chemical measurements, fish dissection. in vitro culture: culture of microorganisms (bacteria, protists, viruses), microbial physiology (respiration, membrane integrity), phenotype microarrays of microbes (Omnilog, Biolog). Imagery: flux cytometry, epifluorescence microscopy, fluorescence in situ hybridization (FISH). Languages French (native language), english and spanish (fluent). Scuba diving Level 2, CMAS.

IX. Scientific formations 2018-2019 Teaching practices (12h). Internal school PSL University, France. 2018 High performance computing for genomics (TGCC/CCRT) (13h). Persons in charge: A. Kourlaiev and N. Wiart. Place: TGCC, CEA, Bruyères-le-Châtel, France. 2014 Transcriptomic analyses and detection of horizontal gene transfers (8h). Persons in charge: S. Carrere, L. Legrand, and E. Sallet. Place: INRA, Castanet-Tolosan, France. 2014 Programming in Python (21h). Person in charge: J. Delamarche. Place: INRA, Castanet-Tolosan, France. 2013 Genomic and transcriptomic (8h). Persons in charge: S. Carrere, L. Legrand, and L. Cottret. Place: INRA, Castanet-Tolosan, France. 2013 Practice of bioinformatic: introducing PYTHON (8h). Persons in charge: F. Samson and S. Dèrozier. Place: INRA, Jouy-en-Josas, France. 2011 Unix and course to use the computer cluster of the University Pierre et Marie Curie (12h). Person in charge: M. Krawczyk. Place: Oceanological Observatory of Banyuls-sur-Mer, France. 2011 Marine Ecological and Evolutionary Genomics (84h). Marine genomics 4 Users. Person in charge: J. Collen, Biological Station of Roscoff, France. 2011 Bioinformatic: “Next Generation Sequencing” (17h), Bioinformatic platform “Genotoul”, Unity BIA, INRA Toulouse. Persons in charge: J. Mariette and C. Noirot. Place: Oceanological Observatory of Banyuls-sur-Mer, France. 2009 Genomic analysis (30h). Person in charge: F. Sabot. Place: University via Domitia, Perpignan, France.

X. Fellowships 2017 Fellowship from the “Holobiont challenge” of UMR 5244 (CNRS-IFREMER-University Montpellier 2-University via Domitia Perpignan) for the project “Protists within microbiota” (5500 €), University via Domitia, Perpignan, France. 2009-2012 Doctoral fellowship from the AXA Research Fund (120000 €).

XI. Collaborations 2017-2018 Microbiota of the coral Pocillopora damicornis: L. Guillou (Biological station of Roscoff), M. Adjeroud (IRD Perpignan), J. Vidal-Dupiol, J.-M. Escoubas (University of Montpellier), P. Lepage, S. Brunet (Génome Québec, Montréal). 2017-2018 Phylogeny of Indoplanorbis: G. Mouahid, H. Mone (University via Domitia Perpignan). 2016-2017 Genomic of Roseobacter: R. Lami (Oceanological Observatory of Banyuls-sur-Mer), L. Urios (University of Pau). 2013-2016 Experimental evolution of legume symbionts: S. Cruveiller, R. Torchet, C. Médigue (CEA Génoscope, Evry), D. Capela, M. Marchetti (INRA, Castanet-Tolosan). 2009-2012 Tara-Oceans: H. Ogata (Institute of Chemical Research, Kyoto, Japon), P. Hingamp (University of Aix-Marseille), S. Acinas (Institut de Ciències del Mar, Barcelone, Espagne), R. Casotti (Stazione Zoologica, Naples, Italie), C. de Vargas, S. Audic, S. Romac (Biological station of Roscoff), J. Poulain, P. Wincker (CEA Génoscope, Evry).

Publications

Article dans une revue (27)

Invasive macroalgae shape chemical and microbial waterscapes on coral reefs Chloé Pozas-Schacre,Hugo Bischoff,Delphine Raviglione,Slimane Chaib,Camille Clerissiet al. Communications Biology, 2025, 8 (1), pp.16. ⟨10.1038/s42003-024-07433-6⟩ Article dans une revue hal-04888296v1
Contact‐ and Water‐Mediated Interactions With an Allelopathic Macroalga Drive Distinct Coral Microbiome and Metabolome Chloé Pozas-Schacre,Hugo Bischoff,Camille Vizon,Delphine Raviglione,Camille Clerissiet al. Environmental Microbiology, 2025, 27 (8), ⟨10.1111/1462-2920.70160⟩ Article dans une revue hal-05340296v1
Microbiota of host sea anemones and their associated anemonefish show contrasting responses to a bleaching event Camille Clerissi,Ricardo Beldade,Anouar Mejait,Anne Haguenauer,Edouard Jobetet al. Coral Reefs, 2025, ⟨10.1007/s00338-025-02799-3⟩ Article dans une revue hal-05466883v1
Validation of the Chemical and Biological Steps Required Implementing an Advanced Multi-Omics Approach for Assessing the Fate and Impact of Contaminants in Lagoon Sediments Anouar Mejait,Aurélie Fildier,Barbara Giroud,Gaëlle Daniele,Laure Wiestet al. Metabolites, 2024, 14 (8), pp.454. ⟨10.3390/metabo14080454⟩ Article dans une revue hal-04683621v1
Negative parental and offspring environmental effects of macroalgae on coral recruitment are linked with alterations in the coral larval microbiome Chloé Pozas-Schacre,Hugo Bischoff,Camille Clerissi,Maggy Nugues Royal Society Open Science, 2024, 11 (7), ⟨10.1098/rsos.240187⟩ Article dans une revue hal-04704628v1
Metabarcoding and Metabolomics Reveal the Effect of the Invasive Alien Tree Miconia calvescens DC. on Soil Diversity on the Tropical Island of Mo’orea (French Polynesia) Camille Clerissi,Slimane Chaïb,Delphine Raviglione,Benoit Espiau,Cédric Bertrandet al. Microorganisms, 2023, 11 (4), pp.832. ⟨10.3390/microorganisms11040832⟩ Article dans une revue hal-04196287v1
A core of functional complementary bacteria infects oysters in Pacific Oyster Mortality Syndrome Camille Clerissi,Xing Luo,Aude Lucasson,Shogofa Mortaza,Julien de Lorgerilet al. Animal Microbiome, 2023, 5, ⟨10.1186/s42523-023-00246-8⟩ Article dans une revue hal-04107637v1
Antibacterial Activities and Life Cycle Stages of Asparagopsis armata: Implications of the Metabolome and Microbiome Christelle Parchemin,Delphine Raviglione,Anouar Mejait,Pierre Sasal,Elisabeth Faliexet al. Marine drugs, 2023, 21 (6), pp.363. ⟨10.3390/md21060363⟩ Article dans une revue hal-04198788v1
Covariation between microeukaryotes and bacteria associated with Planorbidae snails Camille Clerissi,Camille Huot,Anaïs Portet,Benjamin Gourbal,Eve Toulza PeerJ, 2023, 11, pp.e16639. ⟨10.7717/peerj.16639⟩ Article dans une revue hal-04373549v1
Shark Provisioning Influences the Gut Microbiota of the Black-Tip Reef Shark in French Polynesia Anaïs Esposito,Pierre Sasal,Éric Clua,Emese Meglécz,Camille Clerissi Fishes, 2022, 7 (6), pp.312. ⟨10.3390/fishes7060312⟩ Article dans une revue hal-03835359v1
Unveiling protist diversity associated with the Pacific oyster Crassostrea gigas using blocking and excluding primers Camille Clerissi,Laure Guillou,Jean-Michel Escoubas,Eve R Toulza BMC Microbiology, 2020, 20, pp.193. ⟨10.1186/s12866-020-01860-1⟩ Article dans une revue hal-02914979v1
Microbiota Composition and Evenness Predict Survival Rate of Oysters Confronted to Pacific Oyster Mortality Syndrome Camille Clerissi,Julien de Lorgeril,Bruno Petton,Aude Lucasson,Jean-Michel Escoubaset al. Frontiers in Microbiology, 2020, 11, pp.311. ⟨10.3389/fmicb.2020.00311⟩ Article dans une revue hal-02551728v1
Description of Palleronia rufa sp. nov., a biofilm-forming and AHL-producing Rhodobacteraceae, reclassification of Hwanghaeicola aestuarii as Palleronia aestuarii comb. nov., Maribius pontilimi as Palleronia pontilimi comb. nov., Maribius salinus as Palleronia salina comb. nov., Maribius pelagius as Palleronia pelagia comb. nov. and emended description of the genus Palleronia Claudie Barnier,Camille Clerissi,Raphaël Lami,Laurent Intertaglia,Philippe Lebaronet al. Systematic and Applied Microbiology, 2020, 43 (1), pp.126018. ⟨10.1016/j.syapm.2019.126018⟩ Article dans une revue hal-02390411v1
Schistosomiasis vector snails and their microbiota display a phylosymbiosis pattern Camille Huot,Camille Clerissi,Benjamin Gourbal,Richard Galinier,David Duvalet al. Frontiers in Microbiology, In press, ⟨10.3389/fmicb.2019.03092⟩ Article dans une revue hal-02440210v1
Immune-suppression by OsHV-1 viral infection causes fatal bacteraemia in Pacific oysters Julien de Lorgeril,Aude Lucasson,Bruno Petton,Eve Toulza,Caroline Montagnaniet al. Nature Communications, 2018, 9 (1), pp.4215. ⟨10.1038/s41467-018-06659-3⟩ Article dans une revue hal-01898110v1
The phylogeny of the genus Indoplanorbis (Gastropoda, Planorbidae) from Africa and the French West Indies Gabriel Mouahid,Camille Clerissi,Jean-François Allienne,Cristian Chaparro,Salem Al Yafaeet al. Zoologica Scripta, 2018, 47 (5), pp.558-564. ⟨10.1111/zsc.12297⟩ Article dans une revue hal-01838840v1
Thermal regime and host clade, rather than geography, drive Symbiodinium and bacterial assemblages in the scleractinian coral Pocillopora damicornis sensu lato Kelly Brener-Raffalli,Camille Clerissi,Jeremie Vidal-Dupiol,Mehdi Adjeroud,François Bonhommeet al. Microbiome, 2018, 6, pp.39. ⟨10.1186/s40168-018-0423-6⟩ Article dans une revue hal-01729372v1
Protists Within Corals: The Hidden Diversity Camille Clerissi,Sébastien Brunet,Jeremie Vidal-Dupiol,Mehdi Adjeroud,Pierre Lepageet al. Frontiers in Microbiology, 2018, 9, pp.2043. ⟨10.3389/fmicb.2018.02043⟩ Article dans une revue hal-01887637v1
Author Correction : Parallels between experimental and natural evolution of legume symbionts (vol 9, 2264, 2018) Camille Clerissi,Marie Touchon,Delphine Capela,Mingxing Tang,Stéphane Cruveilleret al. Nature Communications, 2018, 9, ⟨10.1038/s41467-018-07205-x⟩ Article dans une revue hal-02617830v1
Parallels between experimental and natural evolution of legume symbionts Camille Clerissi,Marie Touchon,Delphine Capela,Mingxing Tang,Stéphane Cruveilleret al. Nature Communications, 2018, 9 (1), pp.2264. ⟨10.1038/s41467-018-04778-5⟩ Article dans une revue cea-01880286v1
Experimental evolution of rhizobia may lead to either extra- or intracellular symbiotic adaptation depending on the selection regime Marta Marchetti,Camille Clerissi,Yasmine Yousfi,Carine Gris,Olivier Bouchezet al. Molecular Ecology, 2017, 26 (7), pp.1818-1831. ⟨10.1111/mec.13895⟩ Article dans une revue hal-01607703v1
Recruitment of a Lineage-Specific Virulence Regulatory Pathway Promotes Intracellular Infection by a Plant Pathogen Experimentally Evolved into a Legume Symbiont Delphine Capela,Marta Marchetti,Camille Clerissi,Anthony Perrier,Dorian Guettaet al. Molecular Biology and Evolution, 2017, 34 (10), pp.2503-2521. ⟨10.1093/molbev/msx165⟩ Article dans une revue hal-02620519v1
Deep sequencing of amplified Prasinovirus and host green algal genes from an Indian Ocean transect reveals interacting trophic dependencies and new genotypes Camille Clerissi,Yves Desdevises,Sarah Romac,Stéphane Audic,Colomban de Vargaset al. Environmental Microbiology Reports, 2015, 7 (6), pp.979-989. ⟨10.1111/1758-2229.12345⟩ Article dans une revue hal-01246259v1
Unveiling of the Diversity of Prasinoviruses (Phycodnaviridae) in Marine Samples by Using High-Throughput Sequencing Analyses of PCR-Amplified DNA Polymerase and Major Capsid Protein Genes Camille Clerissi,Nigel Grimsley,Hiroyuki Ogata,Pascal Hingamp,Julie Poulainet al. Applied and Environmental Microbiology, 2014, 80 (10), pp.3150-3160. ⟨10.1128/aem.00123-14⟩ Article dans une revue cea-04648333v1
Cophylogenetic interactions between marine viruses and eukaryotic picophytoplankton Laure Bellec,Camille Clerissi,Roseline Edern,Elodie Foulon,Nathalie Simonet al. BMC Evolutionary Biology, 2014, 14 (1), pp.59. ⟨10.1186/1471-2148-14-59⟩ Article dans une revue hal-01100644v1
Transient Hypermutagenesis Accelerates the Evolution of Legume Endosymbionts following Horizontal Gene Transfer Philippe Remigi,Delphine Capela,Camille Clerissi,Léna Tasse,Rachel Torchetet al. PLoS Biology, 2014, 12 (9), ⟨10.1371/journal.pbio.1001942⟩ Article dans une revue pasteur-01374959v1
Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes Pascal Hingamp,Nigel Grimsley,Silvia G Acinas,Camille Clerissi,Lucie Subiranaet al. The International Society of Microbiologial Ecology Journal, 2013, 7 (9), pp.1678-1695. ⟨10.1038/ismej.2013.59⟩ Article dans une revue hal-01258223v1

Communication dans un congrès (4)

Cracking the code of pacific oyster mortality syndrome Julien de Lorgeril,Aude Lucasson,Bruno Petton,Eve Toulza,C. Montagnaniet al. REID + Immuninv 2019, Réseau Ecologie des Interactions Durables; Réseau Immunité des Invertébrés, May 2019, Montpellier, France Communication dans un congrès hal-04890593v1
Cracking the code of Pacific oyster mortality syndrom Guillaume Mitta,Julien de Lorgeril,Aude Lucasson,Bruno Petton,Eve Toulzaet al. Aqua 2018 14th International Symposium on Aquaculture Nutrition, Aug 2018, Montpellier, France Communication dans un congrès hal-03965691v1
An integrative approach to decipher the summer mortality syndrome affecting Pacific oysters Julien de Lorgeril,Aude Lucasson,Bruno Petton,Eve Toulza,Philippe Haffneret al. Immuninv 2017, Jun 2017, Lyon, France Communication dans un congrès hal-03966171v1
An integrative approach to decipher the mortality syndrome affecting juvenile Pacific oysters Julien de Lorgeril,Aude Lucasson,Bruno Petton,Eve R Toulza,Philippe Haffneret al. International Conference on Holobionts, Apr 2017, Paris, France Communication dans un congrès hal-03965715v1

Poster de conférence (2)

Epigenetic biomarkers of thermotolerance: a pathway for coral conservation Pauline Buso,V Bonito Oliva,Riccardo Rodolfo-Metalpa,Julien de Lorgeril,Guillaume Mittaet al. EPIMAR 2025, May 2025, Barcelone, Spain. Poster de conférence hal-05122979v1
Validation of chemical and biological methods required for the application of an advanced multi-omics approach to lagoon sediment microbiome profiling A. Mejait,A. Fildier,B. Giroud,G. Daniele,L. Wiestet al. RFMF, Jun 2024, Saint-Malo, France Poster de conférence hal-04768686v1

Pré-publication, Document de travail (1)

A core of functionally complementary bacteria colonizes oysters in Pacific Oyster Mortality Syndrome Aude Lucasson,Xing Luo,Shogofa Mortaza,Julien de Lorgeril,Eve Toulzaet al. 2020 Pré-publication, Document de travail hal-03054359v1