Caroline Baroukh

Identifiants chercheurs

IdHAL :

caroline-baroukh

ORCID :

0000-0002-1041-1730

IdRef :

193899892

Publications

Article dans une revue (24)

Disruption of putrescine export in experimentally evolved &lt;i&gt;Ralstonia pseudosolanacearum&lt;/i&gt; enhances symbiosis with &lt;i&gt;Mimosa pudica&lt;/i&gt; Anne-Claire Cazalé,Marvin Navarro,Ginaini Grazielli Doin de Moura,Sophie Valière,Floriant Bellvertet al. mBio, 2026, 17 (1), pp.e01225-25. ⟨10.1128/mbio.01225-25⟩ Article dans une revue hal-05344083v2
Putrescine, a double-edged molecule in plant-bacteria interactions Stephane Genin,Caroline Baroukh Molecular Plant, 2026, ⟨10.1016/j.molp.2026.02.010⟩ Article dans une revue hal-05549247v1
Unraveling the in planta population dynamics of the plant pathogen Ralstonia pseudosolanacearum by mathematical modeling Caroline Baroukh,Léo Gerlin,Antoine Escourrou,Stéphane Genin New Phytologist, 2025, 246, pp.251-261. ⟨10.1111/nph.20216⟩ Article dans une revue hal-04782291v1
Letter to the Editor: The Ralstonia research community rejects the proposal to classify phylotype I Ralstonia into the new species Ralstonia nicotianae Tiffany Lowe-Power,Parul Sharma,Poliane Alfenas-Zerbini,Belén Álvarez,Mohammad Arifet al. PhytoFrontiers, 2023, ⟨10.1094/PHYTOFR-06-23-0071-LE⟩ Article dans une revue hal-04188467v1
Insights into the metabolic specificities of pathogenic strains from the Ralstonia solanacearum species complex Caroline Baroukh,Ludovic Cottret,Emma Pires,Rémi Peyraud,Alice Guidotet al. mSystems, 2023, 18 p. ⟨10.1128/msystems.00083-23⟩ Article dans une revue hal-04172034v1
A universal dynamical metabolic model representing mixotrophic growth of Chlorella sp. on wastes Bruno Assis Pessi,Caroline Baroukh,Anais Bacquet,Olivier Bernard Water Research, 2023, 229, pp.119388. ⟨10.1016/j.watres.2022.119388⟩ Article dans une revue hal-03920752v1
The paradoxes hidden behind the Droop model highlighted by a metabolic approach Caroline Baroukh,Francis Mairet,Olivier Bernard Frontiers in Plant Science, 2022, 13, 16 p. ⟨10.3389/fpls.2022.941230⟩ Article dans une revue hal-03781716v1
A multi-organ metabolic model of tomato predicts plant responses to nutritional and genetic perturbations Léo Gerlin,Ludovic Cottret,Antoine Escourrou,Stéphane Genin,Caroline Baroukh Plant Physiology, 2022, 188 (3), pp.1709-1723. ⟨10.1093/plphys/kiab548⟩ Article dans une revue hal-03727243v1
Trophic preferences of the pathogen Ralstonia solanacearum and consequences on its growth in xylem sap Caroline Baroukh,Meriem Zemouri,Stéphane Genin MicrobiologyOpen, 2022, 11 (1), 14 p. ⟨10.1002/mbo3.1240⟩ Article dans une revue hal-03745744v1
The Fucoxanthin Chlorophyll a/c-Binding Protein in Tisochrysis lutea: Influence of Nitrogen and Light on Fucoxanthin and Chlorophyll a/c-Binding Protein Gene Expression and Fucoxanthin Synthesis Anne Pajot,Johann Lavaud,Gregory Carrier,Matthieu Garnier,Bruno Saint-Jeanet al. Frontiers in Plant Science, 2022, 13, pp.830069. ⟨10.3389/fpls.2022.830069⟩ Article dans une revue hal-03587582v1
MERRIN: MEtabolic Regulation Rule INference from time series data Kerian Thuillier,Caroline Baroukh,Alexander Bockmayr,Ludovic Cottret,Loïc Paulevéet al. Bioinformatics, 2022, 38 (Supplement_2), pp.ii127-ii133. ⟨10.1093/bioinformatics/btac479⟩ Article dans une revue hal-03701755v2
Polyamines: double agents in disease and plant immunity Léo Gerlin,Caroline Baroukh,Stéphane Genin Trends in Plant Science, 2021, 26 (10), pp.1061-1071. ⟨10.1016/j.tplants.2021.05.007⟩ Article dans une revue hal-03259585v1
Unravelling physiological signatures of tomato bacterial wilt and xylem metabolites exploited by Ralstonia solanacearum Léo Gerlin,Antoine Escourrou,Cédric Cassan,Felicià Maviane Macia,Nemo Peeterset al. Environmental Microbiology, 2021, 23 (10), pp.5962-5978. ⟨10.1111/1462-2920.15535⟩ Article dans une revue hal-03211148v1
Genome-Scale Investigation of the Metabolic Determinants Generating Bacterial Fastidious Growth Léo Gerlin,Ludovic Cottret,Sophie Cesbron,Geraldine G. Taghouti,Marie-Agnès Jacqueset al. mSystems, 2020, 5 (2), 15 p. ⟨10.1128/mSystems.00698-19⟩ Article dans une revue hal-02901652v1
Draft genomes and phenotypic characterization of Tisochrysis lutea strains. Toward the production of domesticated strains with high added value Gregory Carrier,Caroline Baroukh,Catherine Rouxel,Laetitia Duboscq-Bidot,Nathalie Schreiberet al. Algal Research - Biomass, Biofuels and Bioproducts, 2018, 29 (Supplement C), pp.1-11. ⟨10.1016/j.algal.2017.10.017⟩ Article dans une revue hal-02627937v1
Combining graph and flux-based structures to decipher phenotypic essential metabolites within metabolic networks Julie Laniau,Clémence Frioux,Jacques Nicolas,Caroline Baroukh,Maria-Paz Cortéset al. PeerJ, 2017, 5, pp.e3860. ⟨10.7717/peerj.3860⟩ Article dans une revue hal-01635688v1
Dynamic metabolic modeling of heterotrophic and mixotrophic microalgal growth on fermentative wastes Caroline Baroukh,Violette Turon,Olivier Bernard PLoS Computational Biology, 2017, 13 (6), pp.e1005590. ⟨10.1371/journal.pcbi.1005590⟩ Article dans une revue hal-01576858v1
Reply to the Comment on “Mathematical modeling of unicellular microalgae and cyanobacteria metabolism for biofuel production” by Baroukh et al. [Curr. Opin. Biotechnol. 2015, 33:198–205] Caroline Baroukh,Rafael Munoz Tamayo,Olivier A. Bernard,Jean-Philippe Steyer Current Opinion in Biotechnology, 2016, 38, pp.200 - 202. ⟨10.1016/j.copbio.2016.02.018⟩ Article dans une revue istex hal-01410975v1
Mathematical modeling of unicellular microalgae and cyanobacteria metabolism for biofuel production Caroline Baroukh,Rafael Munoz Tamayo,Olivier Bernard,Jean-Philippe Steyer Current Opinion in Biotechnology, 2015, 33, pp.198-205. ⟨10.1016/j.copbio.2015.03.002⟩ Article dans une revue (article de synthèse) istex hal-01163456v1
A state of the art of metabolic networks of unicellular microalgae and cyanobacteria for biofuel production Caroline Baroukh,Rafael Munoz Tamayo,Jean-Philippe Steyer,Olivier Bernard Metabolic Engineering, 2015, 30, pp.49-60. ⟨10.1016/j.ymben.2015.03.019⟩ Article dans une revue (article de synthèse) istex hal-01163453v1
Use of fermentative metabolites for heterotrophic microalgae growth: Yields and kinetics Violette Turon,Caroline Baroukh,Eric Trably,Eric Latrille,Eric Fouillandet al. Bioresource Technology, 2015, 175, pp.342-349. ⟨10.1016/j.biortech.2014.10.114⟩ Article dans une revue hal-01165732v1
DRUM: A new framework for metabolic modeling under non-balanced growth. Application to the carbon metabolism of unicellular microalgae Caroline Baroukh,Rafael Munoz Tamayo,Jean-Philippe Steyer,Olivier Bernard PLoS ONE, 2014, 9 (8), pp.e104499. ⟨10.1371/journal.pone.0104499⟩ Article dans une revue hal-01123224v1
ESCAPE: database for integrating high-content published data collected from human and mouse embryonic stem cells H. Xu,Caroline Baroukh,R. Dannenfelser,E. Y. Chen,C. M. Tanet al. Database - The journal of Biological Databases and Curation, 2013, 2013 (bat045), pp.1-12. ⟨10.1093/database/bat045⟩ Article dans une revue hal-02644065v1
Genes2WordCloud: a quick way to identify biological themes from gene lists and free text Caroline Baroukh,Sherry Jenkins,Ruth Dannenfelser,Avi Ma'Ayan Source Code for Biology and Medicine, 2011, 6 (15), pp.1-15. ⟨10.1186/1751-0473-6-15⟩ Article dans une revue hal-02646115v1

Pré-publication, Document de travail (1)

Metabolic modeling of a plant-pathogen interaction quantifies the metabolic bottlenecks underlying bacterial wilt Léo Gerlin,Stéphane Genin,Caroline Baroukh 2025 Pré-publication, Document de travail hal-04904052v1

HDR (1)

Modélisation métabolique d'organismes photosynthétiques et leurs microbes associés Caroline Baroukh Sciences du Vivant [q-bio]. Université Paul Sabatier (Toulouse 3), 2022 HDR tel-04834658v1

Communication dans un congrès (17)

MULTI-ORGAN GENOME-SCALE METABOLIC MODELING OF A TOMATO PLANT AT VEGETATIVE GROWTH STAGE Léo Gerlin,Antoine Escourrou,Ludovic Cottret,Stéphane Genin,Caroline Baroukh 13ème Congrès international de la SFBV, Société Française de la Biologie Végétale, Aug 2022, Montpellier, France Communication dans un congrès hal-04718279v1
Multi-organ genome-scale metabolic modeling of tomato plant Leo Gerlin,Antoine Escourrou,Ludovic Cottret,Stephane Genin,Caroline Baroukh 7th Conference on Constraint-Based Reconstruction and Analysis (COBRA 2021), Mar 2021, Virtual, France Communication dans un congrès hal-03350567v1
Investigation of the metabolic network of Xylella fastidiosa responsible of its fastidious growth Leo Gerlin,Ludovic Cottret,Sophie Cesbron,Geraldine G. Taghouti,Marie-Agnès Jacqueset al. 3rd European Conference on Xylella fastidiosa and the final meeting of the XF-ACTORS project, Apr 2021, Virtual, France Communication dans un congrès hal-03350588v1
Learning Boolean controls in regulated metabolic networks: a case-study Kerian Thuillier,Caroline Baroukh,Alexander Bockmayr,Ludovic Cottret,Loïc Paulevéet al. CMSB 2021 - 19th International Conference on Computational Methods in Systems Biology, 2021, Bordeaux, France. pp.159-180, ⟨10.1007/978-3-030-85633-5_10⟩ Communication dans un congrès hal-03207589v3
Exploration of the growth-virulence trade-off in the plant pathogen Ralstonia solanacearum species complex Caroline Baroukh,Emma Pires,Ludovic Cottret,Remi Peyraud,Stéphane Genin MicrobiOccitanie 2019 - Rencontre des Microbiologistes Région Occitanie, Feb 2019, Montpellier, France Communication dans un congrès hal-02786961v1
Genome-scale investigation of the metabolic determinants generating bacterial fastidious growth Leo Gerlin,Ludovic Cottret,Sophie Cesbron,Géraldine Taghouti,Marie-Agnès Jacqueset al. Symposium on Synthetic and Systemic Biology, Nov 2019, Bordeaux, France Communication dans un congrès hal-03350558v1
Modélisation métabolique et interaction plante-pathogènes Caroline Baroukh Séminaire INRA SPE, Dec 2018, Lyon, France Communication dans un congrès hal-02787691v1
Metabolic modeling of C. sorokiniana diauxic heterotrophic growth Caroline Baroukh,Olivier Bernard 6. IFAC Conference on Foundations of Systems Biology in Engineering (FOSBE), Oct 2016, Magdeburg, Germany. pp.330-335, ⟨10.1016/j.ifaco1.2016.12.148⟩ Communication dans un congrès hal-01602803v1
Dynamic Flux Balance Analysis of the Metabolism of Microalgae under a Diurnal Light Cycle Caroline Baroukh,Jean Philippe Steyer,Olvier Bernard,Benoit Chachuat DYCOPS-CAB 2016 - 11th IFAC Symposium on Dynamics and Control of Process Systems, Including Biosystems DYCOPS-CAB 2016, International Federation of Automatic Control (IFAC). AUT., Jun 2016, Trondheim, Norway. pp.791 - 796, ⟨10.1016/j.ifacol.2016.07.285⟩ Communication dans un congrès hal-01413531v1
Bayesian optimization with dimension scheduling: application to biological systems Doniyor Ulmasov,Caroline Baroukh,Benoit Chachuat,Marc Peter Deisenroth,Ruth Misener 26. European Symposium on Computer Aided Process Engineering. ESCAPE 26, Jun 2016, Portorož, Slovenia. 2423 p., ⟨10.1016/B978-0-444-63428-3.50180-6⟩ Communication dans un congrès hal-01602485v1
Metabolic modeling of microalgae growth and lipids production during day/night cycles and nitrogen starvation Caroline Baroukh,Rafael Munoz Tamayo,Jean-Philippe Steyer,Olivier Bernard Metabolic Pathway Analysis 2015, Jun 2015, Braga, Portugal Communication dans un congrès hal-01603450v1
A new approach to unravel metabolic regulations. Application to microalgae growth and lipid production under day/night cycles and nitrogen starvation Caroline Baroukh,Olivier Bernard,Jean-Philippe Steyer,Rafael Munoz Tamayo,Benoit Chachuat BioSynSys 2015 : 1er colloque du GDR "Biologie de Synthèse et des Systèmes", Sep 2015, Paris, France Communication dans un congrès hal-01601441v1
A new framework for metabolic modeling under non-balanced growth. Application to carbon metabolism of unicellular microalgae Caroline Baroukh,Rafael Munoz Tamayo,Jean-Philippe Steyer,Olivier Bernard CAB 2013 - International on Computer Applications to Biotechnology, Dec 2013, Mumbai, India Communication dans un congrès hal-00856042v2
A new framework for metabolic modelling under non-balanced growth. Application to photoautotrophic microalgae in day/night cycle. Caroline Baroukh,Rafael Munoz Tamayo,Jean-Philippe Steyer,Olivier Bernard Metabolic Pathway Analysis 2013, Sep 2013, Oxford, United Kingdom Communication dans un congrès hal-01601779v1
A new modelling framework: application to microalgae growth Caroline Baroukh Young Algaeneers Symposium (YAS2012), 2012, Wageningen, Netherlands Communication dans un congrès hal-00848381v1
Process calculi for systems biology Caroline Baroukh,Anthony Rowe,Yike Guo ACM International Conference on Bioinformatics and Computational Biology, 2010, Niagara Falls, United States. ⟨10.1145/1854776.1854869⟩ Communication dans un congrès hal-02751394v1
Process Calculi for Systems Biology and applications in severe asthma Caroline Baroukh,Anthony Rowe,Yike Guo 2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW), Dec 2010, Hong-Kong, Hong Kong SAR China. ⟨10.1109/BIBMW.2010.5703802⟩ Communication dans un congrès hal-02752857v1

Chapitre d'ouvrage (1)

Plant genome-scale metabolic networks Léo Gerlin,Clément Frainay,Fabien Jourdan,Caroline Baroukh,Sylvain Prigent Science Direct. Plant Metabolomics in full swing, 98, 2021, Advances in Botanical Research, ⟨10.1016/bs.abr.2020.09.021⟩ Chapitre d'ouvrage hal-03149497v1

Poster de conférence (1)

Metabolic modelling of trophic interactions between a plant pathogen and its host plant Caroline Baroukh,Rémi Peyraud,Ludovic Cottret,Stéphane Genin International Plant Systems Biology, Sep 2018, Roscoff, France. , 2018 Poster de conférence hal-02786492v1

Thèse (1)

Metabolic modeling under non-balanced growth. Application to microalgae for biofuels production Caroline Baroukh Life Sciences [q-bio]. Université Montpellier 2 (Sciences et Techniques), 2014. English. ⟨NNT : ⟩ Thèse tel-02794871v2