Caroline Menguy

Documents

Publications

A Super-Pangenome for Cultivated Citrus Reveals Evolutive Features During the Allopatric Phase of Their Reticulate Evolution

Gaetan Droc , Delphine Giraud , Caroline Belser , Karine Labadie , Simone Duprat et al.

Plant Biotechnology Journal, 2026, 24 (5), pp.3345-3367. ⟨10.1111/pbi.70553⟩

Article dans une revue hal-05247455v1

Next release of the European Marine Omics Biodiversity Observation Network (EMO BON) shotgun metagenomic data from water and sediment samples (Release 2)

Ioulia Santi , Christina Pavloudi , Maria Abagnale , Iñigo Azua , Zuriñe Baña et al.

Biodiversity Data Journal, 2026, 14, pp.e178484. ⟨10.3897/BDJ.14.e178484⟩

Article dans une revue (data paper) hal-05480555v1

Plant Genetic Bases Associated With Microbiota Descriptors Shed Light Into a Novel Holobiont Generalist Genes Theory

Loeiz Maillet , Manon Norest , Adam Kautsky , Anna Geraci , Elisabetta Oddo et al.

Environmental Microbiology, 2025, 27 (5), pp.e70108. ⟨10.1111/1462-2920.70108⟩

Article dans une revue hal-05090352v1

Unravelling genomic drivers of speciation in Musa through genome assemblies of wild banana ancestors

Guillaume Martin , Benjamin Istace , Franc-Christophe Baurens , Caroline Belser , Catherine Hervouet et al.

Nature Communications, 2025, 16, pp.961. ⟨10.1038/s41467-025-56329-4⟩

Article dans une revue hal-04911301v1

The Silene latifolia genome and its giant Y chromosome

Carol Moraga , Catarina Branco , Quentin Rougemont , Paris Veltsos , Pavel Jedlička et al.

Science, 2025, 387 (6734), pp.630-636. ⟨10.1126/science.adj7430⟩

Article dans une revue hal-04293712v1

First release of the European marine omics biodiversity observation network (EMO BON) shotgun metagenomics data from water and sediment samples

Christina Pavloudi , Ioulia Santi , Iñigo Azua , Zuriñe Baña , Mauro Bastianini et al.

Biodiversity Data Journal, 2025, 13, pp.e143585. ⟨10.3897/BDJ.13.e143585⟩

Article dans une revue (data paper) cea-05046943v1

Omics exploration of deep-sea biodiversity: data from the “Pourquoi Pas les Abysses?” and eDNAbyss projects

Sophie Arnaud-Haond , Blandine Trouche , Cathy Liautard-Haag , Karine Alain , Johanne Aubé et al.

Scientific Data , 2025, 12 (1), pp.1982. ⟨10.1038/s41597-025-06009-1⟩

Article dans une revue hal-05434404v1

On the way to diploidization and unexpected ploidy in the grass Sporobolus section Spartina mesopolyploids

Armel Salmon , Yan Hao , Morgane Milin , Oscar Lima , Armand Cave-Radet et al.

Nature Communications, 2025, 16 (1), pp.1997. ⟨10.1038/s41467-025-56983-8⟩

Article dans une revue hal-04976572v1

ERGA-BGE reference genome of Eunicella cavolini, an IUCN Near Threatened Gorgonian of the Mediterranean Sea

Didier Aurelle , Dorian Guillemain , Frédéric Zuberer , Denys Malengros , Astrid Böhne et al.

Open Research Europe, 2025, 5, pp.323. ⟨10.12688/openreseurope.21514.1⟩

Article dans une revue hal-05505155v1

Emergent patterns of patchiness differ between physical and planktonic properties in the ocean

Patrick Clifton Gray , Emmanuel Boss , Guillaume Bourdin , A Bourdais , C Bowler et al.

Nature Communications, 2025, 16 (1), pp.1808. ⟨10.1038/s41467-025-56794-x⟩

Article dans une revue hal-04976225v1

Alternating between even and odd ploidy levels switches on and off the recombination control, even near the centromeres

Franz Boideau , Virginie Huteau , Loeiz Maillet , Anael Brunet , Olivier Coriton et al.

The Plant cell, 2024, 36 (10), pp.4472-4490. ⟨10.1093/plcell/koae208⟩

Article dans une revue hal-04682098v1

Unzipped genome assemblies of polyploid root-knot nematodes reveal unusual and clade-specific telomeric repeats

Ana Paula Zotta Mota , Georgios Koutsovoulos , Laetitia Perfus-Barbeoch , Evelin Despot-Slade , Karine Labadie et al.

Nature Communications, 2024, 15 (1), pp.773. ⟨10.1038/s41467-024-44914-y⟩

Article dans une revue hal-04489824v1

High diversity of crustose coralline algae microbiomes across species and islands, and implications for coral recruits

Corentin Hochart , Héloïse Rouzé , Béatrice Rivière , Hans-Joachim Ruscheweyh , Laetitia Hédouin et al.

Environmental Microbiome, 2024, 19 (1), pp.112. ⟨10.1186/s40793-024-00640-y⟩

Article dans une revue hal-04888274v1

The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics

Ann Mc Cartney , Giulio Formenti , Alice Mouton , Diego de Panis , Luísa Marins et al.

npj Biodiversity, 2024, 3 (1), pp.28. ⟨10.1038/s44185-024-00054-6⟩

Article dans une revue hal-05248491v1

Host transcriptomic plasticity and photosymbiotic fidelity underpin $Pocillopora$ acclimatization across thermal regimes in the Pacific Ocean

Eric J Armstrong , Julie Lê-Hoang , Quentin Carradec , Jean-Marc Aury , Benjamin Noel et al.

Nature Communications, 2023, 14, pp.3056. ⟨10.1038/s41467-023-38610-6⟩

Article dans une revue cea-04171796v1

Diversity of the Pacific Ocean coral reef microbiome

Pierre Galand , Hans-Joachim Ruscheweyh , Guillem Salazar , Corentin Hochart , Nicolas Henry et al.

Nature Communications, 2023, 14 (1), pp.3039. ⟨10.1038/s41467-023-38500-x⟩

Article dans une revue hal-04176291v1

Integrative omics framework for characterization of coral reef ecosystems from the Tara Pacific expedition

Caroline Belser , Julie Poulain , Karine Labadie , Frederick Gavory , Adriana Alberti et al.

Scientific Data , 2023, 10 (1), pp.326. ⟨10.1038/s41597-023-02204-0⟩

Article dans une revue hal-04176297v3

Distribution and genomic variation of ammonia-oxidizing archaea in abyssal and hadal surface sediments

Blandine Trouche , Clemens Schauberger , Feriel Bouderka , Jean-Christophe Auguet , Caroline Belser et al.

ISME Communications, 2023, 3 (1), pp.133. ⟨10.1038/s43705-023-00341-6⟩

Article dans une revue hal-04388214v1

Oxford Nanopore and Bionano Genomics technologies evaluation for plant structural variation detection

Aurélie Canaguier , Romane Guilbaud , Erwan Denis , Ghislaine Magdelenat , Caroline Belser et al.

BMC Genomics, 2022, 23 (1), pp.317. ⟨10.1186/s12864-022-08499-4⟩

Article dans une revue hal-03977388v1

Terrestrial and marine influence on atmospheric bacterial diversity over the north Atlantic and Pacific Oceans

Naama Lang-Yona , J. Michel Flores , Rotem Haviv , Adriana Alberti , Julie Poulain et al.

Communications Earth & Environment, 2022, 3 (1), pp.121. ⟨10.1038/s43247-022-00441-6⟩

Article dans une revue hal-04382382v1

Long-read and chromosome-scale assembly of the hexaploid wheat genome achieves high resolution for research and breeding

Jean-Marc Aury , Stefan Engelen , Benjamin Istace , Cécile Monat , Pauline Lasserre-Zuber et al.

GigaScience, 2022, 11, pp.1-18. ⟨10.1093/gigascience/giac034⟩

Article dans une revue hal-03658639v1

Genomic adaptation of the picoeukaryote $Pelagomonas\ calceolata$ to iron-poor oceans revealed by a chromosome-scale genome sequence

Nina Guérin , Marta Ciccarella , Elisa Flamant , Paul Frémont , Sophie Mangenot et al.

Communications Biology, 2022, 5 (1), pp.983. ⟨10.1038/s42003-022-03939-z⟩

Article dans une revue cea-03791710v1

Epigenomic and structural events preclude recombination in Brassica napus

Franz Boideau , Gautier Richard , Olivier Coriton , Virginie Huteau , Caroline Belser et al.

New Phytologist, 2022, 234 (2), pp.545-559. ⟨10.1111/nph.18004⟩

Article dans une revue hal-03651949v1

Population genomics of apricots unravels domestication history and adaptive events

Alexis Groppi , Shuo Liu , A. Cornille , David Tricon , Quynh Trang Bui et al.

Nature Communications, 2021, 12 (1), pp.3956. ⟨10.1038/s41467-021-24283-6⟩

Article dans une revue hal-03282504v1

Diversity and biogeography of bathyal and abyssal seafloor bacteria and archaea along a Mediterranean-Atlantic gradient

Blandine Trouche , Miriam Brandt , Caroline Belser , Covadonga Orejas , Stephane Pesant et al.

Frontiers in Microbiology, 2021, 12, pp.702016. ⟨10.3389/fmicb.2021.702016⟩

Article dans une revue hal-03589735v1

Telomere-to-telomere gapless chromosomes of banana using nanopore sequencing

Caroline Belser , Franc-Christophe Baurens , Benjamin Noel , Guillaume Martin , Corinne Cruaud et al.

Communications Biology, 2021, 4 (1), ⟨10.1038/s42003-021-02559-3⟩

Article dans une revue hal-03352701v1

Evaluating sediment and water sampling methods for the estimation of deep-sea biodiversity using environmental DNA

Miriam I Brandt , Florence Pradillon , Blandine Trouche , Nicolas Henry , Cathy Liautard-Haag et al.

Scientific Reports, 2021, 11 (1), pp.7856. ⟨10.1038/s41598-021-86396-8⟩

Article dans une revue hal-03198097v1

Chromosome-scale assembly of the yellow mealworm genome

Evangelia Eleftheriou , Jean-Marc Aury , Benoît Vacherie , Benjamin Istace , Caroline Belser et al.

Open Research Europe, 2021, 1, pp.94. ⟨10.12688/openreseurope.13987.3⟩

Article dans une revue hal-03770436v1

Sequencing and Chromosome-Scale Assembly of Plant Genomes, Brassica rapa as a Use Case

Benjamin Istace , Caroline Belser , Cyril Falentin , Karine Labadie , Franz Boideau et al.

Biology, 2021, 10 (8), ⟨10.3390/biology10080732⟩

Article dans une revue hal-03318024v1

Genome Size Variation and Comparative Genomics Reveal Intraspecific Diversity in Brassica rapa

Julien Boutte , Loeiz Maillet , Thomas Chaussepied , Sébastien Letort , Jean-Marc Aury et al.

Frontiers in Plant Science, 2020, 11, pp.577536. ⟨10.3389/fpls.2020.577536⟩

Article dans une revue hal-03137565v1

Long-read assembly of the Brassica napus reference genome Darmor-bzh

Mathieu Rousseau-Gueutin , Caroline Belser , Corinne Da silva , Gautier Richard , Benjamin Istace et al.

GigaScience, 2020, 9 (12), pp.giaa137. ⟨10.1093/gigascience/giaa137⟩

Article dans une revue (data paper) hal-03283975v1

BiSCoT: improving large eukaryotic genome assemblies with optical maps

Benjamin Istace , Caroline Belser , Jean-Marc Aury

PeerJ, 2020, 8, pp.e10150. ⟨10.7717/peerj.10150⟩

Article dans une revue hal-04290135v1

A reference genome for pea provides insight into legume genome evolution

Jonathan J. Kreplak , Mohammed-Amin Madoui , Petr Cápal , Petr Novak , Karine Labadie et al.

Nature Genetics, 2019, 51 (9), pp.1411-1422. ⟨10.1038/s41588-019-0480-1⟩

Article dans une revue hal-02278272v1

The Tara Pacific expedition-A pan-ecosystemic approach of the "-omics" complexity of coral reef holobionts across the Pacific Ocean

Serge Planes , Denis Allemand , Sylvain Agostini , Bernard Banaigs , Emilie Boissin et al.

PLoS Biology, 2019, 17 (9), pp.e3000483. ⟨10.1371/journal.pbio.3000483⟩

Article dans une revue hal-02402685v1

Massive postglacial gene flow between European white oaks uncovered genes underlying species barriers

Thibault Leroy , Quentin Rougemont , Jean-Luc Dupouey , Catherine Bodenes , Céline Lalanne et al.

New Phytologist, 2019, online fisrt, pp.1-15. ⟨10.1111/nph.16039⟩

Article dans une revue hal-02622295v1

Draft Genome Sequence of Tubulinosema ratisbonensis , a Microsporidian Species Infecting the Model Organism Drosophila melanogaster

Valérie Polonais , Sebastian Niehus , Ivan Wawrzyniak , Adrien Franchet , Christine Gaspin et al.

Microbiology Resource Announcements, 2019, 8 (31), ⟨10.1128/MRA.00077-19⟩

Article dans une revue hal-02276377v1

Oak genome reveals facets of long lifespan

Christophe Plomion , Jean-Marc Aury , Joelle Amselem , Thibault Leroy , Florent Murat et al.

Nature Plants, 2018, 4 (7), pp.440-452. ⟨10.1038/s41477-018-0172-3⟩

Article dans une revue hal-01820559v1

Chromosome-scale assemblies of plant genomes using nanopore long reads and optical maps

Caroline Belser , Benjamin Istace , Erwan Denis , Marion Dubarry , Franc-Christophe Baurens et al.

Nature Plants, 2018, 4 (11), pp.879-887. ⟨10.1038/s41477-018-0289-4⟩

Article dans une revue hal-01977046v1

Two genomes of highly polyphagous lepidopteran pests (Spodoptera frugiperda, Noctuidae) with different host-plant ranges

Anaïs Gouin , Anthony Bretaudeau , Kiwoong Nam , Sylvie Gimenez , Jean-Marc Aury et al.

Scientific Reports, 2017, 7 (1), pp.1-12. ⟨10.1038/s41598-017-10461-4⟩

Article dans une revue hal-01633879v1

Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition

Adriana A. Alberti , Julie Poulain , Stefan Engelen , Karine Labadie , Sarah Romac et al.

Scientific Data , 2017, 4, ⟨10.1038/sdata.2017.93⟩

Article dans une revue (data paper) hal-01771844v1

The oak gene expression atlas: insights into Fagaceae genome evolution and the discovery of genes regulated during bud dormancy release

Isabelle Lesur , Grégoire G. Le Provost , Pascal Bento , Corinne da Silva , Jean-Charles Leplé et al.

BMC Genomics, 2015, 16 (1), pp.112. ⟨10.1186/s12864-015-1331-9⟩

Article dans une revue hal-02285504v1

Genome assembly using Nanopore-guided long and error-free DNA reads

Mohammed-Amin Madoui , Stefan Engelen , Corinne Cruaud , Caroline Belser , Laurie Bertrand et al.

BMC Genomics, 2015, 16 (1), pp.327. ⟨10.1186/s12864-015-1519-z⟩

Article dans une revue hal-04361027v1

Decoding the oak genome: public release of sequence data, assembly, annotation and publication strategies.

Christophe Plomion , Jean-Marc Aury , Joëlle Amselem , Tina Alaeitabar , Valérie Barbe et al.

Molecular Ecology Resources, 2015, 16 (1), pp.254-265. ⟨10.1111/1755-0998.12425⟩

Article dans une revue istex hal-01579667v1

Comparison of library preparation methods reveals their impact on interpretation of metatranscriptomic data

Adriana A. Alberti , Caroline Belser , Stefan Engelen , Laurie Bertrand , Celine Orvain et al.

BMC Genomics, 2014, 15, pp.912. ⟨10.1186/1471-2164-15-912⟩

Article dans une revue hal-02503091v1

The DNA sequence and analysis of human chromosome 14

Roland Heilig , Ralph Eckenberg , Jean-Louis Petit , Núria Fonknechten , Corinne da Silva et al.

Nature, 2003, 421 (6923), pp.601-607. ⟨10.1038/nature01348⟩

Article dans une revue hal-04312826v1

The JEDI marker as a universal measure of planetary biodiversity

Taylor Priest , Nicolas Henry , Thomas Weber , Laurine Planat , Coralie Rousseau et al.

2026

Pré-publication, Document de travail hal-05507468v1

The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics

Ann M Mc Cartney , Giulio Formenti , Alice Mouton , Diego de Panis , Luísa S Marins et al.

2024

Pré-publication, Document de travail hal-04406124v1

From genome wide SNPs to genomic islands of differentiation: the quest for species diagnostic markers in two scleractinian corals,PocilloporaandPorites

Romane Deshuraud , Alexandre Ottaviani , Julie Poulain , Marine Leprêtre , Odette Beluche et al.

2023

Pré-publication, Document de travail (working paper) hal-04195332v1

Approches bioinformatiques pour l'exploration des génomes et de la biodiversité

Caroline Belser

Génomique, Transcriptomique et Protéomique [q-bio.GN]. Université Paris-Saclay, 2022. Français. ⟨NNT : 2022UPASB073⟩

Thèse tel-03994054v1

TARA Pacific bleaching prevalence of sampling sites (Islands)

Christian R Voolstra , Benjamin C.C Hume , Kyra Pikaar , Guillaume Bourdin , Stéphane Pesant et al.

2022, ⟨10.5281/zenodo.6511406⟩

Autre publication scientifique hal-04384087v1

TARA Pacific CTAX colony morphological annotations release version 1_1

Guinther Mitushasi , Sylvain Algostini , Benjamin Hume , Yuko Kitano , Julie Poulain et al.

2022, ⟨10.5281/zenodo.6384774⟩

Autre publication scientifique hal-04384090v1

Tara Pacific V9 18S rDNA metabarcoding dataset

Frédéric Mahé , Nicolas Henry , Cédric Berney , Julie Poulain , Sarah Romac et al.

2021, ⟨10.5281/zenodo.5041070⟩

Autre publication scientifique hal-04384095v1

Tara Pacific ITS2 Symbiodiniaceae data release version 1

Benjamin C.C. Hume , Julie Poulain , Stéphane Pesant , Caroline Belser , Hans-Joachim Ruscheweyh et al.

2020, ⟨10.5281/zenodo.4061797⟩

Autre publication scientifique hal-04384112v1

Tara Pacific 16S rRNA data analysis release

Hans-Joachim Ruscheweyh , Guillem Salazar , Julie Poulain , Caroline Belser , Quentin Clayssen et al.

2020, ⟨10.5281/ZENODO.4073269⟩

Autre publication scientifique hal-04384109v1

Tara Pacific metabarcoding sequencing (16S, 18S, ITS2) reference & replication tables version 1

Benjamin C.C. Hume , Julie Poulain , Stéphane Pesant , Caroline Belser , Hans-Joachim Ruscheweyh et al.

2020, ⟨10.5281/ZENODO.4073035⟩

Autre publication scientifique hal-04384100v1

Tara Pacific 18S-based coral host genetic analysis data release version 1

Benjamin C.C. Hume , Julie Poulain , Stéphane Pesant , Caroline Belser , Hans-Joachim Ruscheweyh et al.

2020, ⟨10.5281/zenodo.4265266⟩

Autre publication scientifique hal-04384097v1

European mink (Mustela lutreola) reference genome and population genomics

Alice Mouton , Christine Fournier-Chambrillon , Pascal Fournier , Jakub Skorupski , Przemysław Śmietana et al.

34th European Mustelid Colloquium, Sep 2022, Online conference, France

Communication dans un congrès hal-03787589v1

The Pisum Genus: Getting out of Pea Soup!

Jonathan Kreplak , Mohammed-Amin Madoui , Karine Labadie , Grégoire Aubert , Petr Capal et al.

Plant and Animal Genome XXVI Conference, 2018, San Diego (CA), United States

Communication dans un congrès hal-04331722v1

The pea genome

Jonathan Kreplak , Mohammed-Amin Madoui , Karine Labadie , Gregoire Aubert , Philippe Bayer et al.

8. International Conference on Legume Genetics and Genomics (ICLGG), Noble Research Institute., Sep 2017, Siófok, Hungary. 128 p

Communication dans un congrès hal-02735156v1

Towards the genome sequence of pea : a tribute to Mendel

Mohammed-Amin Madoui , K. Labadie , Jonathan Kreplak , Gregoire Aubert , Léo d'Agata et al.

2. International Legume Society Conference - Legumes for a Sustainable World, Legume Society., Oct 2016, Lisbonne, Portugal. 358 p

Communication dans un congrès hal-01602206v1

Genomic resources for functional analysis in Medicago truncatula and related crop species

Frederic Debellé , C. Belser , J.M. Aury , K. Labadie , Brice Roux et al.

6. International Conference on Legume Genetics and Genomics, International Crops Research Institute for the Semi-Arid Tropics, CGIAR (ICRISAT). Patancheru, IND., Oct 2012, Hyderabad, India

Communication dans un congrès hal-02747944v1

Long DNA technologies evaluation for plant structural variations detection: Nanopore ONT sequencing vs Bionano Genomics optical mapping

Aurélie Canaguier , Erwan Denis , Romane Guilbaud , Ghislaine Magdelenat , Caroline Belser et al.

- Plant and Animal Genome XXVIII Conference, 2020, San Diego, CA, United States

Poster de conférence hal-04331757v1

LONG DNA TECHNOLOGIES EVALUATION FOR PLANT STRUCTURAL VARIATIONS DETECTION : NANOPORE ONT SEQUENCING vs BIONANO GENOMICS OPTICAL MAPPING

Aurélie Canaguier , Erwan Denis , Romane Guilbaud , Ghislaine Magdelenat , Caroline Belser et al.

Plant and Animal Genome XXVIII Conference, Jan 2020, San Diego, United States.

Poster de conférence hal-02925940v1

Chromosome-scale assemblies of Brassica oleracea and Brassica rapa using nanopore long reads and optical maps

Caroline Belser , Bejamin Istace , Denis Engemann , M Dubarry , Cyril Falentin et al.

21st Crucifer Genetics Conference on Brassica - Bassica 2018, Jul 2018, Saint-Malo, France

Poster de conférence hal-03318378v1

Optical Mapping with the Saphyr System on Plant Genomes

Erwan Denis , Caroline Belser , Wahiba Berrabah , Ghislaine Magdelenat , Corinne Cruaud et al.

- Plant and Animal Genome XXVI Conference, 2018, San Diego (CA), United States

Poster de conférence hal-04331771v1

Genome assembly using Nanopore-guided Long and Error-free DNA reads

Guillaume Gautreau , Mohammed‐amin Madoui , Stefan Engelen , Adriana A. Alberti , Caroline Belser et al.

Journées Ouvertes en Biologie, Informatique et Mathématiques 2015, Jul 2015, Clermont-Ferrand, France

Poster de conférence hal-04862540v1

From whole-genome scans for divergence to the discovery of speciation genes in oaks

Thibault Leroy , Jean Marc Aury , Catherine Bodenes-Brezard Bodénès , Laure Villate , Grégoire G. Le Provost et al.

15. Congress of the European Society for Evolutionary Biology (ESEB), Aug 2015, Lausanne, Switzerland. , 1 p., 2015

Poster de conférence hal-02797182v1

Chargement...

Caroline Menguy

Publications

Publications

A Super-Pangenome for Cultivated Citrus Reveals Evolutive Features During the Allopatric Phase of Their Reticulate Evolution

Next release of the European Marine Omics Biodiversity Observation Network (EMO BON) shotgun metagenomic data from water and sediment samples (Release 2)

Plant Genetic Bases Associated With Microbiota Descriptors Shed Light Into a Novel Holobiont Generalist Genes Theory

Unravelling genomic drivers of speciation in Musa through genome assemblies of wild banana ancestors

The Silene latifolia genome and its giant Y chromosome

First release of the European marine omics biodiversity observation network (EMO BON) shotgun metagenomics data from water and sediment samples

Omics exploration of deep-sea biodiversity: data from the “Pourquoi Pas les Abysses?” and eDNAbyss projects

On the way to diploidization and unexpected ploidy in the grass Sporobolus section Spartina mesopolyploids

ERGA-BGE reference genome of Eunicella cavolini, an IUCN Near Threatened Gorgonian of the Mediterranean Sea

Emergent patterns of patchiness differ between physical and planktonic properties in the ocean

Alternating between even and odd ploidy levels switches on and off the recombination control, even near the centromeres

Unzipped genome assemblies of polyploid root-knot nematodes reveal unusual and clade-specific telomeric repeats

High diversity of crustose coralline algae microbiomes across species and islands, and implications for coral recruits

The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics

Host transcriptomic plasticity and photosymbiotic fidelity underpin $Pocillopora$ acclimatization across thermal regimes in the Pacific Ocean

Diversity of the Pacific Ocean coral reef microbiome

Integrative omics framework for characterization of coral reef ecosystems from the Tara Pacific expedition

Distribution and genomic variation of ammonia-oxidizing archaea in abyssal and hadal surface sediments

Oxford Nanopore and Bionano Genomics technologies evaluation for plant structural variation detection

Terrestrial and marine influence on atmospheric bacterial diversity over the north Atlantic and Pacific Oceans

Long-read and chromosome-scale assembly of the hexaploid wheat genome achieves high resolution for research and breeding

Genomic adaptation of the picoeukaryote $Pelagomonas\ calceolata$ to iron-poor oceans revealed by a chromosome-scale genome sequence

Epigenomic and structural events preclude recombination in Brassica napus

Population genomics of apricots unravels domestication history and adaptive events

Diversity and biogeography of bathyal and abyssal seafloor bacteria and archaea along a Mediterranean-Atlantic gradient

Telomere-to-telomere gapless chromosomes of banana using nanopore sequencing

Evaluating sediment and water sampling methods for the estimation of deep-sea biodiversity using environmental DNA

Chromosome-scale assembly of the yellow mealworm genome

Sequencing and Chromosome-Scale Assembly of Plant Genomes, Brassica rapa as a Use Case

Genome Size Variation and Comparative Genomics Reveal Intraspecific Diversity in Brassica rapa

Long-read assembly of the Brassica napus reference genome Darmor-bzh

BiSCoT: improving large eukaryotic genome assemblies with optical maps

A reference genome for pea provides insight into legume genome evolution

The Tara Pacific expedition-A pan-ecosystemic approach of the "-omics" complexity of coral reef holobionts across the Pacific Ocean

Massive postglacial gene flow between European white oaks uncovered genes underlying species barriers

Draft Genome Sequence of Tubulinosema ratisbonensis , a Microsporidian Species Infecting the Model Organism Drosophila melanogaster

Oak genome reveals facets of long lifespan

Chromosome-scale assemblies of plant genomes using nanopore long reads and optical maps

Two genomes of highly polyphagous lepidopteran pests (Spodoptera frugiperda, Noctuidae) with different host-plant ranges

Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition

The oak gene expression atlas: insights into Fagaceae genome evolution and the discovery of genes regulated during bud dormancy release

Genome assembly using Nanopore-guided long and error-free DNA reads

Decoding the oak genome: public release of sequence data, assembly, annotation and publication strategies.

Comparison of library preparation methods reveals their impact on interpretation of metatranscriptomic data

The DNA sequence and analysis of human chromosome 14

The JEDI marker as a universal measure of planetary biodiversity

The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics

From genome wide SNPs to genomic islands of differentiation: the quest for species diagnostic markers in two scleractinian corals,<i>Pocillopora</i>and<i>Porites</i>

Approches bioinformatiques pour l'exploration des génomes et de la biodiversité

TARA Pacific bleaching prevalence of sampling sites (Islands)

TARA Pacific CTAX colony morphological annotations release version 1_1

Tara Pacific V9 18S rDNA metabarcoding dataset

Tara Pacific ITS2 Symbiodiniaceae data release version 1

Tara Pacific 16S rRNA data analysis release

Tara Pacific metabarcoding sequencing (16S, 18S, ITS2) reference & replication tables version 1

Tara Pacific 18S-based coral host genetic analysis data release version 1

European mink (Mustela lutreola) reference genome and population genomics

The Pisum Genus: Getting out of Pea Soup!

The pea genome

Towards the genome sequence of pea : a tribute to Mendel

Genomic resources for functional analysis in <em>Medicago truncatula</em> and related crop species

Long DNA technologies evaluation for plant structural variations detection: Nanopore ONT sequencing vs Bionano Genomics optical mapping

LONG DNA TECHNOLOGIES EVALUATION FOR PLANT STRUCTURAL VARIATIONS DETECTION : NANOPORE ONT SEQUENCING vs BIONANO GENOMICS OPTICAL MAPPING

Chromosome-scale assemblies of Brassica oleracea and Brassica rapa using nanopore long reads and optical maps

Optical Mapping with the Saphyr System on Plant Genomes

Genome assembly using Nanopore-guided Long and Error-free DNA reads

From whole-genome scans for divergence to the discovery of speciation genes in oaks