Cécile Donnadieu Sunflower Ecosystem Services GenomicistLIPME Toulouse ASTR team

Publications

Article dans une revue (45)

A comprehensive genome-wide scan for parent-of-origin expressed genes in the pig clarifies the conservation landscape of genomic imprinting Mathilde Perret,Nathalie Iannuccelli,Sophie Leroux,Katia Fève,Patrice Dehaiset al. Genetics Selection Evolution, 2026, 58 (1), pp.18. ⟨10.1186/s12711-026-01031-2⟩ Article dans une revue hal-05560333v1
High-quality chromosome-scale genome assemblies of 29 maize inbred lines of European breeding relevance Camille Marcuzzo,Clément Birbes,Camille Eché,Arnaud Di Franco,Thomas Farautet al. Scientific Data , 2026, Online ahead of print. ⟨10.1038/s41597-026-07055-z⟩ Article dans une revue (data paper) hal-05606755v1
Assembly of a pangenome uncovers novel non-reference unique insertion sequences in cattle highlighting their genetic diversity Valentin Sorin,Florian Besnard,Aurélien Capitan,Cécile Grohs,Maulana Mughitz Najiet al. Journal of Animal Science and Biotechnology , 2026, 17 (1), pp.47. ⟨10.1186/s40104-026-01373-3⟩ Article dans une revue hal-05543227v1
An optimized protocol to detect high‐throughput DNA methylation from custom targeted sequences on 96 samples simultaneously Nathalie Iannuccelli,Sophie Valière,Julien Sarry,Cécile Donnadieu,Julie Demars FEBS Open Bio, 2025, ⟨10.1002/2211-5463.70093⟩ Article dans une revue hal-05228548v1
Whole genome short read data from 567 bulls of 14 breeds provides insight into genetic diversity of French cattle Mekki Boussaha,Camille Eché,Christophe Klopp,Cécile Grohs,Marine Milheset al. Data in Brief, 2025, 62, pp.112049. ⟨10.1016/j.dib.2025.112049⟩ Article dans une revue (data paper) hal-05268512v1
Comprehensive detection of structural variations in long and short reads dataset of French cattle Maulana Mughitz Naji,Christophe Klopp,Camille Eché,Arnaud Di Franco,Clément Birbeset al. Scientific Reports, 2025, 15 (1), pp.40758. ⟨10.1038/s41598-025-24477-8⟩ Article dans une revue hal-05391915v1
Application of a French cattle pangenome, from structural variant discovery to association studies on key phenotypes Valentin Sorin,Maulana Mughitz Naji,Clément Birbes,Cécile Grohs,Clémentine Escouflaireet al. Genetics Selection Evolution, 2025, 57, pp.61. ⟨10.1186/s12711-025-01012-x⟩ Article dans une revue hal-05330359v1
Pig and quail CpG methylation datasets from short and long read sequencing technologies Paul Terzian,Céline Vandecasteele,Joanna Lledo,Rémy-Félix Serre,Jules Sabbanet al. Scientific Data , 2025, 12 (1), pp.556. ⟨10.1038/s41597-025-04769-4⟩ Article dans une revue hal-05039144v1
Massive detection of cryptic recessive genetic defects in dairy cattle mining millions of life histories Florian Besnard,Ana Guintard,Cécile Grohs,Laurence Guzylack-Piriou,Margarita Canoet al. Genome Biology, 2024, 25 (1), pp.248. ⟨10.1186/s13059-024-03384-7⟩ Article dans une revue hal-04714371v1
Multi-genome comparisons reveal gain-and-loss evolution of anti-Mullerian hormone receptor type 2 as a candidate master sex-determining gene in Percidae Heiner Kuhl,Peter Euclide,Christophe Klopp,Cédric Cabau,Margot Zahmet al. BMC Biology, 2024, 22 (1), pp.141. ⟨10.1186/s12915-024-01935-9⟩ Article dans une revue hal-04638789v1
Detection of DNA methylation signatures through the lens of genomic imprinting Jean-Noël Hubert,Nathalie Iannuccelli,Cédric Cabau,Eva Jacomet,Yvon Billonet al. Scientific Reports, 2024, 14 (1), pp.1694. ⟨10.1038/s41598-024-52114-3⟩ Article dans une revue hal-04453257v1
Whole‐genome sequencing of SARS‐CoV‐2: Comparison of target capture and amplicon single molecule real‐time sequencing protocols Florence Nicot,Pauline Trémeaux,Justine Latour,Nicolas Jeanne,Noémie Rangeret al. Journal of Medical Virology, 2023, 95 (1), pp.e28123. ⟨10.1002/jmv.28123⟩ Article dans une revue hal-03988344v1
Suspicions of two bridgehead invasions of Xylella fastidiosa subsp. multiplex in France Enora Dupas,Karine Durand,Adrien Rieux,Martial Briand,Olivier Pruvostet al. Communications Biology, 2023, 6 (1), pp.103. ⟨10.1038/s42003-023-04499-6⟩ Article dans une revue hal-03975291v1
Early dispersal of domestic horses into the Great Plains and northern Rockies William Timothy Treal Taylor,Pablo Librado,Mila Hunska Tašunke Icu,Carlton Shield Chief Gover,Jimmy Arterberryet al. Science, 2023, 379 (6639), pp.1316-1323. ⟨10.1126/science.adc9691⟩ Article dans une revue hal-04065852v1
Large-scale detection and characterization of interchromosomal rearrangements in normozoospermic bulls using massive genotype and phenotype data sets Jeanlin Jourdain,Harmonie Barasc,Thomas Faraut,Anne Calgaro,Nathalie Bonnetet al. Genome Research, 2023, 33 (6), pp.957-971. ⟨10.1101/gr.277787.123⟩ Article dans une revue hal-04170739v1
Size Fractionation of Milliliter DNA Samples in Minutes Controlled by an Electric Field of ∼10 V Paul Bruand,Inga Tijunelyte,Adrien Castinel,Cécile Donnadieu,Pierre Josephet al. Analytical Chemistry, 2023, 95 (49), pp.18099-18106. ⟨10.1021/acs.analchem.3c03187⟩ Article dans une revue hal-04322873v1
The genomics of linkage drag in inbred lines of sunflower Kaichi Huang,Mojtaba Jahani,Jérôme Gouzy,Alexandra Legendre,Sébastien Carrereet al. Proceedings of the National Academy of Sciences of the United States of America, 2023, 120 (14), pp.e2205783119. ⟨10.1073/pnas.2205783119⟩ Article dans une revue hal-04198273v1
A Bos taurus sequencing methods benchmark for assembly, haplotyping, and variant calling Camille Eché,Carole Iampietro,Clément Birbes,Andreea Dréau,Claire Kuchlyet al. Scientific Data , 2023, 10 (1), pp.369. ⟨10.1038/s41597-023-02249-1⟩ Article dans une revue (data paper) hal-04122201v1
Genome structures resolve the early diversification of teleost fishes Elise Parey,Alexandra Louis,Jérôme Montfort,Olivier Bouchez,Céline Roqueset al. Science, 2023, 379 (6632), pp.572-575. ⟨10.1101/2022.04.07.487469⟩ Article dans une revue hal-03765882v1
Generation of a chromosome‐level genome assembly for Pacific halibut ( Hippoglossus stenolepis ) and characterization of its sex‐determining genomic region Andrew J. Jasonowicz,Anna Simeon,Margot Zahm,Cédric Cabau,Christophe Kloppet al. Molecular Ecology Resources, 2022, 22 (7), pp.2685-2700. ⟨10.1111/1755-0998.13641⟩ Article dans une revue hal-03737450v1
Transcriptional response to host chemical cues underpins the expansion of host range in a fungal plant pathogen lineage Stefan Kusch,Justine Larrouy,Heba Ibrahim,Shantala Mounichetty,Noémie Gassetet al. The International Society of Microbiologial Ecology Journal, 2022, 16 (1), pp.138-148. ⟨10.1038/s41396-021-01058-x⟩ Article dans une revue hal-03331958v1
The genomic history and global expansion of domestic donkeys Evelyn Todd,Laure Tonasso-Calvière,Loreleï Chauvey,Stéphanie Schiavinato,Antoine Fageset al. Science, 2022, 377 (6611), pp.1172-1180. ⟨10.1126/science.abo3503⟩ Article dans une revue hal-03827857v1
An ancient truncated duplication of the anti‐Müllerian hormone receptor type 2 gene is a potential conserved master sex determinant in the Pangasiidae catfish family Ming Wen,Qiaowei Pan,Elodie Jouanno,Jérôme Montfort,Margot Zahmet al. Molecular Ecology Resources, 2022, 22 (6), pp.2411-2428. ⟨10.1111/1755-0998.13620⟩ Article dans une revue hal-03652234v1
Prediction of SARS-CoV-2 Variant Lineages Using the S1-Encoding Region Sequence Obtained by PacBio Single-Molecule Real-Time Sequencing Sébastien Lhomme,Justine Latour,Nicolas Jeanne,Pauline Trémeaux,Noémie Rangeret al. Viruses, 2021, 13 (12), pp.2544. ⟨10.3390/v13122544⟩ Article dans une revue hal-03771640v1
Influence of SARS-CoV-2 Variant B.1.1.7, Vaccination, and Public Health Measures on the Spread of SARS-CoV-2 Chloé Dimeglio,Marine Milhes,Jean-Michel Loubes,Noémie Ranger,Jean-Michel Mansuyet al. Viruses, 2021, 13 (5), pp.898. ⟨10.3390/v13050898⟩ Article dans une revue hal-03739146v1
Analysis of Polycerate Mutants Reveals the Evolutionary Co-option of HOXD1 for Horn Patterning in Bovidae Aurélie Allais-Bonnet,Aurélie Hintermann,Marie-Christine Deloche,Raphael Cornette,Philippe Bardouet al. Molecular Biology and Evolution, 2021, ⟨10.1093/molbev/msab021⟩ Article dans une revue hal-03164832v1
Influence of age on the spread of SARS-CoV-2 variant B.1.1.7 Chloé Dimeglio,Florence Nicot,Marcel Miedougé,Jean-Loup Chappert,Cécile Donnadieuet al. Journal of Clinical Virology, 2021, 141, ⟨10.1016/j.jcv.2021.104872⟩ Article dans une revue hal-03739196v1
A supernumerary “B-sex” chromosome drives male sex determination in the Pachón cavefish, Astyanax mexicanus Boudjema Imarazene,Kang Du,Séverine Beille,Elodie Jouanno,Romain Feronet al. Current Biology, 2021, 31 (21), pp.4800-4809.e9. ⟨10.1016/j.cub.2021.08.030⟩ Article dans une revue hal-03337251v1
Characterization of a Y‐specific duplication/insertion of the anti‐Mullerian hormone type II receptor gene based on a chromosome‐scale genome assembly of yellow perch, Perca flavescens Romain Feron,Margot Zahm,Cédric Cabau,Christophe Klopp,Céline Roqueset al. Molecular Ecology Resources, 2020, 20 (2), pp.531-543. ⟨10.1111/1755-0998.13133⟩ Article dans une revue hal-02623895v1
A Chromosome-Scale Genome Assembly Resource for Myriosclerotinia sulcatula Infecting Sedge Grass ( Carex sp.) Stefan Kusch,Heba Ibrahim,Catherine Zanchetta,Celine Lopez-Roques,Cécile Donnadieuet al. Molecular Plant-Microbe Interactions, 2020, 33 (7), pp.880-883. ⟨10.1094/MPMI-03-20-0060-A⟩ Article dans une revue hal-02900377v1
Evidence for a duplicated mitochondrial region in Audubon’s shearwater based on MinION sequencing Lucas Torres,Andreanna Welch,Catherine Zanchetta,R. Terry Chesser,Maxime Mannoet al. Mitochondrial DNA Part A, 2019, 30 (2), pp.256-263. ⟨10.1080/24701394.2018.1484116⟩ Article dans une revue hal-01851856v1
The Genomic Basis of Color Pattern Polymorphism in the Harlequin Ladybird Mathieu Gautier,Junichi Yamaguchi,Julien Foucaud,Anne Loiseau,Aurélien Aussetet al. Current Biology, 2018, 28 (20), pp.1-7. ⟨10.1016/j.cub.2018.08.023⟩ Article dans une revue hal-01864435v1
Rapid whole-genome based typing and surveillance of avipoxviruses using nanopore sequencing. Guillaume Croville,Guillaume Le Loc'H,Catherine Zanchetta,Maxime Manno,Christelle Camus-Bouclainvilleet al. Journal of Virological Methods, 2018, 261, pp.34-39. ⟨10.1016/j.jviromet.2018.08.003⟩ Article dans une revue hal-02626516v1
Population genomics of picophytoplankton unveils novel chromosome hypervariability Romain Blanc-Mathieu,Marc Krasovec,Maxime Hebrard,Sheree Yau,Elodie Desgrangeset al. Science Advances , 2017, 3 (7), pp.e1700239. ⟨10.1126/sciadv.1700239⟩ Article dans une revue lirmm-01842137v1
The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution Hélène Badouin,Jerome Gouzy,Christopher Grassa,Florent Murat,S Evan Statonet al. Nature, 2017, 546 (7656), pp.148-152. ⟨10.1038/nature22380⟩ Article dans une revue hal-01603287v1
A panel of embryonic stem cell lines reveals the variety and dynamic of pluripotent states in rabbits Pierre Osteil,Anaïs Moulin,Claire Santamaria,Thierry Joly,Luc Jouneauet al. Stem Cell Reports, 2016, 7 (3), pp.383-398. ⟨10.1016/j.stemcr.2016.07.022⟩ Article dans une revue hal-02639328v1
Extraction of high-molecular-weight genomic DNA for long-read sequencing of single molecules Baptiste Mayjonade,Jerome Gouzy,Cécile Donnadieu,Nicolas Pouilly,William Marandeet al. Biotechniques, 2016, 61 (4), pp.203-205. ⟨10.2144/000114460⟩ Article dans une revue hal-01608743v1
Correction : Design and Characterization of a 52K SNP Chip for Goats Gwenola Tosser-Klopp,Philippe Bardou,Olivier Bouchez,Cédric Cabau,Richard Crooijmanset al. PLoS ONE, 2016, 11 (3), pp.Non Paginé. ⟨10.1371/journal.pone.0152632⟩ Article dans une revue hal-01602260v1
Reinforcement of STAT3 activity reprogrammes human embryonic stem cells to naive-like pluripotency Hongwei Chen,Irène Aksoy,Fabrice Gonnot,Pierre Osteil,Maxime Aubryet al. Nature Communications, 2015, 6 (1), pp.7095. ⟨10.1038/ncomms8095⟩ Article dans une revue hal-05602603v1
Reinforcement of STAT3 activity reprogrammes human embryonic stem cells to naive-like pluripotency Hongwei Chen,Irène Aksoy,Fabrice Gonnot,Pierre Osteil,Maxime Aubryet al. Nature Communications, 2015, 6 (1), ⟨10.1038/ncomms8095⟩ Article dans une revue hal-01997120v1
The characterization of novel tissue microbiota using an optimized 16S metagenomic sequencing pipeline Jérôme J. Lluch,Florence Servant,Sandrine Païssé,Carine Valle,Sophie Valiereet al. PLoS ONE, 2015, 10 (11), pp.1-22. ⟨10.1371/journal.pone.0142334⟩ Article dans une revue hal-02637487v1
Novel Avian Coronavirus and Fulminating Disease in Guinea Fowl, France Etienne Liais,Guillaume Croville,Jérôme J. Mariette,Maxence Delverdier,Marie-Noêlle Lucaset al. Emerging Infectious Diseases, 2014, 20 (1), pp.105-108. ⟨10.3201/eid2001.130774⟩ Article dans une revue hal-02638202v1
Development of SNP-genotyping arrays in two shellfish species S. Lapegue,E Harrang,S Heurtebise,E Flahauw,C Donnadieuet al. Molecular Ecology, 2014, 14 (4), pp.820-830. ⟨10.1111/1755-0998.12230⟩ Article dans une revue hal-01082464v1
A 3.7 Mb deletion encompassing ZEB2 causes a novel polled and multisystemic syndrome in the progeny of a somatic mosaic bull Aurelien Capitan,Aurélie Allais-Bonnet,Alain Pinton,Brigitte Marquant-Le Guienne,Daniel Le Bourhiset al. PLoS ONE, 2012, 7, online (11), Non paginé. ⟨10.1371/journal.pone.0049084⟩ Article dans une revue hal-01019835v1
Highly-multiplexed SNP genotyping for genetic mapping and germplasm diversity studies in pea Chrystel Deulvot,Hélène Charrel,Amandine Marty,Françoise Jacquin,Cecile Donnadieuet al. BMC Genomics, 2010, 11 (august), Non paginé. ⟨10.1186/1471-2164-11-468⟩ Article dans une revue hal-02665874v1

Communication dans un congrès (13)

Modelling genetic and epigenetic selection signatures from pool sequencing. Sonia E Eynard,Kossi-Julien Kowou,Cécile Donnadieu,Loïc Flatres-Grall,Carole Iampietroet al. Environmental and Agronomical Genomics Symposium, france génomique; greenomics, Feb 2026, Paris, France Communication dans un congrès hal-05538015v1
Construction and characterization of a comprehensive ovine pangenome from 11 breeds provides new insights into their genetic diversity Valentin Sorin,Julien Sarry,Clément Birbes,Carole Iampietro,Camille Echéet al. 75. Annual Meeting of the European Federation of Animal Science (EAAP 2024), Sep 2024, Florence (IT), Italy Communication dans un congrès hal-05288847v1
The construction of a cattle pangenome for 14 French dairy and beef breeds provides new insights into their genetic diversity. Valentin Sorin,Marie-Pierre Sanchez,Carole Iampietro,Camille Eché,Amandine Suinet al. 75. Annual Meeting of the European Federation of Animal Science (EAAP 2024), European Federation of Animal Science (EAAP), Sep 2024, Florence, Italy. pp.288 Communication dans un congrès hal-04694228v1
Genotyping a thousand animals using low coverage sequencing and imputation Cervin Guyomar,Denis Milan,Christophe Klopp,Cécile Donnadieu,Bertrand Servinet al. Genotoul biostat bioinfo day, Genotoul, Nov 2023, Toulouse, France Communication dans un congrès hal-04669286v1
Improvement of the Bos taurus Genome Assembly using New Sequencing Technologies Camille Eché,Carole Iampietro,Clement Birbes,Andreea Dreau,Claire Kuchlyet al. Discoveries Roadshow 2023 - PacBio, PacBio, May 2023, Paris, France Communication dans un congrès hal-04096124v1
Targeting the pig imprintome Jean-Noël Hubert,Nathalie Iannuccelli,Cédric Cabau,Rémy-Félix Serre,Céline Vandecasteeleet al. Advances in Genome Biology and Technology Agriculture (AGBT-Ag), Apr 2022, San Diego, United States Communication dans un congrès hal-04099166v1
metagWGS : a workflow to analyse short or long HiFi metagenomic reads Joanna Fourquet,Maïna Vienne,Jean Mainguy,Vincent Darbot,Pierre Martinet al. Bioinfo Biosta Genotoul day, Dec 2022, Castanet-Tolosan, France Communication dans un congrès hal-03944382v1
The benefits of long read HiFi sequencing for metabarcoding analysis Adrien Castinel,Jean Mainguy,Sylvie Combes,Carole Iampietro,Christine Gaspinet al. PACBIO DISCOVERIES ROADSHOW PARIS, PACBIO, May 2022, Paris, France Communication dans un congrès hal-03740586v1
Transgenerational epigenetics in quail Chloé Cerutti,Sophie Leroux,Paul Terzian,Joanna Lledo,David Gourichonet al. Genotoul Biostat Bioinfo Day, Dec 2022, Castanet-Tolosan, France Communication dans un congrès hal-03957296v1
The benefits of long read HiFi sequencing for metagenomic analysis Adrien Castinel,Jean Mainguy,Sylvie Combes,Carole Iampietro,Christine Gaspinet al. France génomique - VIIème Animation Wetlab et Bioinfo, Nov 2022, Strasbourg, France Communication dans un congrès hal-03896074v1
In search of the honey bee centromeres: regions with tandem repeats high at content and low recombination rates Alain Vignal,Sonia E Eynard,Christophe Klopp,Bertrand Servin,Kamila Canale-Tabetet al. 9th European Congress of Apidology, Sep 2022, Belgrade, Serbia Communication dans un congrès hal-03855207v1
De novo genome assembly of a western European Apis mellifera mellifera black bee Alain Vignal,Sonia E Eynard,Christophe Klopp,Kamila Canale Tabet,William Marandeet al. Apimondia, Sep 2019, Montréal, Canada Communication dans un congrès hal-04796454v1
Détection moléculaire et caractérisation de virus respiratoires du canard par une approche de séquençage à haut débit Etienne Liais,Guillaume Croville,Jérôme J. Mariette,Christophe Klopp,Cécile Donnadieuet al. Journée SEVAB, Nov 2012, Toulouse, France Communication dans un congrès hal-01191337v1

Poster de conférence (25)

Genetic and epigenetic selection signatures from pool sequencing expeiment Sonia E Eynard,Kossi-Julien Kowou,Cécile Donnadieu,Loïc Flatres-Grall,Carole Iampietroet al. Epigenetic inheritance symposium, Aug 2025, Zurich, Switzerland Poster de conférence hal-05208140v1
Genetic and epigenetic selection signatures from pool sequencing experiment Sonia E Eynard,Kossi-Julien Kowou,Cécile Donnadieu,Loïc Flatres-Grall,Carole Iampietroet al. Biology of genomes, May 2025, Cold Spring Harbor (NY), United States Poster de conférence hal-05117238v1
Evaluating low-pass genotyping strategies using PARSEC, a scalable and modular Nextflow pipeline Cervin Guyomar,Denis Milan,Christophe Klopp,Cécile Donnadieu,Bertrand Servinet al. Intelligent Systems for Molecular Biology/European Conference on Computational Biology, Jul 2025, Liverpool, United Kingdom Poster de conférence hal-05163312v1
Modelling genetic and epigenetic selection signatures from pool sequencing Sonia E Eynard,Kossi-Julien Kowou,Cécile Donnadieu,Loïc Flatres-Grall,Carole Iampietroet al. Epiphase, Nov 2025, Toulouse, France Poster de conférence hal-05538035v1
Outil d'épi-génotypage haut-débit par capture ciblée Nathalie Iannuccelli,Sophie Valière,Julien Sarry,Cécile Donnadieu,Julie Demars Colloque INRAE Genomics, Jun 2025, Clermont-Ferrand, France. ⟨10.15454/1.5572370921303193E12⟩ Poster de conférence hal-05421501v1
Whole genome sequencing and epigenotyping for multiple generations of selection using Oxford Nanopore Technology Sonia E Eynard,Cécile Donnadieu,Loïc Flatres-Grall,Carole Iampietro,Sandrine Lagarrigueet al. International congress in Ecology and Evolution, Oct 2024, Lyon, France Poster de conférence hal-04796434v1
Transgenerational epigenetics in quail: targeting DNA methylation patterns to address the interplay between genetic and epigenetic mechanisms Stacy Rousse,Chloé Cerutti,Sophie Leroux,Paul Terzian,Joanna Lledoet al. Ecology and Evolution, Oct 2024, Lyon, France Poster de conférence hal-04770637v1
Targeting the pig imprintome with EM-seq Jean-Noël Hubert,Nathalie Iannuccelli,Mathilde Perret,Cédric Cabau,Eva Jacometet al. 2024 Environnemental and Agronomical Genomics Symposium, Feb 2024, Toulouse, France. Poster de conférence hal-04668372v1
Whole genome sequencing and epigenotyping for multiple generations of selection using Oxford Nanopore Technology Sonia E Eynard,Cécile Donnadieu,Loïc Flatres-Grall,Carole Iampietro,Sandrine Lagarrigueet al. Environmental and Agronomical Genomics Symposium, Feb 2024, Toulouse, France. , pp.118, Book of abstracts Poster de conférence hal-04473354v1
Benchmarking of sequencing technologies for CpG methylation detection: applications to quail and pig Céline Vandecasteele,Paul Terzian,Joanna Lledo,Rémy-Félix Serre,Jules Sabbanet al. London Calling 2024, May 2024, Londres, United Kingdom Poster de conférence hal-04638952v1
A Bos taurus sequencing methods benchmark for assembly, haplotyping, and variant calling Camille Eché,Carole Iampietro,Clément Birbes,Andreea Dréau,Claire Kuchlyet al. Plant and Genome San Diego 2024, Jan 2024, San Diego, United States. 10, 2024 Poster de conférence hal-04432803v1
Major contribution to the bovine pangenome: whole genome sequences, SNPs, and structural variants of 154 bulls from 14 breeds Amandine Suin,Camille Marcuzzo,Camille Eché,Andreea Dréau,Clément Birbeset al. Plant and Genome San Diego 2024, Jan 2024, San Diego, United States Poster de conférence hal-04432840v1
Search for new mutations in cattle by systemac whole genome resequencing Mekki Boussaha,Camille Eché,Clémentine Escouflaire,Cécile Grohs,Carole Iampietroet al. 39th International Society of Animal Genetics Conference, Jul 2023, Cape Town, South Africa Poster de conférence hal-04170956v1
L’évolution de l’épigénétique au cours de plusieurs générations de sélection Sonia E Eynard,Cécile Donnadieu,Loïc Flatres-Grall,Carole Iampietro,Sandrine Lagarrigueet al. EpiPhase, Oct 2023, Jouy en Josas, France Poster de conférence hal-04796446v1
Transgenerational epigenetics in quail: whole genome DNA methylation analysis Chloé Cerutti,Sophie Leroux,Paul Terzian,Joanna Lledo,David Gourichonet al. Epigenetic Inheritance: Impact for Biology and Society, Aug 2023, Zurich, Switzerland Poster de conférence hal-04212971v1
Structural variants detection and de novo genome assembly of a maize line Carole Iampietro,Camille Eché,Clément Birbes,Arnaud Di Franco,Andreea Dréauet al. Plant & Animal Genome Conference (PAG) 2022, Jan 2022, San Diego, United States Poster de conférence hal-03541379v1
metagWGS: a workflow to analyse short and long HiFi metagenomic reads Joanna Fourquet,Maïna Vienne,Jean Mainguy,Vincent Darbot,Pierre Martinet al. ECCB2022, Sep 2022, Sitges, Spain Poster de conférence hal-03788263v1
Transgenerational epigenetics in quail Chloé Cerutti,Sophie Leroux,Paul Terzian,Joanna Lledo,David Gourichonet al. ECCB2022 - 21st European Conference on Computational Biology, Sep 2022, Sitges, Spain Poster de conférence hal-03935584v1
Implementation of new methods for metagenomics analysis using PacBio HiFi sequencing Adrien Castinel,Jean Mainguy,Sylvie Combes,Carole Iampietro,Christine Gaspinet al. Plant & Animal Genome Conference (PAG) 2022, Jan 2022, San Diego, United States Poster de conférence hal-03541346v1
Preliminary results from Nanopore Q20+ sequencing Claire Kuchly,Jules Sabban,Eden Darnige,Camille Eché,Amandine Suinet al. JOBIM 2022 : Journées Ouvertes Biologie Informatique Mathématiques, Jul 2022, Rennes, France. 2022 Poster de conférence hal-03719401v1
Vers une carte de l'imprintome porcin Jean-Noël Hubert,Nathalie Iannuccelli,Cédric Cabau,Rémy-Félix Serre,Céline Vandecasteeleet al. Journées Scientifiques du Département de Génétique Animale, Sep 2022, Bordeaux, France Poster de conférence hal-04099355v1
De novo assembly of 90 bovines genomes using PacBio CLR application comparison and optimization Camille Marcuzzo,Amandine Suin,Camille Eché,Andreea Dreau,Clément Birbeset al. Assemblée générale France Génomique, Jun 2022, Paris, France Poster de conférence hal-04590746v1
Strengths and limits of long read metabarcoding Jean Mainguy,Adrien Castinel,Olivier Bouchez,Sylvie Combes,Carole Iampietroet al. ECCB 2022, Sep 2022, Meliá Sitges, Spain Poster de conférence hal-03848228v1
De novo assembly of bovine genome using PacBio applications Camille Eché,Clément Birbes,Carole Iampietro,Andreea Dréau,Claire Kuchlyet al. SMRT Leiden 2021 – Young Investigator Virtual Conference, May 2021, virtuel, Netherlands Poster de conférence hal-03541224v1
Improving microbial taxonomic profiling with long read technologies Jean Mainguy,Adrien Castinel,Olivier Bouchez,Sylvie Combes,Carole Iampietroet al. JOBIM2020, Jun 2020, Online, France Poster de conférence hal-03177058v1