Cédric Cabau IR bioinformatique à INRAE

Identifiants chercheurs

IdHAL :

cedric-cabau

ORCID :

0000-0001-8560-4003

IdRef :

236613405

Publications

Article dans une revue (50)

Searching for shared epigenetic clocks: evaluating ultra-conserved markers in a de novo genome assembly of the albacore tuna Thomas Chevrier,Sylvain Bonhommeau,Michael Thompson,Jessica Farley,Giorgia del Vecchioet al. GeroScience, 2026, ⟨10.1007/s11357-026-02192-0⟩ Article dans une revue hal-05578780v1
A single-cell atlas of transcriptome changes in the intestinal epithelium at the suckling-to-weaning transition in male rabbits Tania Malonga,Christelle Knudsen,Julie Alberge,Emeline Lhuillier,Patrick Aymardet al. Cellular and Molecular Gastroenterology and Hepatology, 2026, 20 (1), pp.101628. ⟨10.1016/j.jcmgh.2025.101628⟩ Article dans une revue hal-05528807v1
Spatio-temporal diversity and genetic architecture of pyrantel resistance in Cylicocyclus nassatus, the most abundant horse parasite Guillaume Sallé,Élise Courtot,Cédric Cabau,Hugues Parrinello,Delphine Serreauet al. Peer Community Journal, 2025, 5, pp.e69. ⟨10.24072/pcjournal.571⟩ Article dans une revue hal-05197483v1
Detection of DNA methylation signatures through the lens of genomic imprinting Jean-Noël Hubert,Nathalie Iannuccelli,Cédric Cabau,Eva Jacomet,Yvon Billonet al. Scientific Reports, 2024, 14 (1), pp.1694. ⟨10.1038/s41598-024-52114-3⟩ Article dans une revue hal-04453257v1
Symbiosis, hybridization and speciation in Mediterranean octocorals (Octocorallia, Eunicellidae) Didier Aurelle,Anne Haguenauer,Marc Bally,Frédéric Zuberer,Dorian Guillemainet al. Biological Journal of the Linnean Society, 2024, 143 (4), ⟨10.1093/biolinnean/blae116⟩ Article dans une revue hal-04859569v1
On the specific status of eastern Mediterranean Dendrophyllia corals (Cnidaria, Anthozoa): Genetic characterization and speciation scenarios Didier Aurelle,Anne Haguenauer,Chloé Blaise,Lauric Reynes,Sophie Arnaud-Haondet al. Zoologica Scripta, 2024, 53 (2), pp.235-247. ⟨10.1111/zsc.12643⟩ Article dans une revue hal-04354995v1
Multi-genome comparisons reveal gain-and-loss evolution of anti-Mullerian hormone receptor type 2 as a candidate master sex-determining gene in Percidae Heiner Kuhl,Peter Euclide,Christophe Klopp,Cédric Cabau,Margot Zahmet al. BMC Biology, 2024, 22 (1), pp.141. ⟨10.1186/s12915-024-01935-9⟩ Article dans une revue hal-04638789v1
Genome structures resolve the early diversification of teleost fishes Elise Parey,Alexandra Louis,Jérôme Montfort,Olivier Bouchez,Céline Roqueset al. Science, 2023, 379 (6632), pp.572-575. ⟨10.1101/2022.04.07.487469⟩ Article dans une revue hal-03765882v1
Generation of a chromosome‐level genome assembly for Pacific halibut ( Hippoglossus stenolepis ) and characterization of its sex‐determining genomic region Andrew J. Jasonowicz,Anna Simeon,Margot Zahm,Cédric Cabau,Christophe Kloppet al. Molecular Ecology Resources, 2022, 22 (7), pp.2685-2700. ⟨10.1111/1755-0998.13641⟩ Article dans une revue hal-03737450v1
Rabbit targeted genomic sequences after heterologous hybridization using human exome Nathalie Iannuccelli,Julien Sarry,Yvon Billon,Patrick Aymard,Virginie Helieset al. BMC Research Notes, 2022, 15 (1), 3 p. ⟨10.1186/s13104-022-06162-5⟩ Article dans une revue hal-03770192v1
An ancient truncated duplication of the anti‐Müllerian hormone receptor type 2 gene is a potential conserved master sex determinant in the Pangasiidae catfish family Ming Wen,Qiaowei Pan,Elodie Jouanno,Jérôme Montfort,Margot Zahmet al. Molecular Ecology Resources, 2022, 22 (6), pp.2411-2428. ⟨10.1111/1755-0998.13620⟩ Article dans une revue hal-03652234v1
A supernumerary “B-sex” chromosome drives male sex determination in the Pachón cavefish, Astyanax mexicanus Boudjema Imarazene,Kang Du,Séverine Beille,Elodie Jouanno,Romain Feronet al. Current Biology, 2021, 31 (21), pp.4800-4809.e9. ⟨10.1016/j.cub.2021.08.030⟩ Article dans une revue hal-03337251v1
Transcriptome Profiling of the Pacific Oyster Crassostrea gigas Visceral Ganglia over a Reproduction Cycle Identifies Novel Regulatory Peptides Emilie Réalis-Doyelle,Julie Schwartz,Cédric Cabau,Lorane Le Franc,Benoit Bernayet al. Marine drugs, 2021, 19 (8), pp.452. ⟨10.3390/md19080452⟩ Article dans une revue hal-03330324v1
A duplicated copy of id2b is an unusual sex-determining candidate gene on the Y chromosome of arapaima (Arapaima gigas) Mateus Adolfi,Kang Du,Susanne Kneitz,Cédric Cabau,Margot Zahmet al. Scientific Reports, 2021, 11 (1), pp.21544. ⟨10.1038/s41598-021-01066-z⟩ Article dans une revue hal-03521507v1
Contrasting gene decay in subterranean vertebrates: insights from cavefishes and fossorial mammals Maxime Policarpo,Julien Fumey,Philippe Lafargeas,Delphine Naquin,Claude Thermeset al. Molecular Biology and Evolution, 2021, 38 (2), pp.589-605. ⟨10.1093/molbev/msaa249⟩ Article dans une revue hal-02968373v1
Genome sequence of the euryhaline Javafish Medaka, Oryzias javanicus: A small aquarium fish model for studies on adaptation to salinity Yusuke Takehana,Margot Zahm,Cédric Cabau,Christophe Klopp,Céline Roqueset al. G3, 2020, 10 (3), pp.907-915. ⟨10.1534/g3.119.400725⟩ Article dans une revue hal-02624885v1
The sterlet sturgeon genome sequence and the mechanisms of segmental rediploidization Kang Du,Matthias Stöck,Susanne Kneitz,Christophe Klopp,Joost Wolteringet al. Nature Ecology & Evolution, 2020, 4 (6), pp.841-852. ⟨10.1038/s41559-020-1166-x⟩ Article dans une revue hal-02640938v1
Synteny-Guided Resolution of Gene Trees Clarifies the Functional Impact of Whole-Genome Duplications Elise Parey,Alexandra Louis,Cédric Cabau,Yann Guiguen,Hugues Roest Crolliuset al. Molecular Biology and Evolution, 2020, 37 (11), pp.3324 - 3337. ⟨10.1093/molbev/msaa149⟩ Article dans une revue hal-03457579v1
Multi-tissue Siberian sturgeon RNA sequencing data Christophe Klopp,Cédric Cabau,André Lasalle,Santiago Di Landro,Gonzalo Greifet al. Data in Brief, 2020, 31, ⟨10.1016/j.dib.2020.105820⟩ Article dans une revue (data paper) hal-03157670v1
Sex chromosome and sex locus characterization in goldfish, Carassius auratus (Linnaeus, 1758) Ming Wen,Romain Feron,Qiaowei Pan,Justine Guguin,Elodie Jouannoet al. BMC Genomics, 2020, 21 (1), pp.1-12. ⟨10.1186/s12864-020-06959-3⟩ Article dans une revue hal-02937875v1
Characterization of a Y‐specific duplication/insertion of the anti‐Mullerian hormone type II receptor gene based on a chromosome‐scale genome assembly of yellow perch, Perca flavescens Romain Feron,Margot Zahm,Cédric Cabau,Christophe Klopp,Céline Roqueset al. Molecular Ecology Resources, 2020, 20 (2), pp.531-543. ⟨10.1111/1755-0998.13133⟩ Article dans une revue hal-02623895v1
Siberian sturgeon multi-tissue reference transcriptome database Christophe Klopp,Cédric Cabau,Gonzalo Greif,André Lasalle,Santiago Di Landroet al. Database - The journal of Biological Databases and Curation, 2020, 2020, pp.1-8. ⟨10.1093/database/baaa082⟩ Article dans une revue (article de synthèse) hal-03157672v1
Multi-species annotation of transcriptome and chromatin structure in domesticated animals Sylvain Foissac,Sarah Djebali,Kylie Munyard,Nathalie Vialaneix,Andrea Rauet al. BMC Biology, 2019, 17 (1), 25 p. ⟨10.1186/s12915-019-0726-5⟩ Article dans une revue hal-02437599v1
Functional genomics of the digestive tract in broilers Amélie Juanchich,Christelle Hennequet-Antier,Cédric Cabau,Elisabeth Le Bihan-Duval,Michel Jacques M.J. Ducloset al. BMC Genomics, 2018, 19 (1), ⟨10.1186/s12864-018-5344-z⟩ Article dans une revue hal-02623299v1
Compacting and correcting Trinity and Oases RNA-Seq de novo assemblies Cédric Cabau,Frédéric Escudie,Anis Djari,Yann Guiguen,Julien Bobeet al. PeerJ, 2017, 5, pp.e2988. ⟨10.7717/peerj.2988⟩ Article dans une revue hal-01506620v1
Evolution of gene expression after whole-genome duplication: New insights from the spotted gar genome Jérémy Pasquier,Ingo Braasch,Peter Batzel,Cédric Cabau,Jérôme Montfortet al. Journal of Experimental Zoology Part B: Molecular and Developmental Evolution, 2017, 328 (7), pp.709 - 721. ⟨10.1002/jez.b.22770⟩ Article dans une revue hal-01788671v1
Correction : Design and Characterization of a 52K SNP Chip for Goats Gwenola Tosser-Klopp,Philippe Bardou,Olivier Bouchez,Cédric Cabau,Richard Crooijmanset al. PLoS ONE, 2016, 11 (3), pp.Non Paginé. ⟨10.1371/journal.pone.0152632⟩ Article dans une revue hal-01602260v1
Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Jérémy Pasquier,Cédric Cabau,Thuy Thao Vi Nguyen,Elodie Jouanno,Dany Severacet al. BMC Genomics, 2016, 17 (1), pp.368. ⟨10.1186/s12864-016-2709-z⟩ Article dans une revue hal-01487023v1
The BioMart community portal: an innovative alternative to large, centralized data repositories Damian Smedley,Syed Haider,Steffen Durinck,Luca Pandini,Paolo Proveroet al. Nucleic Acids Research, 2015, 43 (W1), pp.W589-W598. ⟨10.1093/nar/gkv350⟩ Article dans une revue hal-01146849v1
The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates. Camille Berthelot,Frédéric Brunet,Domitille Chalopin,Amélie Juanchich,Maria Bernardet al. Nature Communications, 2014, 5, pp.1-10. ⟨10.1038/ncomms4657⟩ Article dans une revue hal-01193812v1
High-throughput sequencing analyses of XX genital ridges lacking [i]FOXL2[/i] reveal [i]DMRT1[/i] up-regulation before [i]SOX9[/i] expression during the sex-reversal process in goats Maeva El Zaiat,Luc Jouneau,Dominique Thepot Thépot,Christophe Klopp,Aurélie Allais-Bonnetet al. Biology of Reproduction, 2014, 91 (6), pp.1-14. ⟨10.1095/biolreprod.114.122796⟩ Article dans une revue hal-01194038v1
RNAbrowse: RNA-Seq de novo assembly results browser. Jérôme J. Mariette,Céline Noirot,Ibouniyamine Nabihoudine,Philippe Bardou,Claire Hoedeet al. PLoS ONE, 2014, 9 (5), 7 p. ⟨10.1371/journal.pone.0096821⟩ Article dans une revue hal-02636622v1
Design and characterization of a 52K SNP chip for goats Gwenola Tosser-Klopp,Philippe Bardou,Olivier Bouchez,Cédric Cabau,Richard Crooijmanset al. PLoS ONE, 2014, 9, online (1), Non paginé. ⟨10.1371/journal.pone.0086227⟩ Article dans une revue hal-01019568v1
Induced pluripotent stem cells derived from rabbits exhibit some characteristics of naïve pluripotency Pierre P. Osteil,Yann Y. Tapponnier,Suzy S. Markossian,Murielle Godet,Barbara B. Panneauet al. Biology Open, 2013, 2 (6), pp.613-628. ⟨10.1242/bio.20134242⟩ Article dans une revue hal-01000957v1
An overview of gene expression dynamics during early ovarian folliculogenesis: specificity of follicular compartments and bi-directional dialog Agnès Bonnet,Cédric Cabau,Olivier Bouchez,Julien Sarry,Nathalie Marsaudet al. BMC Genomics, 2013, 14 (december), pp.1-19. ⟨10.1186/1471-2164-14-904⟩ Article dans une revue hal-01019557v1
An immune-related gene evolved into the master sex-determining gene in Rainbow-trout, Oncorhynchus mykiss Ayaka Yano,René R. Guyomard,Barbara B. Nicol,Elodie Jouanno,Edwige Quilletet al. Current Biology, 2012, 22 (15), pp.1423-1428. ⟨10.1016/j.cub.2012.05.045⟩ Article dans une revue hal-01000319v1
Transcriptomic profiling of proteases and antiproteases in the liver of sexually mature hens in relation to vitellogenesis Marie-Christine Bourin,Joël Gautron,Magali Berges,Christelle Hennequet-Antier,Cédric Cabauet al. BMC Genomics, 2012, 13, 14 p. ⟨10.1186/1471-2164-13-457⟩ Article dans une revue hal-02644010v1
Fine mapping of complex traits in non-model species: using next generation sequencing and advanced intercross lines in Japanese quail Laure Fresard,Sophie Leroux,Patrice Dehais,Bertrand Servin,Hélène Gilbertet al. BMC Genomics, 2012, 13, online (october), Non paginé. ⟨10.1186/1471-2164-13-551⟩ Article dans une revue hal-01129669v1
Insulin immuno-neutralization in fed chickens: effects on liver and mucle transcriptome Jean Simon,Dragan Milenkovic,Estelle Godet,Cédric Cabau,Anne Collinet al. Physiological Genomics, 2012, 44 (5), pp.283-292. ⟨10.1152/physiolgenomics.00057.2011⟩ Article dans une revue hal-01129580v1
Development and characterisation of an expressed sequence tags (EST)-derived single nucleotide polymorphisms (SNPs) resource in rainbow trout Mekki Boussaha,René R. Guyomard,Cédric Cabau,Diane D. Esquerre,Edwige Quillet BMC Genomics, 2012, 13, online (june), Non paginé. ⟨10.1186/1471-2164-13-238⟩ Article dans une revue hal-01000332v1
Kinetics of gene expression and signaling in bovine cumulus cells throughout IVM in different mediums in relation to oocyte developmental competence, cumulus apoptosis and progesterone secretion Mohamad Salhab,Lucie Tosca,Cédric Cabau,Pascal Papillier,Christine Perreauet al. Theriogenology, 2011, 75 (1), pp.90-104. ⟨10.1016/j.theriogenology.2010.07.014⟩ Article dans une revue istex hal-01129418v1
PhyleasProg: a user-oriented web server for wide evolutionary analyses Joël Busset,Cédric Cabau,Camille Meslin,Géraldine Pascal Nucleic Acids Research, 2011, 39 (Web Server issue), pp.W479-W485. ⟨10.1093/nar/gkr243⟩ Article dans une revue hal-01129520v1
Strengthening insights into host responses to mastitis infection in ruminants by combining heterogeneous microarray data sources Sem Genini,Bouabid Badaoui,Gert Sclep,Stephen Bishop,Dave Waddingtonet al. BMC Genomics, 2011, 12 (1), pp.225. ⟨10.1186/1471-2164-12-225⟩ Article dans une revue inserm-00601542v1
Gene expression profiling to identify eggshell proteins involved in physical defense of the chicken egg Vincent Jonchère,Sophie Réhault-Godbert,Christelle Hennequet-Antier,Cédric Cabau,Vonick Sibutet al. BMC Genomics, 2010, 11 (57), 19 p. ⟨10.1186/1471-2164-11-57⟩ Article dans une revue hal-02662318v1
Revealing the dynamics of gene expression during embryonic genome activation and first differentiation in the rabbit embryo with a dedicated array screening Roger Léandri,Catherine Archilla,Linh Chi Bui,Nathalie N. Peynot,Zichuan Liuet al. Physiological Genomics, 2009, 36 (2), pp.98-113. ⟨10.1152/physiolgenomics.90310.2008⟩ Article dans une revue hal-02658579v1
Identification of transcripts involved in meiosis and follicle formation during ovine ovary development Adrienne Baillet,Béatrice Mandon-Pepin,Cédric Cabau,Elodie Poumerol,Eric Pailhouxet al. BMC Genomics, 2008, 9 (436), 12p. ⟨10.1186/1471-2164-9-436⟩ Article dans une revue hal-02658492v1
Molecular evidence for a critical period in mural trophoblast development in bovine blastocysts Severine S. Degrelle,Evelyne E. Campion,Cédric Cabau,François Piumi,Pierrette P. Reinaudet al. Developmental Biology, 2005, 288 (2), pp.448-460. ⟨10.1016/j.ydbio.2005.09.043⟩ Article dans une revue inserm-02440263v1
In the QTL region surrounding porcine MHC, gene order is conserved with human genome Carine Genet,Christine Renard,Cédric Cabau,Claire Rogel Gaillard,Joël Gellinet al. Mammalian Genome, 2001, 12, pp.246-249 Article dans une revue hal-02673114v1
IMpRH server: an RH mapping server available on the Web Denis Milan,R. Hawken,Cédric Cabau,Sophie S. Leroux,Carine Genetet al. Bioinformatics, 2000, 16 (6), pp.558-559 Article dans une revue hal-02686305v1
Exemple d'approche fonctionnelle : la fonction ovarienne dans l'espèce porcine Gwenola Tosser-Klopp,C. Clouscard-Martinato,Francis Benne,Agnès Bonnet,Cédric Cabauet al. Productions Animales, 2000, HS 2000, pp.165-167 Article dans une revue hal-02687687v1

Poster de conférence (21)

Targeting the pig imprintome with EM-seq Jean-Noël Hubert,Nathalie Iannuccelli,Mathilde Perret,Cédric Cabau,Eva Jacometet al. 2024 Environnemental and Agronomical Genomics Symposium, Feb 2024, Toulouse, France. Poster de conférence hal-04668372v1
Single cell transcriptomics reveal that initiation of solid food intake triggers the maturation of caecal lamina propria immune cells in suckling rabbits Christelle Knudsen,Tania Malonga,Mathilde Rumeau,Emeline Lhuillier,Cédric Cabauet al. International Congress of Mucosal Immunology (ICMI), Jul 2024, Copenhague, Denmark Poster de conférence hal-04827627v1
A methyl-seq tool to capture genomic imprinted loci Jean-Noël Hubert,Nathalie Iannuccelli,Cédric Cabau,Eva Jacomet,Yvon Billonet al. Genomic Imprinting - from Biology to Disease, Mar 2023, Hinxton, United Kingdom Poster de conférence hal-04198129v1
A bioinformatics pipeline to detect imprinting from methyl-seq trio data Jean-Noël Hubert,Mathilde Perret,Nathalie Iannuccelli,Eva Jacomet,Cédric Cabauet al. Genomic Imprinting - from Biology to Disease, Mar 2023, Hinxton, United Kingdom Poster de conférence hal-04198079v1
Le séquençage de l'ARNm en cellules uniques (scRNA-seq): un outil pour étudier la diversité des cellules CD45+ de la lamina propria du cæcum du lapin Christelle Knudsen,Frédéric Martins,Cédric Cabau,Alexia Zakaroff-Girard,Elodie Riantet al. Symposium du club d'immunologie et de vaccinologie vétérinaires, May 2023, Toulouse, France Poster de conférence hal-04827525v1
Single cell RNA-sequencing: a tool to study the diversity of the lamina propria CD45+ cells in the rabbit caecum Christelle Knudsen,Frédéric Martins,Cédric Cabau,Alexia Zakaroff-Girard,Elodie Riantet al. 20th International Congress of Mucosal Immunology (ICMI2022), Jul 2022, Seattle, United States Poster de conférence hal-04054303v1
Vers une carte de l'imprintome porcin Jean-Noël Hubert,Nathalie Iannuccelli,Cédric Cabau,Rémy-Félix Serre,Céline Vandecasteeleet al. Journées Scientifiques du Département de Génétique Animale, Sep 2022, Bordeaux, France Poster de conférence hal-04099355v1
Relationship between feed efficiency and functionality of the digestive tract in broilers : a transcriptomic analysis Amélie Juanchich,Christelle Hennequet-Antier,Cédric Cabau,Elisabeth Duval,Michel Jacques M.J. Ducloset al. European Symposium on Poultry Nutrition, Jun 2019, Gdansk, Poland. 2019 Poster de conférence hal-02788677v1
Integrative analyses of chromosome conformation, chromatin accessibility and gene expression in human and livestock genomes Camille Mestre,Sarah Djebali Quelen,Thomas Faraut,Nathalie Vialaneix,Andrea Rauet al. European Conference on Computational Biology (ECCB 2018), Sep 2018, Athènes, Greece. , 2018 Poster de conférence hal-02784857v1
Integrative and differential analysis of transcriptomes and chromatin accessibility regions reveals regulatory mechanisms involved in pig immune and metabolic functions Sarah Djebali Quelen,Kylie Munyard,Nathalie Villa-Vialaneix,Cédric Cabau,Andrea Rauet al. 36th International Society for Animal Genetics Conference, Jul 2017, Dublin, Ireland. 2017, ISAG 2017 - Genomes to Phenomes - Abstract Book Poster de conférence hal-01603033v1
Long-non coding RNAs repertoires in liver and two T lymphocyte cell types in four livestock species Kévin Muret,Sarah Djebali Quelen,Thomas Derrien,Cédric Cabau,Christophe Kloppet al. 36. Conference of the International Society for Animal Genetics (ISAG), Jul 2017, Dublin, Ireland. 2017, ISAG 2017 - Genomes to Phenomes - Abstract Book Poster de conférence hal-01621915v1
Profiling the landscape of transcription, chromatin accessibility and chromosome conformation of cattle, pig, chicken and goat genomes [FAANG pilot project] Sylvain Foissac,Sarah Djebali Quelen,Hervé Acloque,Philippe Bardou,Fany Blancet al. 36th International Society for Animal Genetics Conference, Jul 2017, Dublin, Ireland. 2017, ISAG 2017 - Genomes to Phenomes - Abstract Book Poster de conférence hal-01608449v1
Functional genomics of the digestive function in broilers Amélie Juanchich,Christelle Hennequet-Antier,Cédric Cabau,Elisabeth Duval,Michel Jacques M.J. Ducloset al. 10th European Symposium on Poultry Genetics, Jun 2017, Saint-Malo, France. 2017, Proceedings of the 10th european Symposoium on Poultry Genetics Poster de conférence hal-01606214v1
Early response of epithelial cells to&lt;em&gt; Eimeria tenella&lt;/em&gt; infection Françoise Bussière,Yan Jaszczyszyn,Cédric Cabau,Christelle Hennequet,Alisson Niepceronet al. 11. International Coccidiosis Conference, Sep 2014, Dresden, Germany. 2014 Poster de conférence hal-02739154v1
The PhyloFish project: an RNA-Seq approach coupled to high throughput phylogenomic analyses to study whole genome duplication impact on teleosts Jérémy Pasquier,Cédric Cabau,P. Gouret,L. Journot,Christophe Kloppet al. 17. Evolutionary Biology Meeting at Marseilles, Sep 2013, Marseille, France. 2013, 17th Evolutionary Biology Meeting at Marseilles Poster de conférence hal-02745585v1
Réponse précoce de l'hôte à l'infection par &lt;em&gt;Eimeria tenella&lt;/em&gt; Françoise Bussière,Yan Jaszczyszyn,Cédric Cabau,Christelle Hennequet,Patricia Berthonet al. Journées d'Animation Scientifique du Département Santé Animale, Oct 2013, Cap d'Agde, France. 2013, Santé animale et santé publique Poster de conférence hal-02748207v1
Early response of epithelial cells to Eimeria tenella infection Françoise I. Bussière,Yan Jaszczyszyn,Cédric Cabau,Christelle Hennequet-Antier,Fabien Brossier ApiCOWplexa 2012 International Meeting on Apicomplexan Parasites in Farm Animals, Oct 2012, Lisbonne, Portugal. Sociedade Portuguesa de Ciências Veterinárias, 176 p., 2012, Proceedings Apicomplexa in farm animals Poster de conférence hal-01416827v1
Characterization of a conserved master sex-determining gene in salmonids Yann Guiguen,Ayaka Yano,Barbara Nicol,Elodie Jouanno,René Guyomardet al. 1. International Conference on Integrative Salmonid Biology ICISB, Jun 2012, Oslo, Norway. 2012, ICISB 2012 Poster de conférence hal-01267802v1
Identification of genes expressed during sheep ovarian development Adrienne Baillet,Béatrice Mandon-Pepin,Cédric Cabau,Elodie Poumerol,Eric Pailhouxet al. 16. International Congress on Animal Reproduction (ICAR), Jul 2008, Budapest, Hungary. Reproduction in Domestic Animals, 43 (Suppl. 3), pp.145-145, 2008, ⟨10.1111/j.1439-0531.2008.01234.x⟩ Poster de conférence istex hal-02751476v1
Chicken and pig normalised multi-tissue cDNA libraries Agnès Bonnet,Frédéric Herault,Gwenola Tosser-Klopp,Valérie Metzinger-Le Meuth,F. Benneet al. XXVIII International Conference on Animal Genetics, Aug 2002, Göttingen, Germany. pp.38, 2002, Proceedings 2002 Poster de conférence hal-02649319v1
Localisation de 10 genes sur la carte génétique de la poule Frederique Pitel,Florence Plisson-Petit,Cédric Cabau,Sandrine Lagarrigue,Mohammed Taouiset al. Colloque annuel S.F.G. - Génomique Comparative, Apr 1999, Toulouse, France. 1 p., 1999 Poster de conférence hal-02835659v1

Communication dans un congrès (36)

La transcriptomique en cellule unique révèle les processus de maturation induits dans chaque type de cellule épithéliale intestinale lors de l'introduction de l'alimentation solide Tania Malonga,Christelle Knudsen,Emeline Lhuillier,Patrick Aymard,Elodie Riantet al. CECED 2024, Club des Cellules Epithéliales Digestives, Mar 2024, Montpellier, France. pp.P12 Communication dans un congrès hal-04527178v1
Targeting the pig imprintome Jean-Noël Hubert,Nathalie Iannuccelli,Cédric Cabau,Rémy-Félix Serre,Céline Vandecasteeleet al. Advances in Genome Biology and Technology Agriculture (AGBT-Ag), Apr 2022, San Diego, United States Communication dans un congrès hal-04099166v1
Heterologous hybridization using the human exome - a molecular tool to target and identify major genes Nathalie Iannuccelli,Cédric Cabau,Julien Sarry,Olivier Bouchez,Yvon Billonet al. World Rabbit Congress, Nov 2021, Nantes, France Communication dans un congrès hal-03404641v1
Transcriptome de la complémentarité des fonctions entre le gésier et la jonction gastroduodénale chez le poulet de chair Amélie Juanchich,Christelle Hennequet-Antier,Cédric Cabau,Elisabeth Le Bihan-Duval,Michel Jacques M.J. Ducloset al. 13. Journées de la Recherche Avicole et Palmipèdes à Foie Gras, Mar 2019, Tours, France Communication dans un congrès hal-03614963v1
Transcriptome de la complémentarité des fonctions entre le gésier et la jonction gastro-duodénale chez le poulet de chair Amélie Juanchich,Christelle Hennequet-Antier,Cédric Cabau,Elisabeth Duval,Michel Jacques M.J. Ducloset al. 13. Journées de la Recherche Avicole et Palmipèdes à Foie Gras, Mar 2019, Tours, France Communication dans un congrès hal-02735696v1
Temporal Expression of Hen Uterine transcripts at key step of shell mineralization Joël Gautron,Aurélien Brionne,Olivier Bouchez,Cédric Cabau,Christelle Hennequet-Antieret al. 14th International Symposium on Biomineralization, Oct 2017, Tsukuba, Japan Communication dans un congrès hal-02733493v1
Identification de gènes impliqués dans le contrôle des fonctions digestives chez le poulet de chair Amélie Juanchich,Christelle Hennequet-Antier,Cédric Cabau,Elisabeth Duval,Michel Jacques M.J. Ducloset al. 12. Journées de la Recherche Avicole et des Palmipèdes à Foie Gras, Apr 2017, Tours, France. 1124 p Communication dans un congrès hal-01605115v1
Temporal expression of hen uterine transcripts at key steps of shell mineralization Joël Gautron,Aurélien Brionne,Olivier Bouchez,Cédric Cabau,Christelle Hennequet-Antieret al. XVII European Symposium on the Quality of Eggs and Egg Products and XXIII European Symposium on the Quality of Poultry Meat ‘EggMeat 2017, Sep 2017, Edinburgh, United Kingdom Communication dans un congrès hal-02733489v1
Evolution of gene expression in fish: The PhyloFish database Jérémy Pasquier,Cédric Cabau,Thuy Thao Vi Nguyen,Elodie Dupin-De-Beyssat,Dany Severacet al. 8. Aquatic Models of Human Disease Conference, Jan 2017, Birmingham, United States Communication dans un congrès hal-01607208v1
Oocytomics: combining transcriptomics and proteomics to understand post-transcriptional regulation in bovine oocytes Rozenn Dalbies-Tran,Christelle Hennequet-Antier,Cédric Cabau,Leslie Angulo,Sylvain Auclairet al. 1. International Symposium of Microgenomics, Institut National de Recherche Agronomique (INRA). UMR Génétique Animale et Biologie Intégrative (1313)., May 2014, Paris, France Communication dans un congrès hal-02740352v1
DMRT1 turns on testicular differentiation during XX sex-reversal in the goat Maeva El Zaiat,Luc Jouneau,Dominique Thepot Thépot,Christophe Klopp,Aurélie Allais-Bonnetet al. 18. European Testis Workshop, May 2014, Elsinore, Denmark. 1 p Communication dans un congrès hal-01193822v1
Integration of European eel transcriptome into the PHYLOFISH project, a high throughput phylogenomic analysis designed to study teleost gene evolution after whole genome duplication Jérémy Pasquier,Cédric Cabau,P. Gouret,L. Journot,Christophe Kloppet al. Eel genome symposium 2014, Jan 2014, Leiden, Netherlands Communication dans un congrès hal-02743789v1
MilkChEST, an integrative approach of the secretion pathways in the mammary epithelial cell: molecular dissection of milk fat adaptability Christine Leroux,Christian Beauvallet,Laurence Bernard,Claudia Bevilacqua,Frédéric Bouvieret al. European Regional Conference On Goats, Jun 2013, Tromsø, Norway Communication dans un congrès hal-01194090v1
New advances on egg proteins and their potential for food and non food uses Joël Gautron,Sophie Réhault-Godbert,Aurélien Brionne,Cédric Cabau,Nicolas Guyotet al. 104th AOCS Annual Meeting and Expo, Apr 2013, Montreal, Canada Communication dans un congrès hal-02808179v1
Transcriptome diversity at multi- and single-cell levels in rabbit pluripotent stem cells Yann Tapponnier,Pierre Osteil,Barbara Panneau,Luc Jouneau,Cédric Cabauet al. 11. Annual Meeting International Society for Stem Cell Research (ISSCR), International Society of Stem Cell Research (ISSCR). INT., Jun 2013, Boston, United States. 1 p Communication dans un congrès hal-01198231v1
An immune-related gene evolved into a conserved master sex-determining gene in the salmonid fish family Ayaka Yano,René Guyomard,Barbara Nicol,Elodie Jouanno,Edwige Quilletet al. Conférences Jacques Monod: “Avancées récentes sur l'évolution du sexe et des systèmes génétiques", May 2013, Roscoff, France Communication dans un congrès hal-01194065v1
Involvment of [i]DMRT1[/i] in XX sex-reversed polled goats Maeva Elzaiat,Dominique Thepot Thépot,Luc Jouneau,Aurélie Allais-Bonnet,Christophe Kloppet al. 6. International Symposium on the Biology of Vertebrate Sex Determination, Vertebrate-biosex. USA., Apr 2012, Kona, Hawai, United States. 1 p Communication dans un congrès hal-01019618v1
New insights into sex differentiation and determination for a better sex control in salmonids Ayaka Yano,Barbara B. Nicol,René R. Guyomard,Elodie Jouanno,Edwige Quilletet al. Aqua 2012, European Aquaculture Society (EAS). BEL., Sep 2012, Prague, Czech Republic Communication dans un congrès hal-02744513v1
GENIDOV: Gene network involved in ovarian development in goat and mouse Eric Pailhoux,Maëlle Pannetier,Dominique Thepot Thépot,Geneviève Jolivet,Ikrame Naciriet al. 9. Colloque Agenae / ANR, Colloque Génomique Animale et Microbienne, AGENAE - Analyse du Génome des Animaux d'Elevage (AGENAE). FRA., Mar 2012, La Rochelle, France. 1 p Communication dans un congrès hal-01193796v1
Goat genome assembly, availability of an international 50K SNP chip and RH panel: an update of the international goat genome consortium projects Gwenola Tosser-Klopp,Cédric Cabau,Andre Eggen,Thomas Faraut,Henri Heuvenet al. 20. Conference of the Plant & Animal Genome, Plant & Animal Genome (PAG). USA., Jan 2012, San Diego, United States. 28 diapositives Communication dans un congrès hal-01019243v1
Activités biologiques du jaune d'oeuf : exemple du système protéases/antiprotéases Sophie Réhault-Godbert,Marie-Christine Bourin,Joël Gautron,Magali Berges,Christelle Hennequet-Antieret al. Journée Technique Avicole 2012 du SYSAAF, Syndicat des Sélectionneurs Avicoles et Aquacoles Français (SYSAAF). FRA., Mar 2012, Tours, France Communication dans un congrès hal-02809620v1
New insights on sex determination in salmonids Ayaka Yano,René Guyomard,Elodie Jouanno,Barbara Nicol,Edwige Quilletet al. 6. International Symposium on The Biology of Vertebrate Sex Determination, Apr 2012, Kona (Hawaii), United States. pp.45 Communication dans un congrès hal-01019433v1
Caractérisation d'un gène déterminant majeur du sexe conservé chez les salmonidés Ayaka Yano,René R. Guyomard,Elodie Jouanno,Barbara B. Nicol,Christophe Kloppet al. 3. Journées de la Recherche Filière Piscicole, Jul 2012, Paris, France. pp.109 Communication dans un congrès hal-01000327v1
New insights in egg proteins applying cDNA microarrays to hen oviduct and liver and extensive proteomic data mining Joël Gautron,Aurélien Brionne,Marie-Christine Bourin,Christelle Hennequet-Antier,Cédric Cabauet al. 5. Combined Workshop on Fundamental Physiology and Perinatal Development in Poultry, Aug 2011, Wageningen, Netherlands Communication dans un congrès hal-02802514v1
Towards a high density SNP International Goat Chip Gwenola Tosser-Klopp,Abdullah Johari Jiken,Philippe Bardou,Cédric Cabau,Patrice Dehaiset al. Plant and Animal Genome, Jan 2011, San Diégo, United States Communication dans un congrès hal-01194170v1
New insights in egg white proteins using cDNA microarrays and extensive proteomic data mining Joël Gautron,Aurélien Brionne,Christelle Hennequet-Antier,Cédric Cabau,Nicolas Guyotet al. 14. European Symposium on the Quality of Eggs and Egg Products, Sep 2011, Leipzig, Germany Communication dans un congrès hal-02747495v1
Identification of transcripts involved in meiosis and follicle formation during ovine ovary development Béatrice Mandon-Pepin,Adrienne Baillet,Cédric Cabau,Elodie Poumerol,Eric Pailhouxet al. 6. Workshop on Mammalian Folliculogenesis and oogenesis : from basic science to the clinic, Oct 2009, Potsdam, Germany. p:18 Communication dans un congrès hal-02819495v1
Screening of novel uterine proteins involved in eggshell formation using cDNA microarrays Vincent Jonchère,Sophie Réhault-Godbert,L. Cogburn,Christelle Hennequet-Antier,Cédric Cabauet al. 19. European Symposium on the Quality of Poultry Meat. 13. European Symposium on the Quality of Eggs and Eggs Products., Jun 2009, Turku, Finland Communication dans un congrès hal-02751521v1
Identification par une approche transcriptomique d'un ensemble de protéines potentiellement impliquées dans la formation de la coquille de l'oeuf de poule Vincent Jonchère,Yves Y. Nys,L. Cogburn,Christelle Hennequet-Antier,Cédric Cabauet al. 11. Journées Françaises de Biologie des Tissus Minéralisés, Mar 2009, Nice, France Communication dans un congrès hal-02756159v1
Identification de nouveaux genes de la coquille potentiellement impliqués dans les défenses naturelles de l'oeuf Vincent Jonchère,Sophie Réhault-Godbert,Christelle Hennequet,Cédric Cabau,Vonick Sibutet al. 8. Journées de la Recherche Avicole, Mar 2009, Saint-Malo, France Communication dans un congrès hal-02751014v1
Use of high-throughput methods to identify novel egg components Joël Gautron,Vincent Jonchère,Christelle Hennequet-Antier,Cédric Cabau,Valérie Labaset al. 25. Congrès de la Société d'Electrophorèse et d'Analyse Protéomique, Oct 2008, Tours, France Communication dans un congrès hal-02751763v1
Vers l'obtention d'une carte physique chez la truite Arc-en-ciel. Carine Genet,Patrice Dehais,Cédric Cabau,Y. Palti Journées Scientifiques, Département de Génétique Animale, Apr 2008, Lacanau, France Communication dans un congrès hal-02752590v1
Rabbit as a model for embryo development Véronique Duranthon,Roger Léandri,Catherine Archilla,Cédric Vignal,Cédric Cabauet al. 2. International Meeting on Rabbit Biotechnology, Jun 2007, Jouy en Josas, France. 1 p Communication dans un congrès hal-02823822v1
A pig normalised multi-tissue cDNA library Agnès Bonnet,Gwenola Tosser-Klopp,Francis Benne,Cédric Cabau,S. Villegeret al. 7th World Congress on Genetics Applied to Livestock Production, 2002, Montpellier, pp.Inconnu Communication dans un congrès hal-02832597v1
High resolution mapping of 148 type I markers in pigs Cédric Cabau,Sophie S. Leroux,Yvette Lahbib Mansais,Gwenola Tosser-Klopp,Denis Milanet al. 27. International Conference on Animal Genetics, Jul 2000, Minnesota, United States Communication dans un congrès hal-02769097v1
Exemple d'approche fonctionnelle : la fonction ovarienne du porc. Gwenola Tosser-Klopp,Catherine Clouscard-Martinato,Francis Benne,Agnès Bonnet,Cédric Cabauet al. Séminaire, La génétique moléculaire et ses applications, Sep 1999, Cap d Agde, France Communication dans un congrès hal-02766107v1

Pré-publication, Document de travail (7)

A methyl-seq tool to capture genomic imprinted loci Jean-Noël Hubert,Nathalie Iannuccelli,Cédric Cabau,Eva Jacomet,Yvon Billonet al. 2023 Pré-publication, Document de travail hal-04099373v1
Sex chromosome and sex locus characterization in the goldfish, Carassius auratus Ming Wen,Romain Feron,Qiaowei Pan,Justine Guguin,Elodie Jouannoet al. 2019 Pré-publication, Document de travail (preprint/prepublication) hal-02790844v1
Synteny-guided resolution of gene trees clarifies the functional impact of whole genome duplications Elise Parey,Alexandra Louis,Cédric Cabau,Yann Guiguen,Hugues Roest-Crolliuset al. 2020 Pré-publication, Document de travail (preprint/prepublication) hal-02791038v1
Genome sequence of the euryhaline Javafish medaka, Oryzias javanicus: a small aquarium fish model for studies on adaptation to salinity Yusuke Takehana,Margot Zahm,Cédric Cabau,Christophe Klopp,Céline Roqueset al. 2019 Pré-publication, Document de travail (preprint/prepublication) hal-02790965v1
Characterization of a Y-specific duplication/insertion of the anti-Mullerian hormone type II receptor gene based on a chromosome-scale genome assembly of yellow perch, Perca flavescens Romain Feron,Margot Zahm,Cédric Cabau,Christophe Klopp,Céline Roqueset al. 2019 Pré-publication, Document de travail (preprint/prepublication) hal-02790966v1
Livestock genome annotation: transcriptome and chromatin structure profiling in cattle, goat, chicken and pig Sylvain Foissac,Sarah Djebali,Kylie Munyard,Nathalie Vialaneix,Andrea Rauet al. 2018 Pré-publication, Document de travail (preprint/prepublication) hal-02791029v1
Evolution of gene expression after whole-genome duplication: new insights from the spotted gar genome Jérémy Pasquier,Ingo Braasch,Peter Batzel,Cédric Cabau,Jérôme Montfortet al. 2017 Pré-publication, Document de travail (preprint/prepublication) hal-02791027v1

Logiciel (1)

DRAP: de novo RNA-Seq Assembly Pipeline Cédric Cabau,Frédéric Escudié,Anis Djari,Yann Guiguen,Julien Bobeet al. 2017 Logiciel hal-02789567v1

Chapitre d'ouvrage (1)

Molecules involved in chemical defence of the chicken egg Sophie Réhault-Godbert,Virginie Herve-Grepinet,Joël Gautron,Cédric Cabau,Yves Y. Nyset al. Improving the safety and quality of eggs and egg products. Vol.1 Egg chemistry, production and consumption, 213, Woodhead Publishing Ltd, 2011, Woodhead Publishing Series in Food Science, Technology and Nutrition, 978-1-84569-754-9 Chapitre d'ouvrage hal-02805911v1