Célia Michotey

Identifiants chercheurs

IdHAL :

celia-michotey

ORCID :

0000-0003-1877-1703

Présentation

Publications

Article dans une revue (13)

BrAPI v2: real-world applications for data integration and collaboration in the breeding and genetics community Peter Selby,Rafael Abbeloos,Anne-Francoise Adam-Blondon,Francisco J. Agosto-Pérez,Michael Alauxet al. Database - The journal of Biological Databases and Curation, 2025, 2025, pp.baaf048. ⟨10.1093/database/baaf048⟩ Article dans une revue hal-05290990v1
Between but Not Within-Species Variation in the Distribution of Fitness Effects Jennifer James,Chedly Kastally,Katharina B Budde,Santiago C. Gonzalez-Martinez,Pascal Milesiet al. Molecular Biology and Evolution, 2023, 40 (11), ⟨10.1093/molbev/msad228⟩ Article dans une revue hal-04598142v1
Survival and growth of 711 forest tree taxa in eight French arboretums from three different climate regions Catherine Ducatillion,Thierry Lamant,Richard Bellanger,Valentin Bouttier,Jean-Charles Bastienet al. Annals of Sylviculture Research, 2022, 47 (1), pp.30-38. ⟨10.12899/asr-2325⟩ Article dans une revue (data paper) hal-03858907v1
The GenTree Platform: growth traits and tree-level environmental data in 12 European forest tree species Lars Opgenoorth,Benjamin Dauphin,Raquel Benavides,Katrin Heer,Paraskevi Alizotiet al. GigaScience, 2021, 10 (3), pp.giab010. ⟨10.1093/gigascience/giab010⟩ Article dans une revue (data paper) hal-03282821v1
The GenTree Leaf Collection: Inter‐ and intraspecific leaf variation in seven forest tree species in Europe Raquel Benavides,Bárbara Carvalho,Cristina Bastias,David López‐quiroga,Antonio Maset al. Global Ecology and Biogeography, 2021, 30 (3), pp.590-597. ⟨10.1111/geb.13239⟩ Article dans une revue (data paper) hal-03282266v1
Enabling reusability of plant phenomic datasets with MIAPPE 1.1 Evangelia Papoutsoglou,Daniel Faria,Daniel Arend,Elizabeth Arnaud,Ioannis Athanasiadiset al. New Phytologist, 2020, 227 (1), pp.260-273. ⟨10.1111/nph.16544⟩ Article dans une revue hal-02949641v1
Author Correction: The GenTree Dendroecological Collection, tree-ring and wood density data from seven tree species across Europe Elisabet Martínez-Sancho,Lenka Slámová,Sandro Morganti,Claudio Grefen,Barbara Carvalhoet al. Scientific Data , 2020, 7 (1), ⟨10.1038/s41597-020-0447-1⟩ Article dans une revue hal-03282224v1
Applying FAIR principles to plant phenotypic data management in GnpIS Cyril Pommier,Célia Michotey,Guillaume Cornut,Pierre Roumet,Eric Duchêneet al. Plant Phenomics, 2019, 2019, pp.1-15. ⟨10.34133/2019/1671403⟩ Article dans une revue hal-02624031v1
Linking the International Wheat Genome Sequencing Consortium bread wheat reference genome sequence to wheat genetic and phenomic data Michael Alaux,Jane Rogers,Thomas Letellier,Raphaël Flores,Françoise Alfamaet al. Genome Biology, 2018, 19 (1), pp.905-911. ⟨10.1186/s13059-018-1491-4⟩ Article dans une revue hal-02278879v1
Oak genome reveals facets of long lifespan Christophe Plomion,Jean-Marc Aury,Joelle Amselem,Thibault Leroy,Florent Muratet al. Nature Plants, 2018, 4 (7), pp.440-452. ⟨10.1038/s41477-018-0172-3⟩ Article dans une revue hal-01820559v1
YOC, A new strategy for pairwise alignment of collinear genomes Raluca Uricaru,Célia Michotey,Hélène Chiapello,Eric Rivals BMC Bioinformatics, 2015, 16 (1), pp.16:111. ⟨10.1186/s12859-015-0530-3⟩ Article dans une revue lirmm-01170968v1
Decoding the oak genome: public release of sequence data, assembly, annotation and publication strategies. Christophe Plomion,Jean-Marc Aury,Joëlle Amselem,Tina Alaeitabar,Valérie Barbeet al. Molecular Ecology Resources, 2015, 16 (1), pp.254-265. ⟨10.1111/1755-0998.12425⟩ Article dans une revue istex hal-01579667v1
GnpIS: an information system to integrate genetic and genomic data from plants and fungi Delphine D. Steinbach,Michael M. Alaux,Joelle J. Amselem,Nathalie Choisne,Sophie S. Durandet al. Database - The journal of Biological Databases and Curation, 2013, 2013, pp.1-9. ⟨10.1093/database/bat058⟩ Article dans une revue hal-02648084v1

Communication dans un congrès (21)

Genetic Resources Data Exchange and Findability for the French Plant Genebanks Using BrAPI Michael Alaux,Anne-Françoise Adam-Blondon,Alice Boizet,Raphael Flores,Nicolas Francillonneet al. PAG 32, Jan 2025, San Diego (CA), United States Communication dans un congrès hal-05528802v1
Les services de FAIRification des données à l’URGI : cas d’utilisation par des projets/consortium nationaux et internationaux Michaël Alaux,Anne-Françoise Adam-Blondon,Françoise Alfama,Etienne Bardet,Raphaël Floreset al. Réunion annuelle de l'IFB, Dec 2025, Paris, France Communication dans un congrès hal-05530229v1
Developing infrastructures for FAIR data in plant biology Cyril Pommier,Guillaume Cornut,Michael Alaux,Windpouire Esther Dzale Yeumo,Raphaël Floreset al. Gatersleben Research Conference - Applied Bioinformatics for crops (GRC2019), IPK, Mar 2019, Gatersleben, Germany Communication dans un congrès hal-03316569v1
The IWGSC Data repository and wheat data resources hosted at URGI: Overview and perspectives Michael Alaux,Jane Rogers,Thomas Letellier,Raphaël Flores,Cyril Pommieret al. PAG XXVI - Plant and Animal Genome Conference, Jan 2018, San Diego, United States. pp.32 slides Communication dans un congrès hal-02788401v1
An integrated information system dedicated to oak genomics and genetics Joëlle Amselem,Nicolas Francillonne,Célia Michotey,Thomas Letellier,Jean-Marc Auryet al. PAG XXVI Plant and Animal Genome Conference, Jan 2018, San Diego, United States. pp.27 slides Communication dans un congrès hal-01839185v1
Data standards for plant phenotyping: MIAPPE and its implementations Cyril Pommier,Guillaume Cornut,Thomas Letellier,Célia Michotey,Pascal Neveuet al. 26. Plant and Animal Genome Conference (PAG XXVI), Jan 2018, San Diego, United States. pp.24 slides Communication dans un congrès hal-02789754v1
Developing grapevine FAIR Data Cyril Pommier,Eric Duchêne,Thierry Lacombe,Timothée Flutre,Michael Alauxet al. PAG Conference 2018, Jan 2018, San Diego, United States Communication dans un congrès hal-02738117v1
Improving the « FAIRness » of Inra’s data for plant biology and breeding Michael Alaux,Cyril Pommier,Esther Dzale Yeumo,Sophie Durand,Raphaël Floreset al. PAG XXVI - Plant and Animal Genome Conference, Jan 2018, San Diego, United States. pp.14 slides Communication dans un congrès hal-02790227v1
Findable, Accessible, Interoperable and Reusable data linked to genetic resources for plant biology and breeding at INRA Sophie Durand,Windpouire Esther Dzale Yeumo,Cyril Pommier,Michael Alaux,Guillaume Cornutet al. 4. International Symposium on Genomics of Plant Genetic Resources, Sep 2017, Giessen, Germany. pp.17 slides Communication dans un congrès hal-02791168v1
The IWGSC Reference genome browser, data mining and beyond Michael Alaux,Thomas Letellier,Françoise Alfama Depauw,Jane Rogers,Frédéric Chouletet al. PAG XXV - Plant and Animal Genome Conference, Jan 2017, San Diego, United States Communication dans un congrès hal-02788141v1
IWGSC Sequence Repository: Moving towards tools to facilitate data integration for the reference sequence of wheat Michael Alaux,Thomas Letellier,Françoise Alfama-Depauw,Véronique Jamilloux,Jane Rogerset al. PAG XXIV - Plant and Animal Genome Conference, Jan 2016, San Diego, United States Communication dans un congrès hal-01266518v1
Forest tree GnpIS: an information system dedicated to forest tree genetics, genomics and phenomics Célia Michotey,Christel Anger,François Ehrenmann,Odile Rogier,Véronique Jorgeet al. IUFRO Genomics and Forest Tree Genetics, May 2016, Arcachon, France Communication dans un congrès hal-02740283v1
Contribution to a European roadmap for data standardisation in Plant Science at URGI-INRA Cyril Pommier,Michael M. Alaux,Windpouire Esther Dzale Yeumo,Guillaume Cornut,Sophie S. Durandet al. Plant Biology Europe EPSO / FESBP 2016 Congress, Jun 2016, Prague, Czech Republic Communication dans un congrès hal-02794139v1
Phenotypic Data Exchange and Processing Using ISA-Tab Standard: transPLANT Project Use Case with GnpIS.Ephesis and Bii Cyril Pommier,Pawel Krajewski,Thomas Letellier,Hanna Cwiek,Célia Michoteyet al. 23. Plant and Animal Genome (PAG), Jan 2015, San Diego, United States Communication dans un congrès hal-02739236v1
Grape@GnpIS: Overview of the GnpIS grape genomics and genetics integrative resource Nacer Mohellibi,Nathalie Choisne,Aminah A. Keliet,Daphné Verdelet,Françoise Alfamaet al. 23. Plant and Animal Genome (PAG XXIII), Jan 2015, San Diego, United States. pp.24 slides Communication dans un congrès hal-02741780v1
GnpIS-Asso : A Generic Database for Managing and Exploiting Plant Genetic Association Studies Results Using High Throughput Genotyping and Phenotyping Data Delphine Steinbach,Guillaume Merceron,Célia Michotey,Raphaël-Gauthier Flores,Nacer Mohellibiet al. 23. Plant and Animal Genome, Jan 2015, San Diego, United States Communication dans un congrès hal-01174322v1
Information system for phenotype data: trait, trials and genotypes identification and integration Cyril Pommier,Michael M. Alaux,Sophie S. Durand,Raphaël-Gauthier R.-G. Flores,Aminah A. Kelietet al. 22. Conference Plant and Animal Genome, European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI). GBR., Jan 2014, San Diego, United States Communication dans un congrès hal-02795958v1
A generic tool for managing and exploiting genetic association studies results using high throughput genotyping and phenotyping Célia Michotey,Frédéric Sapet,Pierre Dubreuil,Jacques Le Gouis,Mathilde Causseet al. Plant Genomics Seminar 2012, Apr 2012, Pont-Royal en Provence, France Communication dans un congrès hal-01268379v1
Web services for microbial genome annotation using data integration Célia Michotey,Ludovic Legrand,Helene H. Chiapello,Valentin Loux,Annie A. Gendrault-Jacquemardet al. JOBIM 2010 : Journées Ouvertes en Biologie, Informatique et Mathématiques, Sep 2010, Montpellier, France Communication dans un congrès hal-02752226v1
Improved sensitivity and reliability of anchor based genome alignment Raluca Uricaru,Célia Michotey,Laurent Noé,Helene H. Chiapello,Eric Rivals JOBIM - Journées Ouvertes en Biologie Informatique Mathématiques2009 - Nantes :, Jun 2009, Nantes, France. 259 p Communication dans un congrès hal-02751358v1
Improved Sensitivity And Reliability Of Anchor Based Genome Alignment Raluca Uricaru,Célia Michotey,Laurent Noé,Hélène Chiapello,Eric Rivals JOBIM 2009 - 10es Journées Ouvertes en Biologie, Informatique et Mathématiques, Jun 2009, Nantes, France. pp.31-36 Communication dans un congrès lirmm-00407215v1

Poster de conférence (11)

BReIF: une e-infrastructure pour accélérer l'utilisation de ressources biologiques diversifiées Anne-Françoise Adam-Blondon,Christine Gaspin,Michèle Tixier-Boichard,Hélène Chiapello,Frédéric Chouletet al. Trans Numériques 2026, Feb 2026, Rennes, France. Poster de conférence hal-05514911v1
URGI – A scientific facility dedicated to plant bioinformatics Mariène Wan,Françoise Alfama,Johann Confais,Nicolas Francillonne,Christina Gacicet al. JOBIM 2025, Jul 2025, Bordeaux (France), France Poster de conférence hal-05186831v1
Forest Tree data in FAIDARE, a plant data discovery portal Maud Marty,Najwa Lakmouri,Cyril Pommier,Célia Michotey Plant and Animal Genome (PAG), Jan 2025, San Diego (CA), United States Poster de conférence hal-04927258v1
Learning path development for plant data management Vanita Haurheeram,Célia Michotey,Cyril Pommier,Anne-Françoise Adam-Blondon,Elixir Training Platform ELIXIR All Hands 2023, Jun 2023, Dublin, Ireland. f1000research.com, https://doi.org/10.7490/f1000research.1119444.1, 2023, ⟨10.7490/f1000research.1119444.1⟩ Poster de conférence hal-04428391v1
Research Data Management Toolkit (RDMkit): guidelines for plant phenotyping data management and sharing Erwan Le Floch,Anne-Françoise Adam-Blondon,Isabelle Alic,Bert Droesbeke,Stijn Dhondtet al. 7. International Plant Phenotyping Symposium (IPPS 2022), Sep 2022, Wageningen, Netherlands. , 2022, ⟨10.5281/zenodo.7148792⟩ Poster de conférence hal-03800325v1
GEN4x : an experimental network for studying adaptation of forest trees to climate change Bruno Fady,Guillaume Bodineau,Catherine Ducatillion,Céline Meredieu,Célia Michoteyet al. Adapting forests to climate change: methods, tools, and projects, Nov 2019, Toulouse, France Poster de conférence hal-04195084v1
Findable, Accessible, Interoperable and Reusable data linked to genetic resources for plant biology and breeding at INRA Sophie Durand,Esther Dzale Yeumo,Cyril Pommier,Michaël Alaux,Guillaume Cornutet al. Crop diversification in a changing world : Mobilizing the green gold of plant genetic resources, May 2017, Montpellier, France. , 2017, EUCARPIA Genetic Resources 2017 Poster de conférence hal-01606277v1
Detection of WUE positional candidate genes by combining QTL maps and BAC sequencing with the annotated oak genome sequence Nicolas Francillonne,Catherine Bodenes-Brezard Bodénès,François Ehrenmann,Célia Michotey,Antoine Kremeret al. Genomics and Forest Tree Genetics Conference, May 2016, Arcachon, France. , 134 p., 2016, Book of abstracts Poster de conférence hal-02741266v1
A computational architecture designed for genome annotation: oak genome sequencing project as a use case Nicolas Francillonne,Tina Alaeitabar,Françoise Alfama-Depauw,Loïc Couderc,Claire Guercheet al. JOBIM 2015 - Journées Ouvertes Biologie Informatique Mathématiques, Jul 2015, Clermont-ferrand, France. 2015 Poster de conférence hal-01246649v1
Forest tree GnpIS: an information system dedicated to forest tree genetics, genomics and phenomics Célia Michotey,Christel Anger,François Ehrenmann,Odile Rogier,Véronique Jorgeet al. 35. New Phytologist Symposium, Jun 2015, Boston, United States. 2015 Poster de conférence hal-02795537v1
GnpSeq NGS: a new tool to manage NGS data in URGI's information system (GnpIS) Célia Michotey,Nacer Mohellibi,Hadi Quesneville,Delphine Steinbach JOBIM 2012 : Journées Ouvertes en Biologie, Informatique et Mathématiques, 2012, 2012 Poster de conférence hal-02807359v1

Chapitre d'ouvrage (2)

Plant Science Data Integration, from Building Community Standards to Defining a Consistent Data Lifecycle Cyril Pommier,Frederik Coppens,Hanna Ćwiek-Kupczyńska,Daniel Faria,Sebastian Beieret al. Towards Responsible Plant Data Linkage: Data Challenges for Agricultural Research and Development, Springer International Publishing, pp.149-160, 2023, ⟨10.1007/978-3-031-13276-6_8⟩ Chapitre d'ouvrage hal-03896793v1
Mining plant genomic and genetic data using the GnpIS information system Anne-Francoise Adam-Blondon,Michael Alaux,Sophie Durand,Thomas Letellier,Guillaume Merceronet al. Aalt D.J van Dijk. Plant Genomics Databases. Methods and Protocols, 1533, Springer, 2017, Methods in Molecular Biology, 978-1-4939-6658-5. ⟨10.1007/978-1-4939-6658-5_5⟩ Chapitre d'ouvrage hal-03206731v1

Pré-publication, Document de travail (1)

Documentation Système d'Information IN-SYLVA France Christian Pichot,Philippe Clastre,Amélie Fiocca,Mariya Evtimova-Gardair,Benjamin Jailletet al. 2023 Pré-publication, Document de travail (working paper) hal-04188918v1

Rapport (4)

Rapport scientifique de la Convention MAAF-INRAE &quot;CONSERVATION + SELECTION&quot; 2023-2024 Luc E. Pâques,Catherine Bodénès,Arnaud Dowkiw,Alexis Ducousso,Bruno Fadyet al. INRAE. 2024 Rapport (rapport contrat/projet) hal-05203541v1
URGI data management plan Célia Michotey,Michael Alaux,Raphaël Flores,Anne-Françoise Adam-Blondon INRAE. 2024, 22 p Rapport (plan de gestion de données/data management plan) hal-04646807v2
Mise en place du système d'information pour la gestion des données des dispositifs expérimentaux de l’infrastructure nationale IN-SYLVA France (adaptation des forêts et l’innovation sylvicole). Christian Pichot,Philippe Clastre,Amélie Fiocca,Céline Meredieu,Laurent Saint‐andréet al. [Rapport de recherche] INRAE; OFB; CIRAD; FCBA; CNPF; ONF; Université de Rouen - Normandie. 2021, 36p Rapport (rapport de recherche) hal-03341438v1
Rapport de synthèse du chantier DOI Windpouire Esther Dzale Yeumo,Lydie Soler,Michael M. Alaux,Robert R. Bossy,Sebastien Carrereet al. [0] 2014, 47 p Rapport hal-02801364v1

Cours (2)

FAIR data PLANT PHENO 2023 Cyril Pommier,Célia Michotey,Isabelle Alic École thématique. FAIR data PLANT PHENO 2023, Paris, France. 2023 Cours hal-04459199v1
Plant Data Managment for Phenotyping Experiments Cyril Pommier,Anne-Françoise Adam-Blondon,Célia Michotey École thématique. France. 2020 Cours hal-03102944v1

Logiciel (1)

FAIDARE - FAIR Data-finder for Agronomic REsearch Cyril Pommier,Célia Michotey,Raphaël Flores,Michael Alaux,Guillaume Cornutet al. 2018, ⟨swh:1:dir:23a1de0c4fc2ce7945d06be2edd0086e1f6b0ab8;origin=https://forgemia.inra.fr/urgi-is/data-discovery.git;visit=swh:1:snp:f2b8aaeb16cb22ac2eddbb669cd72ff956e33efd;anchor=swh:1:rev:ccc4e3ae99fb7f063e356919498e8732efc4bfd2⟩ Logiciel hal-04638310v1