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Celine Scornavacca

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OrthoMaM v12: a database of curated single-copy ortholog alignments and trees to study mammalian evolutionary genomics

Rémi Allio , Frédéric Delsuc , Khalid Belkhir , Emmanuel J P Douzery , Vincent Ranwez
Nucleic Acids Research, 2024, 52 (D1), pp.D529-D535. ⟨10.1093/nar/gkad834⟩
Journal articles hal-04266876v2

The Effect of Copy Number Hemiplasy on Gene Family Evolution

Qiuyi Li , Yao-Ban Chan , Nicolas Galtier , Celine Scornavacca
Systematic Biology, inPress, ⟨10.1093/sysbio/syae007⟩
Journal articles hal-04441802v1
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Pangolin genomes offer key insights and resources for the world’s most trafficked wild mammals

Sean Heighton , Rémi Allio , Jérôme Murienne , Jordi Salmona , Hao Meng
Molecular Biology and Evolution, 2023, 40 (10), pp.msad190. ⟨10.1093/molbev/msad190⟩
Journal articles hal-04251934v1
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Deep ancestral introgression shapes evolutionary history of dragonflies and damselflies

Anton Suvorov , Celine Scornavacca , M Stanley Fujimoto , Paul Bodily , Mark Clement
Systematic Biology, 2022, 71 (3), pp.526-546. ⟨10.1093/sysbio/syab063⟩
Journal articles hal-03321815v1
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Éclairer les origines de la COVID-19 à partir de l’analyse comparée des génomes viraux

Stéphane Guindon , Celine Scornavacca
Interstices, 2022
Journal articles hal-03872208v1
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The large-sample asymptotic behaviour of quartet-based summary methods for species tree inference

Yao-Ban Chan , Qiuyi Li , Celine Scornavacca
Journal of Mathematical Biology, 2022, 85 (3), pp.1-22. ⟨10.1007/s00285-022-01786-4⟩
Journal articles hal-03740193v1

NetRAX: Accurate and Fast Maximum Likelihood Phylogenetic Network Inference

Sarah Lutteropp , Celine Scornavacca , Alexey Kozlov , Benoit Morel , Alexandros Stamatakis
Bioinformatics, 2022, 38 (15), pp.3725-3733. ⟨10.1101/2021.08.30.458194⟩
Journal articles hal-03682182v1
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Computing the probability of gene trees concordant with the species tree in the multispecies coalescent

Jakub Truszkowski , Celine Scornavacca , Fabio Pardi
Theoretical Population Biology, 2021, 137, pp.22-31. ⟨10.1016/j.tpb.2020.12.002⟩
Journal articles hal-03047963v1
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High-quality carnivoran genomes from roadkill samples enable comparative species delineation in aardwolf and bat-eared fox

Rémi Allio , Marie-Ka Tilak , Celine Scornavacca , Nico L Avenant , Andrew C Kitchener
eLife, 2021, 10, ⟨10.7554/eLife.63167⟩
Journal articles hal-03147106v1
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Evolutionary responses to codon usage of horizontally transferred genes in Pseudomonas aeruginosa

Martijn Callens , Celine Scornavacca , Stéphanie Bedhomme
Microbial Genomics, 2021, 7 (6), pp.000587. ⟨10.1101/2020.07.11.198432⟩
Journal articles hal-03098020v1
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On the inference of complex phylogenetic networks by Markov Chain Monte-Carlo

Charles-Elie Rabier , Vincent Berry , Marnus Stoltz , Joao D. Santos , Wensheng Wang
PLoS Computational Biology, 2021, 17 (9), pp.e1008380. ⟨10.1371/journal.pcbi.1008380⟩
Journal articles hal-03287030v2

Revisiting Shao and Sokal's B2 index of phylogenetic balance

François Bienvenu , Gabriel Cardona , Celine Scornavacca
Journal of Mathematical Biology, 2021, 83 (5), ⟨10.1007/s00285-021-01662-7⟩
Journal articles hal-03338837v1
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Evolutionary responses to codon usage of horizontally transferred genes in Pseudomonas aeruginosa: gene retention, amelioration and compensatory evolution

Martijn Callens , Celine Scornavacca , Stéphanie Bedhomme
Microbial Genomics, 2021, 7 (6), pp.000587. ⟨10.1099/mgen.0.000587⟩
Journal articles hal-03421425v1
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ASTRAL-Pro: quartet-based species tree inference despite paralogy

Chao Zhang , Celine Scornavacca , Erin K. Molloy , Siavash Mirarab
Molecular Biology and Evolution, 2020, ⟨10.1093/molbev/msaa139⟩
Journal articles hal-02866202v1
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Whole genome shotgun phylogenomics resolves the pattern and timing of swallowtail butterfly evolution

Rémi Allio , Celine Scornavacca , Benoit Nabholz , Anne-Laure Clamens , Felix A. H. Sperling
Systematic Biology, 2020, 69 (1), pp.38-60. ⟨10.1093/sysbio/syz030⟩
Journal articles hal-02125214v1
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The Multilocus Multispecies Coalescent: A Flexible New Model of Gene Family Evolution

Qiuyi Li , Celine Scornavacca , Nicolas Galtier , Yao-Ban Chan
Systematic Biology, 2020, ⟨10.1093/sysbio/syaa084⟩
Journal articles hal-02972075v1
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Generation of level-k LGT Networks

Joan Carles Pons , Celine Scornavacca , Gabriel Cardona
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2020, 17 (1), pp.158-164. ⟨10.1109/TCBB.2019.2895344⟩
Journal articles hal-02155279v1
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Treerecs: an integrated phylogenetic tool, from sequences to reconciliations.

Nicolas Comte , Benoît Morel , Damir Hasic , Laurent Guéguen , Bastien Boussau
Bioinformatics, 2020, 36 (18), pp.4822-4824. ⟨10.1093/bioinformatics/btaa615⟩
Journal articles hal-02883386v1
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Reconciling multiple genes trees via segmental duplications and losses

Riccardo Dondi , Manuel Lafond , Celine Scornavacca
Algorithms for Molecular Biology, 2019, 14 (1), ⟨10.1186/s13015-019-0139-6⟩
Journal articles hal-02154306v1
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On the Weighted Quartet Consensus problem

Manuel Lafond , Celine Scornavacca
Theoretical Computer Science, 2019, 769, pp.1-17. ⟨10.1016/j.tcs.2018.10.005⟩
Journal articles hal-02154302v1
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Correction: Reconstructible Phylogenetic Networks: Do Not Distinguish the Indistinguishable

Fabio Pardi , Celine Scornavacca
PLoS Computational Biology, 2019, 15 (6), pp.e1007137. ⟨10.1371/journal.pcbi.1007137.s001⟩
Journal articles lirmm-01194638v2
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Finding a most parsimonious or likely tree in a network with respect to an alignment

Steven Kelk , Fabio Pardi , Celine Scornavacca , Leo van Iersel
Journal of Mathematical Biology, 2019, 78 (1-2), pp.527-547. ⟨10.1007/s00285-018-1282-2⟩
Journal articles lirmm-01964467v1
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An O ( n log n ) Time Algorithm for Computing the Path-Length Distance Between Trees

David Bryant , Celine Scornavacca
Algorithmica, 2019, 81 (9), pp.3692-3706. ⟨10.1007/s00453-019-00594-5⟩
Journal articles hal-02163060v1
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Pervasive hybridizations in the history of wheat relatives

Sylvain Glémin , Celine Scornavacca , Jacques Dainat , Concetta Burgarella , Veronique Viader
Science Advances , 2019, 5 (5), pp.eaav9188. ⟨10.1126/sciadv.aav9188⟩
Journal articles hal-02144799v1
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OrthoMaM v10: Scaling-Up Orthologous Coding Sequence and Exon Alignments with More than One Hundred Mammalian Genomes

Celine Scornavacca , Khalid Belkhir , Jimmy Lopez , Rémy Dernat , Frédéric Delsuc
Molecular Biology and Evolution, 2019, 36 (4), pp.861-862. ⟨10.1093/molbev/msz015⟩
Journal articles hal-02139915v1
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Generation of Binary Tree-Child phylogenetic networks

Gabriel Cardona , Joan Carles Pons , Celine Scornavacca
PLoS Computational Biology, 2019, 15 (10), pp.e1007440. ⟨10.1371/journal.pcbi.1007347⟩
Journal articles hal-02417275v1
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Improved Maximum Parsimony Models for Phylogenetic Networks

Leo van Iersel , Mark Jones , Celine Scornavacca
Systematic Biology, 2018, 67 (3), pp.518-542. ⟨10.1093/sysbio/syx094⟩
Journal articles hal-02154860v1
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Exploring the Tiers of Rooted Phylogenetic Network Space Using Tail Moves

Remie Janssen , Mark Jones , Péter Erdős , Leo van Iersel , Celine Scornavacca
Bulletin of Mathematical Biology, 2018, 80 (8), pp.2177-2208. ⟨10.1007/s11538-018-0452-0⟩
Journal articles hal-02154852v1
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RecPhyloXML: a format for reconciled gene trees

Wandrille Duchemin , Guillaume Gence , Anne-Muriel Arigon Chifolleau , Lars Arvestad , Mukul Bansal
Bioinformatics, 2018, 34 (21), pp.3646-3652. ⟨10.1093/bioinformatics/bty389⟩
Journal articles lirmm-01800296v1
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A phylogenetic framework of the legume genus Aeschynomene for comparative genetic analysis of the Nod-dependent and Nod-independent symbioses

Laurent Brottier , Clémence Chaintreuil , Paul Simion , Celine Scornavacca , Ronan Rivallan
BMC Plant Biology, 2018, 18 (1), ⟨10.1186/s12870-018-1567-z⟩
Journal articles hal-01961745v1
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ANISEED 2017: extending the integrated ascidian database to the exploration and evolutionary comparison of genome-scale datasets

Matija Brozovic , Christelle Dantec , Justine Dardaillon , Delphine Dauga , Emmanuel Faure
Nucleic Acids Research, 2018, 46 (D1), pp.D718-D725. ⟨10.1093/nar/gkx1108⟩
Journal articles hal-01636650v1
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Rearrangement Moves on Rooted Phylogenetic Networks

Philippe Gambette , Leo van Iersel , Mark Jones , Manuel Lafond , Fabio Pardi
PLoS Computational Biology, 2017, 13 (8), pp.e1005611. ⟨10.1371/journal.pcbi.1005611⟩
Journal articles hal-01572624v2
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On the fixed parameter tractability of agreement-based phylogenetic distances

Magnus Bordewich , Celine Scornavacca , Nihan Tokac , Mathias Weller
Journal of Mathematical Biology, 2017, 74 (1-2), pp.239-257. ⟨10.1007/s00285-016-1023-3⟩
Journal articles lirmm-01348420v1
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Inferring incomplete lineage sorting, duplications, transfers and losses with reconciliations

Yao-Ban Chan , Vincent Ranwez , Celine Scornavacca
Journal of Theoretical Biology, 2017, 432, pp.1-13. ⟨10.1016/j.jtbi.2017.08.008⟩
Journal articles hal-02154862v1
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Resolution and reconciliation of non-binary gene trees with transfers, duplications and losses

Edwin Jacox , Mathias Weller , Eric Tannier , Celine Scornavacca
Bioinformatics, 2017, 33 (7), pp.980-987. ⟨10.1093/bioinformatics/btw778⟩
Journal articles hal-01526643v1
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Fast algorithm for the reconciliation of gene trees and LGT networks

Celine Scornavacca , Joan Carles Pons Mayol , Gabriel Cardona
Journal of Theoretical Biology, 2017, 418, pp.129-137. ⟨10.1016/j.jtbi.2017.01.024⟩
Journal articles hal-02154890v1
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A Resolution of the Static Formulation Question for the Problem of Computing the History Bound

Julia Matsieva , Steven Kelk , Celine Scornavacca , Chris Whidden , Dan Gusfield
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2017, 14 (2), pp.404-417. ⟨10.1109/TCBB.2016.2527645⟩
Journal articles hal-02154874v1
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Reconstructing Phylogenetic Level-1 Networks from Nondense Binet and Trinet Sets

Katharina Huber , Leo van Iersel , Vincent Moulton , Celine Scornavacca , Taoyang Wu
Algorithmica, 2017, 77 (1), pp.173-200. ⟨10.1007/s00453-015-0069-8⟩
Journal articles hal-02154892v1
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DeCoSTAR: Reconstructing the ancestral organization of genes or genomes using reconciled phylogenies

Wandrille Duchemin , Yoann Anselmetti , Murray Patterson , Yann Ponty , Sèverine Bérard
Genome Biology and Evolution, 2017, 9 (5), pp.1312-1319. ⟨10.1093/gbe/evx069⟩
Journal articles hal-01503766v2
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Incomplete Lineage Sorting in Mammalian Phylogenomics

Celine Scornavacca , Nicolas Galtier
Systematic Biology, 2016, 66, pp.112 - 120. ⟨10.1093/sysbio/syw082⟩
Journal articles hal-01815360v1
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ecceTERA: Comprehensive gene tree-species tree reconciliation using parsimony

Edwin Jacox , Cedric Chauve , Gergely J Szöllősi , Yann Ponty , Celine Scornavacca
Bioinformatics, 2016, 32 (13), pp.2056-2058. ⟨10.1093/bioinformatics/btw105⟩
Journal articles hal-01276903v1
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Fast and accurate branch lengths estimation for phylogenomic trees

Manuel Binet , Olivier Gascuel , Celine Scornavacca , Emmanuel J.P. Douzery , Fabio Pardi
BMC Bioinformatics, 2016, 17 (23), ⟨10.1186/s12859-015-0821-8⟩
Journal articles lirmm-01236485v1
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Inferring gene duplications, transfers and losses can be done in a discrete framework

Vincent Ranwez , Celine Scornavacca , Jean-Philippe Doyon , Vincent Berry
Journal of Mathematical Biology, 2016, 72 (7), pp.1811-1844. ⟨10.1007/s00285-015-0930-z⟩
Journal articles hal-01370854v1
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Do branch lengths help to locate a tree in a phylogenetic network?

Philippe Gambette , Leo van Iersel , Steven Kelk , Fabio Pardi , Celine Scornavacca
Bulletin of Mathematical Biology, 2016, 78 (9), pp.1773-1795. ⟨10.1007/s11538-016-0199-4⟩
Journal articles hal-01372824v1
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On the consistency of orthology relationships

Mark Jones , Christophe Paul , Celine Scornavacca
BMC Bioinformatics, 2016, 17 (S14), pp.11-14. ⟨10.1186/s12859-016-1267-3⟩
Journal articles lirmm-01481206v1
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ANISEED 2015: a digital framework for the comparative developmental biology of ascidians

Matija Brozovic , Cyril Martin , Christelle Dantec , Delphine Dauga , Mickäel Mendez
Nucleic Acids Research, 2016, 44 (D1), pp.D808-D818. ⟨10.1093/nar/gkv966⟩
Journal articles hal-01295171v1
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Kernelizations for the hybridization number problem on multiple nonbinary trees

Leo van Iersel , Steven Kelk , Celine Scornavacca
Journal of Computer and System Sciences, 2016, 82 (6), pp.1075-1089. ⟨10.1016/j.jcss.2016.03.006⟩
Journal articles hal-02154926v1

Efficient FPT Algorithms for (Strict) Compatibility of Unrooted Phylogenetic Trees

Julien Baste , Christophe Paul , Ignasi Sau , Celine Scornavacca
Bulletin of Mathematical Biology, 2016, 79 (4), pp.920-938. ⟨10.1007/s11538-017-0260-y⟩
Journal articles lirmm-03113710v1
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SylvX: a viewer for phylogenetic tree reconciliations

François Chevenet , Jean-Philippe Doyon , Celine Scornavacca , Edwin Jacox , Emmanuelle Jousselin
Bioinformatics, 2016, 32 (4), pp.608-610. ⟨10.1093/bioinformatics/btv625⟩
Journal articles hal-01942605v1
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Phylogenetic incongruence through the lens of Monadic Second Order logic

Steven Kelk , Leo van Iersel , Celine Scornavacca , Mathias Weller
Journal of Graph Algorithms and Applications, 2016, 20 (2), pp.189-215. ⟨10.7155/jgaa.00390⟩
Journal articles lirmm-01348425v1
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Efficient algorithms for reconciling gene trees and species networks via duplication and loss events

Thu-Hien To , Celine Scornavacca
BMC Genomics, 2015, 16 (S10), pp.4 - 7. ⟨10.1186/1471-2164-16-S10-S6⟩
Journal articles hal-02155241v1
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A fast method for calculating reliable event supports in tree reconciliations via Pareto optimality

Thu Hien To , Edwin Jacox , Vincent Ranwez , Celine Scornavacca
BMC Bioinformatics, 2015, 16, pp.1-15. ⟨10.1186/s12859-015-0803-x⟩
Journal articles hal-01595105v1
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Joint amalgamation of most parsimonious reconciled gene trees

Celine Scornavacca , Edwin Jacox , Gergely Szöllősi
Bioinformatics, 2015, 31 (6), pp.841-848. ⟨10.1093/bioinformatics/btu728⟩
Journal articles hal-02154935v1
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Exploring the space of gene/species reconciliations with transfers

Yao-Ban Chan , Vincent Ranwez , Celine Scornavacca
Journal of Mathematical Biology, 2015, 71 (5), pp.1179-1209. ⟨10.1007/s00285-014-0851-2⟩
Journal articles hal-01268903v1
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On Computing the Maximum Parsimony Score of a Phylogenetic Network

Mareike Fischer , Leo van Iersel , Steven Kelk , Celine Scornavacca
SIAM Journal on Discrete Mathematics, 2015, 29 (1), pp.559-585. ⟨10.1137/140959948⟩
Journal articles hal-02154929v1
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Constructing Minimal Phylogenetic Networks from Softwired Clusters is Fixed Parameter Tractable

Steven Kelk , Celine Scornavacca
Algorithmica, 2014, 68 (4), pp.886-915. ⟨10.1007/s00453-012-9708-5⟩
Journal articles hal-02154980v1
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A practical approximation algorithm for solving massive instances of hybridization number for binary and nonbinary trees

Leo Van Iersel , Steven Kelk , Nela Lekić , Celine Scornavacca
BMC Bioinformatics, 2014, 15 (1), pp.296-302. ⟨10.1186/1471-2105-15-127⟩
Journal articles hal-02154944v1

The agreement problem for unrooted phylogenetic trees is FPT

Celine Scornavacca , Leo Van Iersel , Steven Kelk , David Bryant
Journal of Graph Algorithms and Applications, 2014, 18 (3), pp.385-392. ⟨10.7155/jgaa.00327⟩
Journal articles hal-02154951v1
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OrthoMaM v8: A Database of Orthologous Exons and Coding Sequences for Comparative Genomics in Mammals

Emmanuel J.P. Douzery , Celine Scornavacca , Jonathan Romiguier , Khalid Belkhir , Nicolas Galtier
Molecular Biology and Evolution, 2014, 31 (7), pp.1923-1928. ⟨10.1093/molbev/msu132⟩
Journal articles hal-01133634v1
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Support measures to estimate the reliability of evolutionary events predicted by reconciliation methods

Thi-Hau Nguyen , Vincent Ranwez , Vincent Berry , Celine Scornavacca
PLoS ONE, 2013, 8 (10), pp.e73667. ⟨10.1371/journal.pone.0073667⟩
Journal articles hal-01189798v1
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Bio++ : Efficient Extensible Libraries and Tools for Computational Molecular Evolution

Laurent Gueguen , Sylvain Gaillard , Bastien Boussau , Manolo Gouy , Mathieu Groussin
Molecular Biology and Evolution, 2013, 30 (8), pp.1745 - 1750. ⟨10.1093/molbev/mst097⟩
Journal articles hal-01209906v1
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Reconciliation-based detection of co-evolving gene families

Yao-Ban Chan , Vincent Ranwez , Celine Scornavacca
BMC Bioinformatics, 2013, 14, 15 p. ⟨10.1186/1471-2105-14-332⟩
Journal articles hal-01189789v1
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Representing a set of reconciliations in a compact way

Celine Scornavacca , Wojciech Paprotny , Vincent Berry , Vincent Ranwez
Journal of Bioinformatics and Computational Biology, 2013, 11 (2), pp.1250025. ⟨10.1142/S0219720012500254⟩
Journal articles lirmm-00818801v1
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Dendroscope 3: An Interactive Tool for Rooted Phylogenetic Trees and Networks

Daniel Huson , Celine Scornavacca
Systematic Biology, 2012, 61 (6), pp.1061-1067. ⟨10.1093/sysbio/sys062⟩
Journal articles hal-02154987v1
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Cycle killer... qu'est-ce que c'est? On the comparative approximability of hybridization number and directed feedback vertex set

Steven Kelk , Leo van Iersel , Nela Lekic , Simone Linz , Celine Scornavacca
SIAM Journal on Discrete Mathematics, 2012, 26 (4), pp.1635-1656. ⟨10.1137/120864350⟩
Journal articles hal-00765019v1
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A First Step Toward Computing All Hybridization Networks For Two Rooted Binary Phylogenetic Trees

Celine Scornavacca , Simone Linz , Benjamin Albrecht
Journal of Computational Biology, 2012, 19 (11), pp.1227-1242. ⟨10.1089/cmb.2012.0192⟩
Journal articles hal-02154992v1
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Fast computation of minimum hybridization networks

Benjamin Albrecht , Celine Scornavacca , Alberto Cenci , Daniel Huson
Bioinformatics, 2012, 28 (2), pp.191-197. ⟨10.1093/bioinformatics/btr618⟩
Journal articles hal-02155006v1
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Tanglegrams for rooted phylogenetic trees and networks

Celine Scornavacca , Franziska Zickmann , Daniel Huson
Bioinformatics, 2011, 27 (13), pp.i248-i256. ⟨10.1093/bioinformatics/btr210⟩
Journal articles hal-02155176v1
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Multigenic phylogeny and analysis of tree incongruences in Triticeae (Poaceae)

Juan-Sebastian Escobar , Celine Scornavacca , Alberto Cenci , Claire Guilhaumon , Sylvain Santoni
BMC Evolutionary Biology, 2011, 11 (181), 17 p. ⟨10.1186/1471-2148-11-181⟩
Journal articles hal-01499047v1
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A Survey of Combinatorial Methods for Phylogenetic Networks

Daniel Huson , Celine Scornavacca
Genome Biology and Evolution, 2011, 3, pp.23-35. ⟨10.1093/gbe/evq077⟩
Journal articles hal-02155011v1
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Building species trees from larger parts of phylogenomic databases

Celine Scornavacca , Vincent Berry , Vincent Ranwez
Information and Computation, 2011, 209 (3), pp.590-605. ⟨10.1016/j.ic.2010.11.022⟩
Journal articles lirmm-00825050v1
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Exploring the Solution Space of Sorting by Reversals, with Experiments and an Application to Evolution

Marília D.V. Braga , Marie-France Sagot , Celine Scornavacca , Eric Tannier
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2008, 5 (3), pp.348-356. ⟨10.1109/TCBB.2008.16⟩
Journal articles hal-00428206v1
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PhySIC IST : cleaning source trees to infer more informative supertrees

Celine Scornavacca , Vincent Berry , Vincent Lefort , Emmanuel J.P. Douzery , Vincent Ranwez
BMC Bioinformatics, 2008, 9 (413), pp.1471-2105. ⟨10.1186/1471-2105-9-413⟩
Journal articles lirmm-00324069v1
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PhySIC: A Veto Supertree Method with Desirable Properties

Vincent Ranwez , Vincent Berry , Alexis Criscuolo , Pierre-Henri Fabre , Sylvain Guillemot
Systematic Biology, 2007, 56 (5), pp.798-817. ⟨10.1080/10635150701639754⟩
Journal articles lirmm-00194235v1
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Classifying the Post-duplication Fate of Paralogous Genes

Reza Kalhor , Guillaume Beslon , Manuel Lafond , Celine Scornavacca
RECOMB-CG 2023 - 20th conference on Comparative Genomics, Apr 2023, Istanbul, Turkey. pp.1-18, ⟨10.1007/978-3-031-36911-7_1⟩
Conference papers hal-04239853v1
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Treewidth-Based Algorithms for the Small Parsimony Problem on Networks

Celine Scornavacca , Mathias Weller
21st International Workshop on Algorithms in Bioinformatics (WABI), Aug 2021, Chicago. Due to COVID-19, WABI 2021 will be held online., United States. pp.6:1, ⟨10.4230/LIPIcs.WABI.2021.6⟩
Conference papers hal-03287112v1
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Scanning Phylogenetic Networks is NP-hard

Vincent Berry , Celine Scornavacca , Mathias Weller
SOFSEM 2020 - 46th International Conference on Current Trends in Theory and Practice of Informatics, Jan 2020, Limassol, Cyprus. pp.519-530, ⟨10.1007/978-3-030-38919-2_42⟩
Conference papers hal-02353161v2

Reconciling Multiple Genes Trees via Segmental Duplications and Losses

Riccardo Dondi , Manuel Lafond , Celine Scornavacca
WABI, 2018, Helsinki, Finland. pp.5:1--5:16
Conference papers hal-02155103v1

On the Weighted Quartet Consensus problem

Manuel Lafond , Celine Scornavacca
CPM, 2018, Warsaw, Poland. pp.28:1-28:18, ⟨10.4230/LIPIcs.CPM.2017.28⟩
Conference papers hal-02155127v1
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Constructing a Consensus Phylogeny from a Leaf-Removal Distance

Cédric Chauve , Mark Jones , Manuel Lafond , Celine Scornavacca , Mathias Weller
SPIRE 2017, Sep 2017, Palermo, Italy. pp.129--143, ⟨10.1007/978-3-319-67428-5\_12⟩
Conference papers hal-02155266v1
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Efficient FPT Algorithms for (Strict) Compatibility of Unrooted Phylogenetic Trees

Julien Baste , Christophe Paul , Ignasi Sau , Celine Scornavacca
AAIM: Algorithmic Aspects in Information and Management, Jul 2016, Bergamo, Italy. pp.53-64, ⟨10.1007/978-3-319-41168-2_5⟩
Conference papers lirmm-01481368v1

Phylogenomics unravels the complex reticulated history and shifts in mating systems in wheat relatives (Aegilops/Triticum genus)

Celine Scornavacca , Sylvain Glémin , Jacques Dainat , Concetta Burgarella , Gautier Sarah
ALPHY 2016: Belgium-French meeting on Bioinformatics and Evolutionary Genomics March 17-18 2016, Institut de Biologie Physico-Chimique (IBPC). Paris, FRA. Muséum National d’Histoire Naturelle (MNHN), FRA., Mar 2016, Lille, France
Conference papers hal-02793573v1

Reconstructible phylogenetic networks: do not distinguish the indistinguishable

Fabio Pardi , Celine Scornavacca
Evolution, Jun 2015, Guarujà, Brazil
Conference papers lirmm-01237428v1
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Fast and accurate branch length estimation for phylogenomic trees: ERaBLE (Evolutionary Rates and Branch Length Estimation)

Manuel Binet , Olivier Gascuel , Celine Scornavacca , Emmanuel J.P. Douzery , Fabio Pardi
Rencontres ALPHY - Génomique Evolutive, Bioinformatique, Alignement et Phylogénie, Mar 2015, Montpellier, France
Conference papers lirmm-01237447v1

Fast and accurate branch lengths estimation for phylogenomic trees

Manuel Binet , Olivier Gascuel , Celine Scornavacca , Emmanuel J.P. Douzery , Fabio Pardi
Evolution, Jun 2015, Guarujà, Brazil
Conference papers lirmm-01237507v1

Identifiability of phylogenetic networks

Fabio Pardi , Celine Scornavacca
MCEB: Mathematical and Computational Evolutionary Biology, Jun 2014, Hameau de l'Etoile, St Martin de Londres, France
Conference papers lirmm-01237418v1

Reconstructible phylogenetic networks: no need to distinguish the indistinguishable

Fabio Pardi , Celine Scornavacca
Waiheke, Feb 2014, Waiheke, New Zealand
Conference papers lirmm-01237408v1

A practical approximation algorithm for solving massive instances of hybridization number for binary and nonbinary trees

Leo Van Iersel , Steven Kelk , Nela Lekić , Celine Scornavacca
WABI, 2012, Ljubljana, Slovenia. pp.430-440
Conference papers hal-02155227v1
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Un algorithme de parcimonie efficace pour la réconciliation d'arbres de gènes/espèces avec pertes, duplications et transferts

Jean-Philippe Doyon , Celine Scornavacca , Gergely J. Szöllősi , Vincent Ranwez , Vincent Berry
Journées Ouvertes en Biologie, Informatique et Mathématiques, Institut National d'Etudes Supérieures Agronomiques de Montpellier (Montpellier SupAgro). Montpellier, FRA., Sep 2010, Montpellier, France. pp.8
Conference papers lirmm-00833164v1
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From Gene Trees to Species Trees Through a Supertree Approach

Celine Scornavacca , Vincent Berry , Vincent Ranwez
Language and Automata Theory and Applications : LATA 2009, Apr 2009, Tarragona, Spain. pp.10-19, ⟨10.1007/978-3-642-00982-2_60⟩
Conference papers lirmm-00367086v1
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The solution space of sorting by reversals

Marília D.V. Braga , Marie-France Sagot , Celine Scornavacca , Eric Tannier
3rd International Symposium on Bioinformatics Research and Applications (ISBRA 2007), May 2007, Atlanta, GA, United States. pp.293-304, ⟨10.1007/978-3-540-72031-7_27⟩
Conference papers hal-00434566v1
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On the inference of complex phylogenetic networks by Markov Chain Monte-Carlo

Charles-Elie Rabier , Vincent Berry , Jean-Christophe Glaszmann , Fabio Pardi , Celine Scornavacca
JOBIM 2020 - 20e Journées Ouvertes de Biologie, Informatique et Mathématique, Jun 2020, Montpellier, France.
Conference poster lirmm-04027842v1
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Phylogenetics in the Genomic Era

Celine Scornavacca , Frédéric Delsuc , Nicolas Galtier
Scornavacca, Celine; Delsuc, Frédéric; Galtier, Nicolas. No commercial publisher | Authors open access book, p.p. 1-568, 2020, 978-2-9575069-0-3
Books hal-02535070v3

Phylogenetic Networks

Daniel Huson , Regula Rupp , Celine Scornavacca
Cambridge University Press, 2010
Books hal-02155099v1
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Reconciling Gene trees with Species Trees

Bastien Boussau , Celine Scornavacca
Scornavacca, Celine; Delsuc, Frédéric; Galtier, Nicolas. Phylogenetics in the Genomic Era, No commercial publisher | Authors open access book, pp.3.2:1--3.2:23, 2020
Book sections hal-02535529v1
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An Efficient Algorithm for Gene/Species Trees Parsimonious Reconciliation with Losses, Duplications and Transfers

Jean-Philippe Doyon , Celine Scornavacca , Yu Gorbunov , Gergely J. Szöllősi , Vincent Ranwez
Eric Tannier. Comparative Genomics. RECOMB-CG 2010, LNCS (6398), Springer Berlin Heidelberg, pp.93-108, 2010, 978-3-642-16181-0. ⟨10.1007/978-3-642-16181-0_9⟩
Book sections lirmm-00818889v1
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Supertree methods for phylogenomics

Celine Scornavacca
Bioinformatics [q-bio.QM]. Université Montpellier II - Sciences et Techniques du Languedoc, 2009. English. ⟨NNT : ⟩
Theses tel-00842893v1