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Celine Scornavacca

19
Documents

Publications

vincent-ranwez
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OrthoMaM v12: a database of curated single-copy ortholog alignments and trees to study mammalian evolutionary genomics

Rémi Allio , Frédéric Delsuc , Khalid Belkhir , Emmanuel J P Douzery , Vincent Ranwez
Nucleic Acids Research, 2024, 52 (D1), pp.D529-D535. ⟨10.1093/nar/gkad834⟩
Article dans une revue hal-04266876v2
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OrthoMaM v10: Scaling-Up Orthologous Coding Sequence and Exon Alignments with More than One Hundred Mammalian Genomes

Celine Scornavacca , Khalid Belkhir , Jimmy Lopez , Rémy Dernat , Frédéric Delsuc
Molecular Biology and Evolution, 2019, 36 (4), pp.861-862. ⟨10.1093/molbev/msz015⟩
Article dans une revue hal-02139915v1
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Pervasive hybridizations in the history of wheat relatives

Sylvain Glémin , Celine Scornavacca , Jacques Dainat , Concetta Burgarella , Veronique Viader
Science Advances , 2019, 5 (5), pp.eaav9188. ⟨10.1126/sciadv.aav9188⟩
Article dans une revue hal-02144799v1
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Inferring incomplete lineage sorting, duplications, transfers and losses with reconciliations

Yao-Ban Chan , Vincent Ranwez , Celine Scornavacca
Journal of Theoretical Biology, 2017, 432, pp.1-13. ⟨10.1016/j.jtbi.2017.08.008⟩
Article dans une revue hal-02154862v1
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Inferring gene duplications, transfers and losses can be done in a discrete framework

Vincent Ranwez , Celine Scornavacca , Jean-Philippe Doyon , Vincent Berry
Journal of Mathematical Biology, 2016, 72 (7), pp.1811-1844. ⟨10.1007/s00285-015-0930-z⟩
Article dans une revue hal-01370854v1
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A fast method for calculating reliable event supports in tree reconciliations via Pareto optimality

Thu Hien To , Edwin Jacox , Vincent Ranwez , Celine Scornavacca
BMC Bioinformatics, 2015, 16, pp.1-15. ⟨10.1186/s12859-015-0803-x⟩
Article dans une revue hal-01595105v1
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Exploring the space of gene/species reconciliations with transfers

Yao-Ban Chan , Vincent Ranwez , Celine Scornavacca
Journal of Mathematical Biology, 2015, 71 (5), pp.1179-1209. ⟨10.1007/s00285-014-0851-2⟩
Article dans une revue hal-01268903v1
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OrthoMaM v8: A Database of Orthologous Exons and Coding Sequences for Comparative Genomics in Mammals

Emmanuel J.P. Douzery , Celine Scornavacca , Jonathan Romiguier , Khalid Belkhir , Nicolas Galtier
Molecular Biology and Evolution, 2014, 31 (7), pp.1923-1928. ⟨10.1093/molbev/msu132⟩
Article dans une revue hal-01133634v1
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Support measures to estimate the reliability of evolutionary events predicted by reconciliation methods

Thi-Hau Nguyen , Vincent Ranwez , Vincent Berry , Celine Scornavacca
PLoS ONE, 2013, 8 (10), pp.e73667. ⟨10.1371/journal.pone.0073667⟩
Article dans une revue hal-01189798v1
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Representing a set of reconciliations in a compact way

Celine Scornavacca , Wojciech Paprotny , Vincent Berry , Vincent Ranwez
Journal of Bioinformatics and Computational Biology, 2013, 11 (2), pp.1250025. ⟨10.1142/S0219720012500254⟩
Article dans une revue lirmm-00818801v1
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Reconciliation-based detection of co-evolving gene families

Yao-Ban Chan , Vincent Ranwez , Celine Scornavacca
BMC Bioinformatics, 2013, 14, 15 p. ⟨10.1186/1471-2105-14-332⟩
Article dans une revue hal-01189789v1
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Building species trees from larger parts of phylogenomic databases

Celine Scornavacca , Vincent Berry , Vincent Ranwez
Information and Computation, 2011, 209 (3), pp.590-605. ⟨10.1016/j.ic.2010.11.022⟩
Article dans une revue lirmm-00825050v1
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Multigenic phylogeny and analysis of tree incongruences in Triticeae (Poaceae)

Juan-Sebastian Escobar , Celine Scornavacca , Alberto Cenci , Claire Guilhaumon , Sylvain Santoni
BMC Evolutionary Biology, 2011, 11 (181), 17 p. ⟨10.1186/1471-2148-11-181⟩
Article dans une revue hal-01499047v1
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PhySIC IST : cleaning source trees to infer more informative supertrees

Celine Scornavacca , Vincent Berry , Vincent Lefort , Emmanuel J.P. Douzery , Vincent Ranwez
BMC Bioinformatics, 2008, 9 (413), pp.1471-2105. ⟨10.1186/1471-2105-9-413⟩
Article dans une revue lirmm-00324069v1
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PhySIC: A Veto Supertree Method with Desirable Properties

Vincent Ranwez , Vincent Berry , Alexis Criscuolo , Pierre-Henri Fabre , Sylvain Guillemot
Systematic Biology, 2007, 56 (5), pp.798-817. ⟨10.1080/10635150701639754⟩
Article dans une revue lirmm-00194235v1

Phylogenomics unravels the complex reticulated history and shifts in mating systems in wheat relatives (Aegilops/Triticum genus)

Celine Scornavacca , Sylvain Glémin , Jacques Dainat , Concetta Burgarella , Gautier Sarah
ALPHY 2016: Belgium-French meeting on Bioinformatics and Evolutionary Genomics March 17-18 2016, Institut de Biologie Physico-Chimique (IBPC). Paris, FRA. Muséum National d’Histoire Naturelle (MNHN), FRA., Mar 2016, Lille, France
Communication dans un congrès hal-02793573v1
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Un algorithme de parcimonie efficace pour la réconciliation d'arbres de gènes/espèces avec pertes, duplications et transferts

Jean-Philippe Doyon , Celine Scornavacca , Gergely J. Szöllősi , Vincent Ranwez , Vincent Berry
Journées Ouvertes en Biologie, Informatique et Mathématiques, Institut National d'Etudes Supérieures Agronomiques de Montpellier (Montpellier SupAgro). Montpellier, FRA., Sep 2010, Montpellier, France. pp.8
Communication dans un congrès lirmm-00833164v1
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From Gene Trees to Species Trees Through a Supertree Approach

Celine Scornavacca , Vincent Berry , Vincent Ranwez
Language and Automata Theory and Applications : LATA 2009, Apr 2009, Tarragona, Spain. pp.10-19, ⟨10.1007/978-3-642-00982-2_60⟩
Communication dans un congrès lirmm-00367086v1