Celine Scornavacca

Publications

Article dans une revue (80)

Rehabilitating the benefits of gene tree correction in the presence of incomplete lineage sorting Manuel Lafond,Celine Scornavacca Peer Community In Evolutionary Biology, 2026, 6, pp.e7. ⟨10.24072/pcjournal.674⟩ Article dans une revue hal-05462550v1
Link between the Birth-Death process and the Kingman Coalescent — Applications to Phylogenetic Epidemiology Josselin Cornuault,Fabio Pardi,Celine Scornavacca Systematic Biology, 2025, 74 (4), pp.622-638. ⟨10.1093/sysbio/syaf024⟩ Article dans une revue hal-04447144v2
Time to publish responsibly: DAFNEE, a database of academia-friendly journals in ecology and evolutionary biology Nicolas Galtier,Khalid Belkhir,Pierre-Olivier Antoine,Christine Bibal,Christophe Boëteet al. Journal of Evolutionary Biology, 2025, pp.1-10. ⟨10.1093/jeb/voaf143⟩ Article dans une revue hal-05384817v2
A probabilistic algorithm for gene-species reconciliation with segmental duplications Yao-Ban Chan,Celine Scornavacca,Michael Charleston Journal of Computational Biology, In press Article dans une revue hal-05271742v1
Beyond synteny: a scalable phylogenomics method for whole-genome duplication detection Reza Kalhor,Manuel Lafond,Celine Scornavacca Journal of Computational Biology, In press Article dans une revue hal-05420504v1
The Effect of Copy Number Hemiplasy on Gene Family Evolution Qiuyi Li,Yao-Ban Chan,Nicolas Galtier,Celine Scornavacca Systematic Biology, 2024, ⟨10.1093/sysbio/syae007⟩ Article dans une revue hal-04441802v1
OrthoMaM v12: a database of curated single-copy ortholog alignments and trees to study mammalian evolutionary genomics Rémi Allio,Frédéric Delsuc,Khalid Belkhir,Emmanuel J P Douzery,Vincent Ranwezet al. Nucleic Acids Research, 2024, 52 (D1), pp.D529-D535. ⟨10.1093/nar/gkad834⟩ Article dans une revue hal-04266876v2
Pangolin genomes offer key insights and resources for the world’s most trafficked wild mammals Sean Heighton,Rémi Allio,Jérôme Murienne,Jordi Salmona,Hao Menget al. Molecular Biology and Evolution, 2023, 40 (10), pp.msad190. ⟨10.1093/molbev/msad190⟩ Article dans une revue hal-04251934v1
NetRAX: Accurate and Fast Maximum Likelihood Phylogenetic Network Inference Sarah Lutteropp,Celine Scornavacca,Alexey Kozlov,Benoit Morel,Alexandros Stamatakis Bioinformatics, 2022, 38 (15), pp.3725-3733. ⟨10.1101/2021.08.30.458194⟩ Article dans une revue hal-03682182v1
The large-sample asymptotic behaviour of quartet-based summary methods for species tree inference Yao-Ban Chan,Qiuyi Li,Celine Scornavacca Journal of Mathematical Biology, 2022, 85 (3), pp.1-22. ⟨10.1007/s00285-022-01786-4⟩ Article dans une revue hal-03740193v1
Deep ancestral introgression shapes evolutionary history of dragonflies and damselflies Anton Suvorov,Celine Scornavacca,M Stanley Fujimoto,Paul Bodily,Mark Clementet al. Systematic Biology, 2022, 71 (3), pp.526-546. ⟨10.1093/sysbio/syab063⟩ Article dans une revue hal-03321815v1
Éclairer les origines de la COVID-19 à partir de l’analyse comparée des génomes viraux Stéphane Guindon,Celine Scornavacca Interstices, 2022 Article dans une revue hal-03872208v1
Evolutionary responses to codon usage of horizontally transferred genes in Pseudomonas aeruginosa: gene retention, amelioration and compensatory evolution Martijn Callens,Celine Scornavacca,Stéphanie Bedhomme Microbial Genomics, 2021, 7 (6), pp.000587. ⟨10.1099/mgen.0.000587⟩ Article dans une revue hal-03421425v1
Evolutionary responses to codon usage of horizontally transferred genes in Pseudomonas aeruginosa Martijn Callens,Celine Scornavacca,Stéphanie Bedhomme Microbial Genomics, 2021, 7 (6), pp.000587. ⟨10.1101/2020.07.11.198432⟩ Article dans une revue hal-03098020v1
On the inference of complex phylogenetic networks by Markov Chain Monte-Carlo Charles-Elie Rabier,Vincent Berry,Marnus Stoltz,Joao D. Santos,Wensheng Wanget al. PLoS Computational Biology, 2021, 17 (9), pp.e1008380. ⟨10.1371/journal.pcbi.1008380⟩ Article dans une revue hal-03287030v2
Revisiting Shao and Sokal's B2 index of phylogenetic balance François Bienvenu,Gabriel Cardona,Celine Scornavacca Journal of Mathematical Biology, 2021, 83, pp.52. ⟨10.1007/s00285-021-01662-7⟩ Article dans une revue hal-03338837v1
Island songbirds as windows into evolution in small populations Thibault Leroy,Marjolaine Rousselle,Marie-Ka Tilak,Aude Caizergues,Céline Scornavaccaet al. Current Biology, 2021, 31 (6), pp.1303-1310. ⟨10.1016/j.cub.2020.12.040⟩ Article dans une revue hal-03784876v1
Computing the probability of gene trees concordant with the species tree in the multispecies coalescent Jakub Truszkowski,Celine Scornavacca,Fabio Pardi Theoretical Population Biology, 2021, 137, pp.22-31. ⟨10.1016/j.tpb.2020.12.002⟩ Article dans une revue hal-03047963v1
High-quality carnivoran genomes from roadkill samples enable comparative species delineation in aardwolf and bat-eared fox Rémi Allio,Marie-Ka Tilak,Celine Scornavacca,Nico L Avenant,Andrew C Kitcheneret al. eLife, 2021, 10, ⟨10.7554/eLife.63167⟩ Article dans une revue hal-03147106v1
Whole genome shotgun phylogenomics resolves the pattern and timing of swallowtail butterfly evolution Rémi Allio,Celine Scornavacca,Benoit Nabholz,Anne-Laure Clamens,Felix A. H. Sperlinget al. Systematic Biology, 2020, 69 (1), pp.38-60. ⟨10.1093/sysbio/syz030⟩ Article dans une revue hal-02125214v1
ASTRAL-Pro: quartet-based species tree inference despite paralogy Chao Zhang,Celine Scornavacca,Erin K. Molloy,Siavash Mirarab Molecular Biology and Evolution, 2020, ⟨10.1093/molbev/msaa139⟩ Article dans une revue hal-02866202v1
The Multilocus Multispecies Coalescent: A Flexible New Model of Gene Family Evolution Qiuyi Li,Celine Scornavacca,Nicolas Galtier,Yao-Ban Chan Systematic Biology, 2020, ⟨10.1093/sysbio/syaa084⟩ Article dans une revue hal-02972075v1
Generation of level-k LGT Networks Joan Carles Pons,Celine Scornavacca,Gabriel Cardona IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2020, 17 (1), pp.158-164. ⟨10.1109/TCBB.2019.2895344⟩ Article dans une revue hal-02155279v1
Treerecs: an integrated phylogenetic tool, from sequences to reconciliations. Nicolas Comte,Benoît Morel,Damir Hasic,Laurent Guéguen,Bastien Boussauet al. Bioinformatics, 2020, 36 (18), pp.4822-4824. ⟨10.1093/bioinformatics/btaa615⟩ Article dans une revue hal-02883386v1
OrthoMaM v10: Scaling-Up Orthologous Coding Sequence and Exon Alignments with More than One Hundred Mammalian Genomes Celine Scornavacca,Khalid Belkhir,Jimmy Lopez,Rémy Dernat,Frédéric Delsucet al. Molecular Biology and Evolution, 2019, 36 (4), pp.861-862. ⟨10.1093/molbev/msz015⟩ Article dans une revue hal-02139915v1
Pervasive hybridizations in the history of wheat relatives Sylvain Glémin,Celine Scornavacca,Jacques Dainat,Concetta Burgarella,Veronique Viaderet al. Science Advances , 2019, 5 (5), pp.eaav9188. ⟨10.1126/sciadv.aav9188⟩ Article dans une revue hal-02144799v1
An O ( n log n ) Time Algorithm for Computing the Path-Length Distance Between Trees David Bryant,Celine Scornavacca Algorithmica, 2019, 81 (9), pp.3692-3706. ⟨10.1007/s00453-019-00594-5⟩ Article dans une revue hal-02163060v1
Finding a most parsimonious or likely tree in a network with respect to an alignment Steven Kelk,Fabio Pardi,Celine Scornavacca,Leo van Iersel Journal of Mathematical Biology, 2019, 78 (1-2), pp.527-547. ⟨10.1007/s00285-018-1282-2⟩ Article dans une revue lirmm-01964467v1
Reconciling multiple genes trees via segmental duplications and losses Riccardo Dondi,Manuel Lafond,Celine Scornavacca Algorithms for Molecular Biology, 2019, 14 (1), ⟨10.1186/s13015-019-0139-6⟩ Article dans une revue hal-02154306v1
Correction: Reconstructible Phylogenetic Networks: Do Not Distinguish the Indistinguishable Fabio Pardi,Celine Scornavacca PLoS Computational Biology, 2019, 15 (6), pp.e1007137. ⟨10.1371/journal.pcbi.1007137.s001⟩ Article dans une revue lirmm-01194638v2
On the Weighted Quartet Consensus problem Manuel Lafond,Celine Scornavacca Theoretical Computer Science, 2019, 769, pp.1-17. ⟨10.1016/j.tcs.2018.10.005⟩ Article dans une revue hal-02154302v1
Generation of Binary Tree-Child phylogenetic networks Gabriel Cardona,Joan Carles Pons,Celine Scornavacca PLoS Computational Biology, 2019, 15 (10), pp.e1007440. ⟨10.1371/journal.pcbi.1007347⟩ Article dans une revue hal-02417275v1
RecPhyloXML: a format for reconciled gene trees Wandrille Duchemin,Guillaume Gence,Anne-Muriel Arigon Chifolleau,Lars Arvestad,Mukul Bansalet al. Bioinformatics, 2018, 34 (21), pp.3646-3652. ⟨10.1093/bioinformatics/bty389⟩ Article dans une revue lirmm-01800296v1
A phylogenetic framework of the legume genus Aeschynomene for comparative genetic analysis of the Nod-dependent and Nod-independent symbioses Laurent Brottier,Clémence Chaintreuil,Paul Simion,Celine Scornavacca,Ronan Rivallanet al. BMC Plant Biology, 2018, 18 (1), ⟨10.1186/s12870-018-1567-z⟩ Article dans une revue hal-01961745v1
Exploring the Tiers of Rooted Phylogenetic Network Space Using Tail Moves Remie Janssen,Mark Jones,Péter Erdős,Leo van Iersel,Celine Scornavacca Bulletin of Mathematical Biology, 2018, 80 (8), pp.2177-2208. ⟨10.1007/s11538-018-0452-0⟩ Article dans une revue hal-02154852v1
Improved Maximum Parsimony Models for Phylogenetic Networks Leo van Iersel,Mark Jones,Celine Scornavacca Systematic Biology, 2018, 67 (3), pp.518-542. ⟨10.1093/sysbio/syx094⟩ Article dans une revue hal-02154860v1
ANISEED 2017: extending the integrated ascidian database to the exploration and evolutionary comparison of genome-scale datasets Matija Brozovic,Christelle Dantec,Justine Dardaillon,Delphine Dauga,Emmanuel Faureet al. Nucleic Acids Research, 2018, 46 (D1), pp.D718-D725. ⟨10.1093/nar/gkx1108⟩ Article dans une revue hal-01636650v1
Fast algorithm for the reconciliation of gene trees and LGT networks Celine Scornavacca,Joan Carles Pons Mayol,Gabriel Cardona Journal of Theoretical Biology, 2017, 418, pp.129-137. ⟨10.1016/j.jtbi.2017.01.024⟩ Article dans une revue hal-02154890v1
Resolution and reconciliation of non-binary gene trees with transfers, duplications and losses Edwin Jacox,Mathias Weller,Eric Tannier,Celine Scornavacca Bioinformatics, 2017, 33 (7), pp.980-987. ⟨10.1093/bioinformatics/btw778⟩ Article dans une revue hal-01526643v1
Rearrangement Moves on Rooted Phylogenetic Networks Philippe Gambette,Leo van Iersel,Mark Jones,Manuel Lafond,Fabio Pardiet al. PLoS Computational Biology, 2017, 13 (8), pp.e1005611. ⟨10.1371/journal.pcbi.1005611⟩ Article dans une revue hal-01572624v2
Inferring incomplete lineage sorting, duplications, transfers and losses with reconciliations Yao-Ban Chan,Vincent Ranwez,Celine Scornavacca Journal of Theoretical Biology, 2017, 432, pp.1-13. ⟨10.1016/j.jtbi.2017.08.008⟩ Article dans une revue hal-02154862v1
On the fixed parameter tractability of agreement-based phylogenetic distances Magnus Bordewich,Celine Scornavacca,Nihan Tokac,Mathias Weller Journal of Mathematical Biology, 2017, 74 (1-2), pp.239-257. ⟨10.1007/s00285-016-1023-3⟩ Article dans une revue lirmm-01348420v1
Reconstructing Phylogenetic Level-1 Networks from Nondense Binet and Trinet Sets Katharina Huber,Leo van Iersel,Vincent Moulton,Celine Scornavacca,Taoyang Wu Algorithmica, 2017, 77 (1), pp.173-200. ⟨10.1007/s00453-015-0069-8⟩ Article dans une revue hal-02154892v1
A Resolution of the Static Formulation Question for the Problem of Computing the History Bound Julia Matsieva,Steven Kelk,Celine Scornavacca,Chris Whidden,Dan Gusfield IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2017, 14 (2), pp.404-417. ⟨10.1109/TCBB.2016.2527645⟩ Article dans une revue hal-02154874v1
DeCoSTAR: Reconstructing the ancestral organization of genes or genomes using reconciled phylogenies Wandrille Duchemin,Yoann Anselmetti,Murray Patterson,Yann Ponty,Sèverine Bérardet al. Genome Biology and Evolution, 2017, 9 (5), pp.1312-1319. ⟨10.1093/gbe/evx069⟩ Article dans une revue hal-01503766v2
Efficient FPT Algorithms for (Strict) Compatibility of Unrooted Phylogenetic Trees Julien Baste,Christophe Paul,Ignasi Sau,Celine Scornavacca Bulletin of Mathematical Biology, 2016, 79 (4), pp.920-938. ⟨10.1007/s11538-017-0260-y⟩ Article dans une revue lirmm-03113710v1
Kernelizations for the hybridization number problem on multiple nonbinary trees Leo van Iersel,Steven Kelk,Celine Scornavacca Journal of Computer and System Sciences, 2016, 82 (6), pp.1075-1089. ⟨10.1016/j.jcss.2016.03.006⟩ Article dans une revue hal-02154926v1
SylvX: a viewer for phylogenetic tree reconciliations François Chevenet,Jean-Philippe Doyon,Celine Scornavacca,Edwin Jacox,Emmanuelle Jousselinet al. Bioinformatics, 2016, 32 (4), pp.608-610. ⟨10.1093/bioinformatics/btv625⟩ Article dans une revue hal-01942605v1
ANISEED 2015: a digital framework for the comparative developmental biology of ascidians Matija Brozovic,Cyril Martin,Christelle Dantec,Delphine Dauga,Mickäel Mendezet al. Nucleic Acids Research, 2016, 44 (D1), pp.D808-D818. ⟨10.1093/nar/gkv966⟩ Article dans une revue hal-01295171v1
On the consistency of orthology relationships Mark Jones,Christophe Paul,Celine Scornavacca BMC Bioinformatics, 2016, 17 (S14), pp.11-14. ⟨10.1186/s12859-016-1267-3⟩ Article dans une revue lirmm-01481206v1
ecceTERA: Comprehensive gene tree-species tree reconciliation using parsimony Edwin Jacox,Cedric Chauve,Gergely J Szöllősi,Yann Ponty,Celine Scornavacca Bioinformatics, 2016, 32 (13), pp.2056-2058. ⟨10.1093/bioinformatics/btw105⟩ Article dans une revue hal-01276903v1
Fast and accurate branch lengths estimation for phylogenomic trees Manuel Binet,Olivier Gascuel,Celine Scornavacca,Emmanuel J.P. Douzery,Fabio Pardi BMC Bioinformatics, 2016, 17 (23), ⟨10.1186/s12859-015-0821-8⟩ Article dans une revue lirmm-01236485v1
Do branch lengths help to locate a tree in a phylogenetic network? Philippe Gambette,Leo van Iersel,Steven Kelk,Fabio Pardi,Celine Scornavacca Bulletin of Mathematical Biology, 2016, 78 (9), pp.1773-1795. ⟨10.1007/s11538-016-0199-4⟩ Article dans une revue hal-01372824v1
Inferring gene duplications, transfers and losses can be done in a discrete framework Vincent Ranwez,Celine Scornavacca,Jean-Philippe Doyon,Vincent Berry Journal of Mathematical Biology, 2016, 72 (7), pp.1811-1844. ⟨10.1007/s00285-015-0930-z⟩ Article dans une revue hal-01370854v1
Phylogenetic incongruence through the lens of Monadic Second Order logic Steven Kelk,Leo van Iersel,Celine Scornavacca,Mathias Weller Journal of Graph Algorithms and Applications, 2016, 20 (2), pp.189-215. ⟨10.7155/jgaa.00390⟩ Article dans une revue lirmm-01348425v1
Incomplete Lineage Sorting in Mammalian Phylogenomics Celine Scornavacca,Nicolas Galtier Systematic Biology, 2016, 66, pp.112 - 120. ⟨10.1093/sysbio/syw082⟩ Article dans une revue hal-01815360v1
Joint amalgamation of most parsimonious reconciled gene trees Celine Scornavacca,Edwin Jacox,Gergely Szöllősi Bioinformatics, 2015, 31 (6), pp.841-848. ⟨10.1093/bioinformatics/btu728⟩ Article dans une revue hal-02154935v1
Exploring the space of gene/species reconciliations with transfers Yao-Ban Chan,Vincent Ranwez,Celine Scornavacca Journal of Mathematical Biology, 2015, 71 (5), pp.1179-1209. ⟨10.1007/s00285-014-0851-2⟩ Article dans une revue hal-01268903v1
Efficient algorithms for reconciling gene trees and species networks via duplication and loss events Thu-Hien To,Celine Scornavacca BMC Genomics, 2015, 16 (S10), pp.4 - 7. ⟨10.1186/1471-2164-16-S10-S6⟩ Article dans une revue hal-02155241v1
A fast method for calculating reliable event supports in tree reconciliations via Pareto optimality Thu Hien To,Edwin Jacox,Vincent Ranwez,Celine Scornavacca BMC Bioinformatics, 2015, 16, pp.1-15. ⟨10.1186/s12859-015-0803-x⟩ Article dans une revue hal-01595105v1
On Computing the Maximum Parsimony Score of a Phylogenetic Network Mareike Fischer,Leo van Iersel,Steven Kelk,Celine Scornavacca SIAM Journal on Discrete Mathematics, 2015, 29 (1), pp.559-585. ⟨10.1137/140959948⟩ Article dans une revue hal-02154929v1
OrthoMaM v8: A Database of Orthologous Exons and Coding Sequences for Comparative Genomics in Mammals Emmanuel J.P. Douzery,Celine Scornavacca,Jonathan Romiguier,Khalid Belkhir,Nicolas Galtieret al. Molecular Biology and Evolution, 2014, 31 (7), pp.1923-1928. ⟨10.1093/molbev/msu132⟩ Article dans une revue hal-01133634v1
The agreement problem for unrooted phylogenetic trees is FPT Celine Scornavacca,Leo Van Iersel,Steven Kelk,David Bryant Journal of Graph Algorithms and Applications, 2014, 18 (3), pp.385-392. ⟨10.7155/jgaa.00327⟩ Article dans une revue hal-02154951v1
Constructing Minimal Phylogenetic Networks from Softwired Clusters is Fixed Parameter Tractable Steven Kelk,Celine Scornavacca Algorithmica, 2014, 68 (4), pp.886-915. ⟨10.1007/s00453-012-9708-5⟩ Article dans une revue hal-02154980v1
A practical approximation algorithm for solving massive instances of hybridization number for binary and nonbinary trees Leo Van Iersel,Steven Kelk,Nela Lekić,Celine Scornavacca BMC Bioinformatics, 2014, 15 (1), pp.296-302. ⟨10.1186/1471-2105-15-127⟩ Article dans une revue hal-02154944v1
Bio++ : Efficient Extensible Libraries and Tools for Computational Molecular Evolution Laurent Gueguen,Sylvain Gaillard,Bastien Boussau,Manolo Gouy,Mathieu Groussinet al. Molecular Biology and Evolution, 2013, 30 (8), pp.1745 - 1750. ⟨10.1093/molbev/mst097⟩ Article dans une revue hal-01209906v1
Support measures to estimate the reliability of evolutionary events predicted by reconciliation methods Thi-Hau Nguyen,Vincent Ranwez,Vincent Berry,Celine Scornavacca PLoS ONE, 2013, 8 (10), pp.e73667. ⟨10.1371/journal.pone.0073667⟩ Article dans une revue hal-01189798v1
Representing a set of reconciliations in a compact way Celine Scornavacca,Wojciech Paprotny,Vincent Berry,Vincent Ranwez Journal of Bioinformatics and Computational Biology, 2013, 11 (2), pp.1250025. ⟨10.1142/S0219720012500254⟩ Article dans une revue lirmm-00818801v1
Reconciliation-based detection of co-evolving gene families Yao-Ban Chan,Vincent Ranwez,Celine Scornavacca BMC Bioinformatics, 2013, 14, 15 p. ⟨10.1186/1471-2105-14-332⟩ Article dans une revue hal-01189789v1
Fast computation of minimum hybridization networks Benjamin Albrecht,Celine Scornavacca,Alberto Cenci,Daniel Huson Bioinformatics, 2012, 28 (2), pp.191-197. ⟨10.1093/bioinformatics/btr618⟩ Article dans une revue hal-02155006v1
A First Step Toward Computing All Hybridization Networks For Two Rooted Binary Phylogenetic Trees Celine Scornavacca,Simone Linz,Benjamin Albrecht Journal of Computational Biology, 2012, 19 (11), pp.1227-1242. ⟨10.1089/cmb.2012.0192⟩ Article dans une revue hal-02154992v1
Dendroscope 3: An Interactive Tool for Rooted Phylogenetic Trees and Networks Daniel Huson,Celine Scornavacca Systematic Biology, 2012, 61 (6), pp.1061-1067. ⟨10.1093/sysbio/sys062⟩ Article dans une revue hal-02154987v1
Cycle killer... qu'est-ce que c'est? On the comparative approximability of hybridization number and directed feedback vertex set Steven Kelk,Leo van Iersel,Nela Lekic,Simone Linz,Celine Scornavaccaet al. SIAM Journal on Discrete Mathematics, 2012, 26 (4), pp.1635-1656. ⟨10.1137/120864350⟩ Article dans une revue hal-00765019v1
Building species trees from larger parts of phylogenomic databases Celine Scornavacca,Vincent Berry,Vincent Ranwez Information and Computation, 2011, 209 (3), pp.590-605. ⟨10.1016/j.ic.2010.11.022⟩ Article dans une revue lirmm-00825050v1
A Survey of Combinatorial Methods for Phylogenetic Networks Daniel Huson,Celine Scornavacca Genome Biology and Evolution, 2011, 3, pp.23-35. ⟨10.1093/gbe/evq077⟩ Article dans une revue hal-02155011v1
Tanglegrams for rooted phylogenetic trees and networks Celine Scornavacca,Franziska Zickmann,Daniel Huson Bioinformatics, 2011, 27 (13), pp.i248-i256. ⟨10.1093/bioinformatics/btr210⟩ Article dans une revue hal-02155176v1
Multigenic phylogeny and analysis of tree incongruences in Triticeae (Poaceae) Juan-Sebastian Escobar,Celine Scornavacca,Alberto Cenci,Claire Guilhaumon,Sylvain Santoniet al. BMC Evolutionary Biology, 2011, 11 (181), 17 p. ⟨10.1186/1471-2148-11-181⟩ Article dans une revue hal-01499047v1
Exploring the Solution Space of Sorting by Reversals, with Experiments and an Application to Evolution Marília D.V. Braga,Marie-France Sagot,Celine Scornavacca,Eric Tannier IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2008, 5 (3), pp.348-356. ⟨10.1109/TCBB.2008.16⟩ Article dans une revue hal-00428206v1
PhySIC IST : cleaning source trees to infer more informative supertrees Celine Scornavacca,Vincent Berry,Vincent Lefort,Emmanuel J.P. Douzery,Vincent Ranwez BMC Bioinformatics, 2008, 9 (413), pp.1471-2105. ⟨10.1186/1471-2105-9-413⟩ Article dans une revue lirmm-00324069v1
PhySIC: A Veto Supertree Method with Desirable Properties Vincent Ranwez,Vincent Berry,Alexis Criscuolo,Pierre-Henri Fabre,Sylvain Guillemotet al. Systematic Biology, 2007, 56 (5), pp.798-817. ⟨10.1080/10635150701639754⟩ Article dans une revue lirmm-00194235v1

Communication dans un congrès (20)

Phylogenetic Network Diversity Parameterized by Reticulation Number and Beyond. Leo van Iersel,Mark Jones,Jannik Theodor Schestag,Celine Scornavacca,Mathias Weller The 22nd RECOMB-CG conference, Apr 2025, Seoul, South Korea. 24 p Communication dans un congrès hal-04987366v1
Average-Tree Phylogenetic Diversity of Networks Leo van Iersel,Jannik Theodor Schestag,Mark Jones,Celine Scornavacca,Mathias Weller 25th International Workshop on Algorithms in Bioinformatics, Aug 2025, Maryland, United States. ⟨10.4230/LIPIcs.WABI.2025.14⟩ Communication dans un congrès hal-05194249v1
Whole-genome duplication detection with phylogenomics reconciliation: a scalable approach. Reza Kalhor,Manuel Lafond,Celine Scornavacca RECOMB-CG, Apr 2025, Seoul, South Korea Communication dans un congrès hal-04987348v1
Classifying the Post-duplication Fate of Paralogous Genes Reza Kalhor,Guillaume Beslon,Manuel Lafond,Celine Scornavacca RECOMB-CG 2023 - 20th conference on Comparative Genomics, Apr 2023, Istanbul, Turkey. pp.1-18, ⟨10.1007/978-3-031-36911-7_1⟩ Communication dans un congrès hal-04239853v1
Treewidth-Based Algorithms for the Small Parsimony Problem on Networks Celine Scornavacca,Mathias Weller 21st International Workshop on Algorithms in Bioinformatics (WABI), Aug 2021, Chicago. Due to COVID-19, WABI 2021 will be held online., United States. pp.6:1, ⟨10.4230/LIPIcs.WABI.2021.6⟩ Communication dans un congrès hal-03287112v1
Scanning Phylogenetic Networks is NP-hard Vincent Berry,Celine Scornavacca,Mathias Weller SOFSEM 2020 - 46th International Conference on Current Trends in Theory and Practice of Informatics, Jan 2020, Limassol, Cyprus. pp.519-530, ⟨10.1007/978-3-030-38919-2_42⟩ Communication dans un congrès hal-02353161v3
On the Weighted Quartet Consensus problem Manuel Lafond,Celine Scornavacca CPM, 2018, Warsaw, Poland. pp.28:1-28:18, ⟨10.4230/LIPIcs.CPM.2017.28⟩ Communication dans un congrès hal-02155127v1
Reconciling Multiple Genes Trees via Segmental Duplications and Losses Riccardo Dondi,Manuel Lafond,Celine Scornavacca WABI, 2018, Helsinki, Finland. pp.5:1--5:16 Communication dans un congrès hal-02155103v1
Constructing a Consensus Phylogeny from a Leaf-Removal Distance Cédric Chauve,Mark Jones,Manuel Lafond,Celine Scornavacca,Mathias Weller SPIRE 2017, Sep 2017, Palermo, Italy. pp.129--143, ⟨10.1007/978-3-319-67428-5\_12⟩ Communication dans un congrès hal-02155266v1
Efficient FPT Algorithms for (Strict) Compatibility of Unrooted Phylogenetic Trees Julien Baste,Christophe Paul,Ignasi Sau,Celine Scornavacca AAIM: Algorithmic Aspects in Information and Management, Jul 2016, Bergamo, Italy. pp.53-64, ⟨10.1007/978-3-319-41168-2_5⟩ Communication dans un congrès lirmm-01481368v1
Phylogenomics unravels the complex reticulated history and shifts in mating systems in wheat relatives (Aegilops/Triticum genus) Celine Scornavacca,Sylvain Glémin,Jacques Dainat,Concetta Burgarella,Gautier Sarahet al. ALPHY 2016: Belgium-French meeting on Bioinformatics and Evolutionary Genomics March 17-18 2016, Institut de Biologie Physico-Chimique (IBPC). Paris, FRA. Muséum National d’Histoire Naturelle (MNHN), FRA., Mar 2016, Lille, France Communication dans un congrès hal-02793573v1
Reconstructible phylogenetic networks: do not distinguish the indistinguishable Fabio Pardi,Celine Scornavacca Evolution, Jun 2015, Guarujà, Brazil Communication dans un congrès lirmm-01237428v1
Fast and accurate branch length estimation for phylogenomic trees: ERaBLE (Evolutionary Rates and Branch Length Estimation) Manuel Binet,Olivier Gascuel,Celine Scornavacca,Emmanuel J.P. Douzery,Fabio Pardi Rencontres ALPHY - Génomique Evolutive, Bioinformatique, Alignement et Phylogénie, Mar 2015, Montpellier, France Communication dans un congrès lirmm-01237447v1
Fast and accurate branch lengths estimation for phylogenomic trees Manuel Binet,Olivier Gascuel,Celine Scornavacca,Emmanuel J.P. Douzery,Fabio Pardi Evolution, Jun 2015, Guarujà, Brazil Communication dans un congrès lirmm-01237507v1
Identifiability of phylogenetic networks Fabio Pardi,Celine Scornavacca MCEB: Mathematical and Computational Evolutionary Biology, Jun 2014, Hameau de l'Etoile, St Martin de Londres, France Communication dans un congrès lirmm-01237418v1
Reconstructible phylogenetic networks: no need to distinguish the indistinguishable Fabio Pardi,Celine Scornavacca Waiheke, Feb 2014, Waiheke, New Zealand Communication dans un congrès lirmm-01237408v1
A practical approximation algorithm for solving massive instances of hybridization number for binary and nonbinary trees Leo Van Iersel,Steven Kelk,Nela Lekić,Celine Scornavacca WABI, 2012, Ljubljana, Slovenia. pp.430-440 Communication dans un congrès hal-02155227v1
Un algorithme de parcimonie efficace pour la réconciliation d'arbres de gènes/espèces avec pertes, duplications et transferts Jean-Philippe Doyon,Celine Scornavacca,Gergely J. Szöllősi,Vincent Ranwez,Vincent Berry Journées Ouvertes en Biologie, Informatique et Mathématiques, Institut National d'Etudes Supérieures Agronomiques de Montpellier (Montpellier SupAgro). Montpellier, FRA., Sep 2010, Montpellier, France. pp.8 Communication dans un congrès lirmm-00833164v1
From Gene Trees to Species Trees Through a Supertree Approach Celine Scornavacca,Vincent Berry,Vincent Ranwez Language and Automata Theory and Applications : LATA 2009, Apr 2009, Tarragona, Spain. pp.10-19, ⟨10.1007/978-3-642-00982-2_60⟩ Communication dans un congrès lirmm-00367086v1
The solution space of sorting by reversals Marília D.V. Braga,Marie-France Sagot,Celine Scornavacca,Eric Tannier 3rd International Symposium on Bioinformatics Research and Applications (ISBRA 2007), May 2007, Atlanta, GA, United States. pp.293-304, ⟨10.1007/978-3-540-72031-7_27⟩ Communication dans un congrès istex hal-00434566v1

Poster de conférence (1)

On the inference of complex phylogenetic networks by Markov Chain Monte-Carlo Charles-Elie Rabier,Vincent Berry,Jean-Christophe Glaszmann,Fabio Pardi,Celine Scornavacca JOBIM 2020 - 20e Journées Ouvertes de Biologie, Informatique et Mathématique, Jun 2020, Montpellier, France. Poster de conférence lirmm-04027842v1

Ouvrages (2)

Phylogenetics in the Genomic Era Celine Scornavacca,Frédéric Delsuc,Nicolas Galtier Scornavacca, Celine; Delsuc, Frédéric; Galtier, Nicolas. No commercial publisher | Authors open access book, p.p. 1-568, 2020, 978-2-9575069-0-3 Ouvrages hal-02535070v3
Phylogenetic Networks Daniel Huson,Regula Rupp,Celine Scornavacca Cambridge University Press, 2010 Ouvrages hal-02155099v1

Chapitre d'ouvrage (2)

Reconciling Gene trees with Species Trees Bastien Boussau,Celine Scornavacca Scornavacca, Celine; Delsuc, Frédéric; Galtier, Nicolas. Phylogenetics in the Genomic Era, No commercial publisher | Authors open access book, pp.3.2:1--3.2:23, 2020 Chapitre d'ouvrage hal-02535529v1
An Efficient Algorithm for Gene/Species Trees Parsimonious Reconciliation with Losses, Duplications and Transfers Jean-Philippe Doyon,Celine Scornavacca,Yu Gorbunov,Gergely J. Szöllősi,Vincent Ranwezet al. Eric Tannier. Comparative Genomics. RECOMB-CG 2010, LNCS (6398), Springer Berlin Heidelberg, pp.93-108, 2010, 978-3-642-16181-0. ⟨10.1007/978-3-642-16181-0_9⟩ Chapitre d'ouvrage lirmm-00818889v1

Autre publication scientifique (3)

Comparing reconciled gene trees in linear time Celine Scornavacca 2020, pp.100002. ⟨10.24072/pci.mcb.100002⟩ Autre publication scientifique hal-03087729v1
A bird’s white-eye view on neosex chromosome evolution Thibault Leroy,Yoann Anselmetti,Marie-Ka Tilak,Sèverine Bérard,Laura Csukonyiet al. 2019, ⟨10.1101/505610⟩ Autre publication scientifique hal-02155307v1
MaxTiC: Fast Ranking Of A Phylogenetic Tree By Maximum Time Consistency With Lateral Gene Transfers Cédric Chauve,Akbar A Rafiey,Adrian A Davin,Celine Scornavacca,Philippe Veberet al. 2017, ⟨10.1101/127548⟩ Autre publication scientifique hal-01532738v3

Pré-publication, Document de travail (4)

Time to publish ethically: DAFNEE, a database of academia-friendly journals in ecology and evolutionary biology. Nicolas Galtier,Khalid Belkhir,Pierre-Olivier Antoine,Christine Bibal,Christophe Boëteet al. 2025 Pré-publication, Document de travail hal-05157188v1
Maximizing Network Phylogenetic Diversity Leo van Iersel,Mark Jones,Jannik Theodor Schestag,Celine Scornavacca,Mathias Weller 2025 Pré-publication, Document de travail hal-04895822v1
Quel avenir pour les trottinettes électriques ? Frédéric Héran,Celine Scornavacca 2024 Pré-publication, Document de travail (preprint/prepublication) hal-04811155v1
Cutting an alignment with Ockham's razor Mark Jones,Philippe Gambette,Leo van Iersel,Remie Janssen,Steven Kelket al. 2019 Pré-publication, Document de travail lirmm-02413025v1

Rapport (1)

SARS-CoV-2 Through the Lens of Computational Biology: How bioinformatics is playing a key role in the study of the virus and its origins Samuel Alizon,Frédéric Cazals,Stéphane Guindon,Claire Lemaitre,Tristan Mary-Huardet al. [Research Report] CNRS. 2021, pp.1-35 Rapport (rapport de recherche) hal-03170023v1

Thèse (1)

Supertree methods for phylogenomics Celine Scornavacca Bioinformatics [q-bio.QM]. Université Montpellier II - Sciences et Techniques du Languedoc, 2009. English. ⟨NNT : ⟩ Thèse tel-00842893v1