Céline Vandecasteele

Publications

Communication dans un congrès (15)

Modelling genetic and epigenetic selection signatures from pool sequencing. Sonia E Eynard,Kossi-Julien Kowou,Cécile Donnadieu,Loïc Flatres-Grall,Carole Iampietroet al. Environmental and Agronomical Genomics Symposium, france génomique; greenomics, Feb 2026, Paris, France Communication dans un congrès hal-05538015v1
Updates for Goat SNP Chips Guilherme Borba Neumann,Andrea Eggen,Andrea Talenti,Anna S Grulikowski,Antonia Noceet al. The Plant and Animal Genome Conference (PAG), Jan 2025, San Diego, United States Communication dans un congrès hal-05242474v1
Modulation environnementale du méthylome d’un pathogène d’huître, Vibrio aestuarianus Elyna Bouchereau,L. Legrand,J. Brillard,Céline Cosseau,Charlotte Corporeauet al. 8e Rencontres Bioinformatiques, IFREMER, Sep 2025, Sète, France Communication dans un congrès hal-05467034v1
Deciphering the methylome of a bacterial oyster pathogen, Vibrio aestuarianus Elyna Bouchereau,L. Legrand,Julien Brillard,Celine Cosseau,Charlotte Corporeauet al. EPIMAR 2025, May 2025, Barcelona, Spain Communication dans un congrès hal-05090442v1
Avancées et perspectives ouvertes en épigénétique animale grâce à SeqOccIn. Frédérique Pitel,Céline Vandecasteele,Julie Demars Colloque INRAE Genomics 2022, May 2022, Orléans, France Communication dans un congrès hal-04129124v1
Transgenerational epigenetics in quail Chloé Cerutti,Sophie Leroux,Paul Terzian,Joanna Lledo,David Gourichonet al. Genotoul Biostat Bioinfo Day, Dec 2022, Castanet-Tolosan, France Communication dans un congrès hal-03957296v1
Targeting the pig imprintome Jean-Noël Hubert,Nathalie Iannuccelli,Cédric Cabau,Rémy-Félix Serre,Céline Vandecasteeleet al. Advances in Genome Biology and Technology Agriculture (AGBT-Ag), Apr 2022, San Diego, United States Communication dans un congrès hal-04099166v1
In search of the honey bee centromeres: regions with tandem repeats high at content and low recombination rates Alain Vignal,Sonia E Eynard,Christophe Klopp,Bertrand Servin,Kamila Canale-Tabetet al. 9th European Congress of Apidology, Sep 2022, Belgrade, Serbia Communication dans un congrès hal-03855207v1
Contribution of DNA methylation to host adaptation in the plant pathogen Ralstonia solanacearum Alice Guidot,Rekha Gopalan-Nair,Ludovic Legrand,Stéphane Genin,Xavier Barletet al. GDR 3E / REacTION Epigénétique en Ecologie, Evolution, Agronomie et Environnement, Oct 2021, Montpellier, France Communication dans un congrès hal-04187503v1
Analysis of a complex QTL region controlling the broad-spectrum resistance to &lt;em&gt;Phytophthora capsici&lt;/em&gt; root rot by comparative mapping and association study in pepper germplasm Véronique Lefebvre,Melissa Cantet,Céline Vandecasteele,Sonia S. Vautrin,Jean-Paul Bouchetet al. 15. Eucarpia Meeting on Genetics and Breeding of Capsicum and Eggplant, Sep 2013, Torino, Italy Communication dans un congrès hal-02750004v1
Identifying a candidate gene for the broad-spectrum resistance qtl to &lt;em&gt;Phytophthora&lt;/em&gt; root rot and blight in pepper Véronique Lefebvre,Céline Vandecasteele,Melissa Cantet,Stéphane Mallard,Sonia S. Vautrinet al. 9. Solanaceae Conference (SOL2012), Aug 2012, Neuchâtel, Switzerland Communication dans un congrès hal-02746226v1
The role of oligosaccharides in seed vigour revisited using the legume model Medicago truncatula Julia Buitink,Céline Vandecasteele,Béatrice Teulat,Marie-Christine Morère-Le Paven,Olivier Leprinceet al. 10th ISSS Conference on Seed Biology, 2011, Bahia, Brazil Communication dans un congrès hal-03339450v1
Exploiting post-genomics resources in model species and genome conservation between model species and legume crops to accelerate seed biology discoveries in crops Hélène Zuber,Christine Le Signor,Gregoire G. Aubert,Amandine A. Bordat,Vincent V. Savoiset al. 5. International Food Legumes Reserch Conference (IFLRC V) and 7. European Conference on Grain Legumes (AEPVII) ; Legumes for Global Health Legume Crops and Products for Food, Feed and Environmental Benefits, Apr 2010, Antalya, Turkey Communication dans un congrès hal-02754795v1
Génétique et post-génomique chez la légumineuse modèle M. truncatula pour disséquer le déterminisme moléculaire de la composition protéique des graines de légumineuses Karine Gallardo Guerrero,Amandine A. Bordat,Christine Le Signor,Gregoire G. Aubert,Delphine Aimeet al. 2.colloque national du réseau français de biologie des graines., Jun 2009, Paris, France Communication dans un congrès hal-02758473v1
Déterminisme génétique de la qualité physiologique des graines chez &lt;em&gt;Médicago truncatula&lt;/em&gt; Céline Vandecasteele,Béatrice Teulat-Merah,Karine Gallardo,Julia Buitink 2ème colloque national du réseau français de biologie des graines, Jun 2009, Paris, France. 55 p Communication dans un congrès hal-02752450v1

Article dans une revue (28)

Gain and loss of gene function shaped the nickel hyperaccumulation trait in Noccaea caerulescens Célestine Belloeil,Vanesa Sanchez Garcia de la Torre,Rubén Contreras-Aguilera,Hendrik Küpper,Ophélie Courtinet al. The Plant cell, 2025, 38 (1), ⟨10.1093/plcell/koaf281⟩ Article dans une revue hal-05264431v1
Structure-dependent degradation of milk oligosaccharides by newly isolated intestinal commensal bacterial strains from suckling piglets and rabbits Mathilde Rumeau,Sead Chadi,Frederic Pepke,Martin Beaumont,Cláudia M. Vicenteet al. BMC Microbiology, 2025, 25 (1), pp.513. ⟨10.1186/s12866-025-04205-y⟩ Article dans une revue hal-04666812v2
Pig and quail CpG methylation datasets from short and long read sequencing technologies Paul Terzian,Céline Vandecasteele,Joanna Lledo,Rémy-Félix Serre,Jules Sabbanet al. Scientific Data , 2025, 12 (1), pp.556. ⟨10.1038/s41597-025-04769-4⟩ Article dans une revue hal-05039144v1
Low Mutation Rate and Atypical Mutation Spectrum in Prasinoderma coloniale : Insights From an Early Diverging Green Lineage Lisa Mettrop,Anna Lipzen,Celine Vandecasteele,Camille Eché,Anaïs Labécotet al. Genome Biology and Evolution, 2025, 17 (3), pp.evaf026. ⟨10.1093/gbe/evaf026⟩ Article dans une revue hal-05050324v1
Changes in DNA methylation contribute to rapid adaptation in bacterial plant pathogen evolution Rekha Gopalan-Nair,Aurore Coissac,Ludovic Legrand,Céline Lopez-Roques,Yann Pécrixet al. PLoS Biology, 2024, 22 (9), pp.e3002792. ⟨10.1371/journal.pbio.3002792⟩ Article dans une revue hal-04720885v2
Detection of DNA methylation signatures through the lens of genomic imprinting Jean-Noël Hubert,Nathalie Iannuccelli,Cédric Cabau,Eva Jacomet,Yvon Billonet al. Scientific Reports, 2024, 14 (1), pp.1694. ⟨10.1038/s41598-024-52114-3⟩ Article dans une revue hal-04453257v1
Thermospira aquatica gen. nov., sp. nov., a novel thermophilic spirochete isolated from a Tunisian hot spring, and description of the novel family Thermospiraceae Zouhaier Ben Ali Gam,Abdoulaye Thioye,Jean-Luc Cayol,Anne Postec,Manon Bartoli-Josephet al. International Journal of Systematic and Evolutionary Microbiology, 2023, 73 (1), ⟨10.1099/ijsem.0.005690⟩ Article dans une revue hal-04417428v1
Comparative Genome Analysis of Enterococcus cecorum Reveals Intercontinental Spread of a Lineage of Clinical Poultry Isolates Jeanne Laurentie,Valentin Loux,Christelle Hennequet-Antier,Emilie Chambellon,Julien Deschampset al. MSphere, 2023, 8 (2), pp.e0049522. ⟨10.1128/msphere.00495-22⟩ Article dans une revue hal-04004063v1
Genome Sequence of the Streptomyces Strain AgN23 Revealed Expansion and Acquisition of Gene Repertoires Potentially Involved in Biocontrol Activity and Rhizosphere Colonization Damien D. Gayrard,Clément Nicolle,Marine Veyssière,Kévin Adam,Yves Martinezet al. PhytoFrontiers, 2023, ⟨10.1094/PHYTOFR-11-22-0131-R⟩ Article dans une revue hal-04244412v1
The black honey bee genome: insights on specific structural elements and a first step towards pan-genomes Sonia Eynard,Christophe Klopp,Kamila Canale-Tabet,William Marande,Céline Vandecasteeleet al. Genetics Selection Evolution, 2023, 56 (1), pp.51. ⟨10.1101/2023.12.06.570386⟩ Article dans une revue hal-04473386v2
Marinitoga aeolica sp. nov., a novel thermophilic anaerobic heterotroph isolated from a shallow hydrothermal field of Panarea Island in the Aeolian archipelago, Italy Anne Postec,Grégoire Galès,Anne-Hélène Prime,Manon Bartoli,Roy E Priceet al. International Journal of Systematic and Evolutionary Microbiology, 2023, 73 (11), pp.006186. ⟨10.1099/ijsem.0.006186⟩ Article dans une revue hal-04338849v1
Complete Genome Sequence of Stenotrophomonas maltophilia 1800, a New Bacterial Strain with Potential for Bioremediation of Oil-Contaminated Environments Annela Semai,Frédéric Plewniak,Joanna Lledo,Gwenolah Annonay,Céline Vandecasteeleet al. Microbiology Resource Announcements, 2022, 11 (2), ⟨10.1128/mra.01116-21⟩ Article dans une revue hal-04289884v1
Impacts of Mycoplasma agalactiae restriction-modification systems on pan-epigenome dynamics and genome plasticity Emilie Dordet-Frisoni,Céline Vandecasteele,Rachel Contarin,Eveline Sagné,Eric Baranowskiet al. Microbial Genomics, 2022, 8 (5), pp.000829. ⟨10.1099/mgen.0.000829⟩ Article dans une revue hal-03716470v2
Methanobacterium alkalithermotolerans sp. nov., a novel alkaliphilic and hydrogen-utilizing methanogen isolated from an alkaline geothermal spring (La Crouen, New Caledonia) Nan Mei,Anne Postec,Manon Bartoli,Céline Vandecasteele,Laura Wilset al. International Journal of Systematic and Evolutionary Microbiology, 2022, 72 (10), ⟨10.1099/ijsem.0.005554⟩ Article dans une revue hal-04114150v1
Dyes Biodegradation in the Presence of Hexavalent Chromium by Streptomyces sp. KY75: a Novel Heavy Metal Resistant Strain Isolated in Algeria Salima Tighidet,Frédéric Plewniak,Amalia Sayeh,Lisa Gil,Céline Vandecasteeleet al. Water, Air, and Soil Pollution, 2022, 233 (7), pp.285. ⟨10.1007/s11270-022-05756-w⟩ Article dans une revue hal-04289845v1
Characterisation of hydrocarbon degradation, biosurfactant production, and biofilm formation in Serratia sp. Tan611: a new strain isolated from industrially contaminated environment in Algeria Annela Semai,Frederic Plewniak,Armelle Charrié-Duhaut,Amalia Sayeh,Lisa Gilet al. Antonie van Leeuwenhoek, 2021, 114 (4), pp.411-424. ⟨10.1007/s10482-021-01527-5⟩ Article dans une revue hal-03218885v1
Convergent Rewiring of the Virulence Regulatory Network Promotes Adaptation of Ralstonia solanacearum on Resistant Tomato Rekha Gopalan-Nair,Marie-Françoise Jardinaud,Ludovic Legrand,David Landry,Xavier Barletet al. Molecular Biology and Evolution, 2021, 38 (5), pp.1792-1808. ⟨10.1093/molbev/msaa320⟩ Article dans une revue hal-03328995v1
Alkalicella caledoniensis gen. nov., sp. nov., a novel alkaliphilic anaerobic bacterium isolated from ‘La Crouen’ alkaline thermal spring, New Caledonia Marianne Quéméneur,Gaël Erauso,Manon Bartoli,Céline Vandecasteele,Laura Wilset al. International Journal of Systematic and Evolutionary Microbiology, 2021, 71 (5), pp.004810. ⟨10.1099/ijsem.0.004810⟩ Article dans une revue hal-03231234v1
Complete Genome Sequences of Four Atrazine-Degrading Bacterial Strains, Pseudomonas sp. Strain ADPe, Arthrobacter sp. Strain TES, Variovorax sp. Strain 38R, and Chelatobacter sp. Strain SR38 Loren Billet,Marion Devers-Lamrani,Rémy-Félix Serre,Emmanuel Julia,Céline Vandecasteeleet al. Microbiology Resource Announcements, 2021, 10 (1), art. e01080-20 (3p.). ⟨10.1128/mra.01080-20⟩ Article dans une revue hal-03271166v1
Complete Genome Sequence of the Type Strain Pectobacterium punjabense SS95, Isolated from a Potato Plant with Blackleg Symptoms Sohaib Sarfraz,Saïd Oulghazi,Jeremy Cigna,Shahbaz Talib Sahi,Kashif Riazet al. Microbiology Resource Announcements, 2020, 9 (32), ⟨10.1128/MRA.00420-20⟩ Article dans une revue hal-02928171v1
Complete Genome Sequence of Microbacterium sp. Strain Nx66, Isolated from Waters Contaminated with Petrochemicals in El Saf-Saf Valley, Algeria Nardjess Chéraiti,Frédéric Plewniak,Salima Tighidet,Amalia Sayeh,Lisa Gilet al. Microbiology Resource Announcements, 2020, 9 (47), ⟨10.1128/MRA.01130-20⟩ Article dans une revue hal-03257259v1
Diversity of Pectobacteriaceae Species in Potato Growing Regions in Northern Morocco Saïd Oulghazi,Mohieddine Moumni,Slimane Khayi,Kévin Robic,Sohaib Sarfrazet al. Microorganisms, 2020, 8 (6), pp.895. ⟨10.3390/microorganisms8060895⟩ Article dans une revue hal-02877933v1
Hydrostatic Pressure Helps to Cultivate an Original Anaerobic Bacterium From the Atlantis Massif Subseafloor (IODP Expedition 357): Petrocella atlantisensis gen. nov. sp. nov. Marianne Quéméneur,Gaël Erauso,Eléonore E Frouin,Emna Zeghal,Céline Vandecasteeleet al. Frontiers in Microbiology, 2019, 10, pp.1497. ⟨10.3389/fmicb.2019.01497⟩ Article dans une revue hal-02297216v1
The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution Hélène Badouin,Jerome Gouzy,Christopher Grassa,Florent Murat,S Evan Statonet al. Nature, 2017, 546 (7656), pp.148-152. ⟨10.1038/nature22380⟩ Article dans une revue hal-01603287v1
Comparative Analysis of Ralstonia solanacearum Methylomes I. Erill,M. Puigvert,Ludovic Legrand,R. Guarischi-Sousa,Céline Vandecasteeleet al. Frontiers in Plant Science, 2017, 8, pp.1-16. ⟨10.3389/fpls.2017.00504⟩ Article dans une revue hal-01602628v1
ABI5 Is a Regulator of Seed Maturation and Longevity in Legumes Julia Zinsmeister,David Lalanne,Emmanuel Terrasson,Emilie Chatelain,Céline Vandecasteeleet al. The Plant cell, 2016, 28 (11), pp.2735-2754. ⟨10.1105/tpc.16.00470⟩ Article dans une revue hal-01602822v1
Comparaison des méthodes de détection des mosaïques des blés (Bymovirus et Furovirus) par marquage moléculaire et par détection sérologique Valerie Cadot,Michel Bonnefoy,Mathieu Rolland,Delphine Hourcade,Céline Androet al. Innovations Agronomiques, 2014, 35, pp.107-117. ⟨10.17180/9kvd-5a10⟩ Article dans une revue hal-04522243v1
Characterization of a dual-affinity nitrate transporter MtNRT1.3 in the model legume Medicago truncatula. Marie-Christine Morère-Le Paven,Laure Viau,Alain Hamon,Céline Vandecasteele,Anthoni Pellizzaroet al. Journal of Experimental Botany, 2011, 62 (15), pp.5595-605. ⟨10.1093/jxb/err243⟩ Article dans une revue hal-00662573v1

Poster de conférence (18)

TAPS for Multimodal Epigenomic Profiling in Livestock A Comparison with ONT, WGBS, and EM-Seq Céline Vandecasteele,Julie Demars,Sophie Leroux,Nathalie Iannuccelli,Carole Iampietroet al. Plant and animal genome conference 32, Jan 2025, San Diego, United States. 2025 Poster de conférence hal-04911060v1
Modelling genetic and epigenetic selection signatures from pool sequencing Sonia E Eynard,Kossi-Julien Kowou,Cécile Donnadieu,Loïc Flatres-Grall,Carole Iampietroet al. Epigenetic inheritance symposium, Aug 2025, Zurich, Switzerland Poster de conférence hal-05208140v1
Genetic and epigenetic selection signatures from pool sequencing experiment Sonia E Eynard,Kossi-Julien Kowou,Cécile Donnadieu,Loïc Flatres-Grall,Carole Iampietroet al. Biology of genomes, May 2025, Cold Spring Harbor (NY), United States Poster de conférence hal-05117238v1
Modelling genetic and epigenetic selection signatures from pool sequencing Sonia E Eynard,Kossi-Julien Kowou,Cécile Donnadieu,Loïc Flatres-Grall,Carole Iampietroet al. Epiphase, Nov 2025, Toulouse, France Poster de conférence hal-05538035v1
Benchmarking of sequencing technologies for CpG methylation detection: applications to quail and pig Céline Vandecasteele,Paul Terzian,Joanna Lledo,Rémy-Félix Serre,Jules Sabbanet al. London Calling 2024, May 2024, Londres, United Kingdom Poster de conférence hal-04638952v1
Whole genome sequencing and epigenotyping for multiple generations of selection using Oxford Nanopore Technology Sonia E Eynard,Cécile Donnadieu,Loïc Flatres-Grall,Carole Iampietro,Sandrine Lagarrigueet al. Environmental and Agronomical Genomics Symposium, Feb 2024, Toulouse, France. , pp.118, Book of abstracts Poster de conférence hal-04473354v1
Whole genome sequencing and epigenotyping for multiple generations of selection using Oxford Nanopore Technology Sonia E Eynard,Cécile Donnadieu,Loïc Flatres-Grall,Carole Iampietro,Sandrine Lagarrigueet al. International congress in Ecology and Evolution, Oct 2024, Lyon, France Poster de conférence hal-04796434v1
Transgenerational epigenetics in quail: targeting DNA methylation patterns to address the interplay between genetic and epigenetic mechanisms Stacy Rousse,Chloé Cerutti,Sophie Leroux,Paul Terzian,Joanna Lledoet al. Ecology and Evolution, Oct 2024, Lyon, France Poster de conférence hal-04770637v1
Genomic imprinting in livestock species -Challenges of long reads sequencing from ONT Julie Demars,Jean-Noël Hubert,Nathalie Iannuccelli,Sophie Leroux,Céline Vandecasteeleet al. Advances in Genome Biology and Technology (AGBT), Apr 2024, Phoenix, United States. 2024 Poster de conférence hal-04566188v1
A methyl-seq tool to capture genomic imprinted loci Jean-Noël Hubert,Nathalie Iannuccelli,Cédric Cabau,Eva Jacomet,Yvon Billonet al. Genomic Imprinting - from Biology to Disease, Mar 2023, Hinxton, United Kingdom Poster de conférence hal-04198129v1
Comparison of the PacBio 2.0 and 3.0 kits for full length mRNA sequencing in multiplex Marine Sallaberry,Eden Darnige,Lucien Hoffbeck,Sandra Fourre,Mathis Pochonet al. Assemblée Générale France Génomique, Jun 2023, Paris, France Poster de conférence hal-04150252v1
L’évolution de l’épigénétique au cours de plusieurs générations de sélection Sonia E Eynard,Cécile Donnadieu,Loïc Flatres-Grall,Carole Iampietro,Sandrine Lagarrigueet al. EpiPhase, Oct 2023, Jouy en Josas, France Poster de conférence hal-04796446v1
Transgenerational epigenetics in quail: whole genome DNA methylation analysis Chloé Cerutti,Sophie Leroux,Paul Terzian,Joanna Lledo,David Gourichonet al. Epigenetic Inheritance: Impact for Biology and Society, Aug 2023, Zurich, Switzerland Poster de conférence hal-04212971v1
The evolution of epigenetics across multiple generations Sonia E Eynard,Cécile Donnadieu,Loïc Flatres-Grall,Carole Iampietro,Sandrine Lagarrigueet al. Epigenetic inheritance symposium, Aug 2023, Zurich, Switzerland. 2023 Poster de conférence hal-04195749v1
Transgenerational epigenetics in quail Chloé Cerutti,Sophie Leroux,Paul Terzian,Joanna Lledo,David Gourichonet al. ECCB2022 - 21st European Conference on Computational Biology, Sep 2022, Sitges, Spain Poster de conférence hal-03935584v1
Preliminary results from Nanopore Q20+ sequencing Claire Kuchly,Jules Sabban,Eden Darnige,Camille Eché,Amandine Suinet al. JOBIM 2022 : Journées Ouvertes Biologie Informatique Mathématiques, Jul 2022, Rennes, France. 2022 Poster de conférence hal-03719401v1
Vers une carte de l'imprintome porcin Jean-Noël Hubert,Nathalie Iannuccelli,Cédric Cabau,Rémy-Félix Serre,Céline Vandecasteeleet al. Journées Scientifiques du Département de Génétique Animale, Sep 2022, Bordeaux, France Poster de conférence hal-04099355v1
A Long Read project to find optimal technologic combinations for genome assembly and variability, epigenetic marks detection and metagenomic analysis Carole Iampietro,Camille Eché,Adrien Castinel,Rémy-Félix Serre,Christophe Kloppet al. PAG XXVIII, Plant and Animal Genome, Jan 2020, San Diego, United States. 2020 Poster de conférence hal-02947690v1

Pré-publication, Document de travail (4)

A methyl-seq tool to capture genomic imprinted loci Jean-Noël Hubert,Nathalie Iannuccelli,Cédric Cabau,Eva Jacomet,Yvon Billonet al. 2023 Pré-publication, Document de travail hal-04099373v1
An optimized protocol to detect high-throughput DNA methylation from custom targeted sequences Nathalie Iannuccelli,Rémy-Félix Serre,Céline Vandecasteele,Alonzo Lee,Yann Merletet al. 2023 Pré-publication, Document de travail hal-04214468v1
Evidence for increased fitness of a plant pathogen conferred by epigenetic variation Rekha Gopalan-Nair,Aurore Coissac,Ludovic Legrand,Céline Lopez-Roques,Yann Pécrixet al. 2023 Pré-publication, Document de travail hal-04203349v1
Comparative genome analysis of Enterococcus cecorum reveals intercontinental spread of a lineage of clinical poultry isolates Jeanne Laurentie,Valentin Loux,Christelle Hennequet-Antier,Emilie Chambellon,Julien Deschampset al. 2023 Pré-publication, Document de travail hal-04281314v1