Cervin Guyomar

Publications

Article dans une revue (13)

Guiding eQTL mapping and genomic prediction of gene expression in three pig breeds with tissue-specific epigenetic annotations from early development Fanny Mollandin,Hervé Acloque,Maria Ballester,Marco Bink,Mario Caluset al. Genomics, 2026, 118 (1), pp.111158. ⟨10.1016/j.ygeno.2025.111158⟩ Article dans une revue hal-05511224v1
Empowering bioinformatics communities with Nextflow and nf-core Björn E Langer,Andreia Amaral,Marie-Odile Baudement,Franziska Bonath,Mathieu Charleset al. Genome Biology, 2025, 26 (1), pp.228. ⟨10.1186/s13059-025-03673-9⟩ Article dans une revue (article de synthèse) hal-05224445v1
Parent-of-origin regulation by maternal auts2 shapes neurodevelopment and behavior in fish Antoine Clement,Constance Merdrignac,Sergi Roig Puiggros,Dorine Sévère,Aurélien Brionneet al. Genome Biology, 2025, 26 (1), pp.125. ⟨10.1186/s13059-025-03600-y⟩ Article dans une revue hal-05079847v1
Yeast extract improves growth in rainbow trout (Oncorhynchus mykiss) fed a fishmeal-free diet and modulates the hepatic and distal intestine transcriptomic profile Laura Frohn,Diogo Peixoto,Cervin Guyomar,Carla Teixeira,Frédéric Terrieret al. Aquaculture, 2024, 579, ⟨10.1016/j.aquaculture.2023.740226⟩ Article dans une revue hal-04259805v1
Looking for a needle in a haystack: de novo phenotypic target identification reveals Hippo pathway-mediated miR-202 regulation of egg production Sarah JANATI IDRISSI,Mariana Roza de Abreu,Cervin Guyomar,Fernanda de Mello,Thuy Thao Vi Nguyenet al. Nucleic Acids Research, 2024, 52 (2), pp.738-754. ⟨10.1093/nar/gkad1154⟩ Article dans une revue hal-04501492v1
TAGADA: a scalable pipeline to improve genome annotations with RNA-seq data Cyril Kurylo,Cervin Guyomar,Sylvain Foissac,Sarah Djebali NAR Genomics and Bioinformatics, 2023, 5 (4), pp.lqad089. ⟨10.1093/nargab/lqad089⟩ Article dans une revue hal-04278708v1
Mechanisms of Isothiocyanate Detoxification in Larvae of Two Belowground Herbivores, Delia radicum and D. floralis (Diptera: Anthomyiidae) Rebekka Sontowski,Cervin Guyomar,Yvonne Poeschl,Alexander Weinhold,Nicole M van Damet al. Frontiers in Physiology, 2022, 13, 17 p. ⟨10.3389/fphys.2022.874527⟩ Article dans une revue hal-03719433v1
A high-quality functional genome assembly of Delia radicum L. (Diptera: Anthomyiidae) annotated from egg to adult Rebekka Sontowski,Yvonne Poeschl,Yu Okamura,Heiko Vogel,Cervin Guyomaret al. Molecular Ecology Resources, 2022, 22 (5), pp.1954-1971. ⟨10.1111/1755-0998.13594⟩ Article dans une revue hal-03713223v1
FishmiRNA: An evolutionarily supported microRNA annotation and expression database for ray-finned fishes Thomas Desvignes,Philippe Bardou,Jérôme Montfort,Jason Sydes,Cervin Guyomaret al. Molecular Biology and Evolution, 2022, 39 (2), pp.msac004. ⟨10.1093/molbev/msac004⟩ Article dans une revue hal-03528022v1
The first draft genome of feather grasses using SMRT sequencing and its implications in molecular studies of Stipa Evgenii Baiakhmetov,Cervin Guyomar,Ekaterina Shelest,Marcin Nobis,Polina D Gudkova Scientific Reports, 2021, 11 (1), pp.15345. ⟨10.1038/s41598-021-94068-w⟩ Article dans une revue hal-03336697v1
Circulating miRNA repertoire as a biomarker of metabolic and reproductive states in rainbow trout Emilie Cardona,Cervin Guyomar,Thomas Desvignes,Jérôme Montfort,Samia Guendouzet al. BMC Biology, 2021, 19 (1), pp.235. ⟨10.1186/s12915-021-01163-5⟩ Article dans une revue hal-03436712v1
MinYS: mine your symbiont by targeted genome assembly in symbiotic communities Cervin Guyomar,Wesley Delage,Fabrice Legeai,Christophe Mougel,Jean-Christophe Simonet al. NAR Genomics and Bioinformatics, 2020, 2 (3), pp.1-11. ⟨10.1093/nargab/lqaa047⟩ Article dans une revue hal-02891885v1
Multi-scale characterization of symbiont diversity in the pea aphid complex through metagenomic approaches Cervin Guyomar,Fabrice Legeai,Emmanuelle Jousselin,Christophe Mougel,Claire Lemaitreet al. Microbiome, 2018, 6 (1), pp.1-21. ⟨10.1186/s40168-018-0562-9⟩ Article dans une revue hal-01926402v1

Poster de conférence (6)

GWASpipe: a Nexflow pipeline for GWAS analyses incorporating quality control Sophia Marguerit,Marc Galland,Cervin Guyomar,Jacques Lagnel,Fabrice Legeaiet al. JOBIM, événement annuel de la bioinformatique et de la biostatistique francophone, Jul 2025, Bordeaux, France. ⟨10.15454/1.5572369328961167E12⟩ Poster de conférence hal-05265454v1
Evaluating low-pass genotyping strategies using PARSEC, a scalable and modular Nextflow pipeline Cervin Guyomar,Denis Milan,Christophe Klopp,Cécile Donnadieu,Bertrand Servinet al. Intelligent Systems for Molecular Biology/European Conference on Computational Biology, Jul 2025, Liverpool, United Kingdom Poster de conférence hal-05163312v1
Knowledge graph based integration of transcriptome sequencing data to explore miRNA mediated regulation Océane Carpentier,Vincent Rocher,Sarah Djebali,Cervin Guyomar Journées ouvertes en biologie, informatique, et mathématiques 2024, Jun 2024, Toulouse, France Poster de conférence hal-04746334v1
Improving genome annotations with RNA-seq data: a scalable and reproducible workflow for Transcripts And Genes Assembly, Deconvolution, Analysis (TAGADA). Cyril Kurylo,Cervin Guyomar,Sarah Djebali,Sylvain Foissac ECCB 2022, Sep 2022, Sitges, France Poster de conférence hal-03936482v1
Reference guided genome assembly in metagenomic samples Cervin Guyomar,Wesley Delage,Fabrice Legeai,Christophe Mougel,Jean-Christophe Simonet al. RECOMB 2018 - 22nd International Conference on Research in Computational Molecular Biology, Apr 2018, Paris, France. pp.1 Poster de conférence hal-01934823v1
Multi-scale characterization of symbiont diversity in the pea aphid complex through metagenomic approaches Cervin Guyomar,Fabrice Legeai,Christophe Mougel,Claire Lemaitre,Jean-Christophe Simon JOBIM 2017 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2017, Lille, France Poster de conférence hal-01638884v1

Communication dans un congrès (10)

Hippo mediated regulation of gonad function by miR-202 Sarah JANATI IDRISSI,Mariana Roza de Abreu,Cervin Guyomar,Sylwia Judycka,Thaovi Nguyenet al. Colloque différenciation et fonction des gonades, Mar 2025, Paris, France Communication dans un congrès hal-05084613v1
Empowering Bioinformatics Communities with nf-core: The success of an open-source bioinformatics ecosystem Björn E Langer,Andreia Amaral,Marie-Odile Baudement,Franziska Bonath,Mathieu Charleset al. Intelligent Systems for Molecular Biology/European Conference on Computational Biology, Jul 2025, Liverpool, United Kingdom Communication dans un congrès hal-05131891v1
Genotyping a thousand animals using low coverage sequencing and imputation Cervin Guyomar,Denis Milan,Christophe Klopp,Cécile Donnadieu,Bertrand Servinet al. Genotoul biostat bioinfo day, Genotoul, Nov 2023, Toulouse, France Communication dans un congrès hal-04669286v1
Functional miRNA annotation in teleost fish Cervin Guyomar,Thomas Desvignes,Julien Bobe AQUA-FAANG Conference, Oct 2023, Edinburgh, United Kingdom Communication dans un congrès hal-04693216v1
Hippo pathway-mediated regulation of micropyle formation by microRNA 202 (miR-202) in the fish oocyte Sarah JANATI IDRISSI,Mariana Roza de Abreu,Cervin Guyomar,Martin Pšenička,Fernanda de Melloet al. 12. International Symposium on Reproductive Physiology of Fish, May 2023, Chersonissos, Greece Communication dans un congrès hal-04210922v1
UN EXTRAIT DE LEVURE AMELIORE L'EFFICACITE D'UN REGIME A BASE DE PROTEINES ANIMALES TRANSFORMEES CHEZ LA TRUITE ARC-EN-CIEL ET MODULE LA REPONSE INTESTINALE Laura Frohn,Sandrine Skiba-Cassy,Frédéric Terrier,Pierre Aguirre,Cervin Guyomaret al. 7èmes Journées Recherche Filière Piscicole, ITAVI, Jul 2022, Paris, France Communication dans un congrès hal-04311786v1
Hippo pathway-mediated regulation of micropyle formation by micro RNA 202 (miR-202) in the fish oocyte Mariana Roza de Abreu,Sarah JANATI IDRISSI,Fernanda de Mello,Cervin Guyomar,Thuy Thao Vi Nguyenet al. 8. International Workshop on the Biology of Fish Gametes, Sep 2022, Gdansk, Poland Communication dans un congrès hal-04211036v1
Génomique fonctionnelle du déterminisme maternel du neurodéveloppement et du comportement chez les vertébrés Antoine Clement,Cervin Guyomar,Amaury Herpin,Violaine Colson,Julien Bobe Reprosciences 2021, Apr 2021, En ligne, France Communication dans un congrès hal-03277813v1
Reference-guided genome assembly in metagenomic samples Cervin Guyomar,Wesley Delage,Fabrice Legeai,Christophe Mougel,Jean-Christophe Simonet al. JOBIM 2019 - Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2019, Nantes, France. pp.1-8 Communication dans un congrès hal-02308257v1
Multi-scale characterization of symbiont diversity in the pea aphid complex through metagenomic approaches Cervin Guyomar,Fabrice Legeai,Christophe Mougel,Claire Lemaitre,Jean-Christophe Simon International Conference on Holobionts, Apr 2017, Paris, France Communication dans un congrès hal-01638839v1

Logiciel (2)

PARSEC Cervin Guyomar,Bertrand Servin 2025, ⟨swh:1:dir:19771d312143bd56d9bafaf23abe66e26bf5216d;origin=https://github.com/cguyomar/PARSEC;visit=swh:1:snp:9ab8a5f497792a7fb635122df8ee1033dece5193;anchor=swh:1:rev:c4a9a0f518e2892904628e80222657fc6612f1f8⟩ Logiciel hal-04877682v1
TAGADA: Transcript And Gene Assembly, Deconvolution, Analysis Cyril Kurylo,Cervin Guyomar,Sarah Djebali,Sylvain Foissac 2024, ⟨swh:1:dir:53d48ed6773c2d1bcd11ed32b0ccb2bdda4fc87c⟩ Logiciel hal-04746401v1

Pré-publication, Document de travail (2)

Empowering bioinformatics communities with Nextflow and nf-core Björn E Langer,Andreia Amaral,Marie-Odile Baudement,Franziska Bonath,Mathieu Charleset al. 2024 Pré-publication, Document de travail hal-04770333v1
Autism-related gene intergenerationally regulates neurodevelopment and behavior in fish through non-genetic mechanisms Antoine Clement,Constance Merdrignac,Sergi Ruig Puiggros,Aurélien Brionne,Thuy Thao Vi Nguyenet al. 2024 Pré-publication, Document de travail (preprint/prepublication) hal-04693265v1

Chapitre d'ouvrage (1)

Metagenomics and Metatranscriptomics Cervin Guyomar,Claire Lemaitre From Sequences to Graphs: Discrete Methods and Structures for Bioinformatics, ISTE, 2022, 9781789450668 Chapitre d'ouvrage hal-03844316v1

Thèse (1)

Développement et applications d'outils d'analyse métagénomique des communautés microbiennes associées aux insectes Cervin Guyomar Sciences agricoles. Université de Rennes, 2018. Français. ⟨NNT : 2018REN1B049⟩ Thèse tel-01955222v2

Mémoire d'étudiant (1)

Régression fonctionnelle de Poisson pour l'analyse de données de séquençage haut-débit Cervin Guyomar Sciences du Vivant [q-bio]. 2015 Mémoire d'étudiant dumas-01296665v1