Charles Robert

Présentation

Publications

Article dans une revue (27)

Heligeom: A web resource to generate, analyze, and visualize filament architectures based on pairwise association geometries of biological macromolecules Hubert Santuz,Benoist Laurent,Charles H Robert,Chantal Prévost Journal of Molecular Biology, 2025, 437 (15), pp.169019. ⟨10.1016/j.jmb.2025.169019⟩ Article dans une revue hal-05016965v1
Tripeptide loop closure: a detailed study of reconstructions based on Ramachandran distributions Timothee O'Donnell,Charles H Robert,Frédéric Cazals Proteins - Structure, Function and Bioinformatics, 2022, 90 (3), pp.858-868. ⟨10.1002/prot.26281⟩ Article dans une revue hal-03232851v1
Building Biological Relevance Into Integrative Modelling of Macromolecular Assemblies Anne-Elisabeth Molza,Yvonne Westermaier,Magali Moutte,Pierre Ducrot,Claudia Danilowiczet al. Frontiers in Molecular Biosciences, 2022, 9, pp.826136. ⟨10.3389/fmolb.2022.826136⟩ Article dans une revue hal-03826944v1
Modeling Perturbations in Protein Filaments at the Micro and Meso Scale using NAMD and PTools/Heligeom Benjamin Boyer,Benoist Laurent,Charles H. Robert,Chantal Prévost Bio-protocol , 2021, 11 (14), ⟨10.21769/BioProtoc.4097⟩ Article dans une revue hal-03365534v1
Reproducibility report: Estimating friction coefficients of mixed globular/chain molecules, such as protein/DNA complexes. Charles Robert The ReScience journal, 2020, ⟨10.5281/ZENODO.3886412⟩ Article dans une revue hal-02988870v1
Mobility and core-protein binding patterns of disordered C-terminal tails in β-tubulin isotypes. Yoann Laurin,Joël Eyer,Charles H. Robert,C Prévost,S. Sacquin-Mora Biochemistry (mosc.), 2017, ⟨10.1021/acs.biochem.6b00988⟩ Article dans une revue hal-01497972v1
Hybridizing Rapidly Exploring Random Trees and Basin Hopping Yields an Improved Exploration of Energy Landscapes Christine A. Roth,Tom Dreyfus,Charles H. Robert,Frédéric Cazals Journal of Computational Chemistry, 2016, 37, pp.752. ⟨10.1002/jcc.24256⟩ Article dans une revue istex hal-01497994v1
Hybridizing rapidly growing random trees and basin hopping yields an improved exploration of energy landscapes Andrea Roth,Tom Dreyfus,Charles H Robert,Frédéric Cazals Journal of Computational Chemistry, 2016, 37 (8), pp.14 Article dans une revue hal-01423282v1
Conformational ensembles and sampled landscapes: analysis and comparison Frédéric Cazals,Christine--Andrea Roth,Tom Dreyfus,Dorian Mazauric,Charles H. Robert Journal of Computational Chemistry, 2015, 36, pp.1213--31. ⟨10.1002/jcc.23913⟩ Article dans une revue hal-01498027v1
Changes in protein structure at the interface accompanying complex formation. Devlina Chakravarty,Joel Janin,Charles H. Robert,Pinak Chakrabarti International Union of Crystallography journal, 2015, 2 (Pt 6), pp.643--652. ⟨10.1107/S2052252515015250⟩ Article dans une revue hal-01498035v1
Investigating the Structural Variability and Binding Modes of the Glioma Targeting NFL-TBS.40-63 Peptide on Tubulin Yoann Laurin,Philippe Savarin,Charles H Robert,Masayuki Takahashi,Joël Eyeret al. Biochemistry, 2015, ⟨10.1021/acs.biochem.5b00146⟩ Article dans une revue hal-01451181v1
An Integrative Approach to the Study of Filamentous Oligomeric Assemblies, with Application to RecA Benjamin Boyer,Johann Ezelin,Pierre Poulain,Adrien Saladin,Martin Zachariaset al. PLoS ONE, 2015, 10 (3), pp.e0116414. ⟨10.1371/journal.pone.0116414⟩ Article dans une revue hal-01230983v1
Conformational Ensembles and Sampled Energy Landscapes: Analysis and Comparison Frédéric Cazals,Tom Dreyfus,Dorian Mazauric,Andrea Roth,Charles Robert Journal of Computational Chemistry, 2015, 36, 6, pp.18 Article dans une revue hal-01245395v1
Reassessing buried surface areas in protein-protein complexes. Devlina Chakravarty,Mainak Guharoy,Charles H. Robert,Pinak Chakrabarti,Joel Janin Protein Sci., 2013, 22, pp.1453--57. ⟨10.1002/pro.2330⟩ Article dans une revue hal-01498068v1
Community-Wide Assessment of Protein-Interface Modeling Suggests Improvements to Design Methodology. Sarel J Fleishman,Timothy A Whitehead,Eva-Maria Strauch,Jacob E Corn,Sanbo Qinet al. Journal of Molecular Biology, 2011, 414 (2), in press. ⟨10.1016/j.jmb.2011.09.031⟩ Article dans une revue inria-00637848v1
Free Energy Profiles along Consensus Normal Modes Provide Insight into HIV-1 Protease Flap Opening Paulo R Batista,Gaurav Pandey,Pedro G Pascutti,Paulo M Bisch,David Perahiaet al. Journal of Chemical Theory and Computation, 2011, 7 (8), pp.2348-2352. ⟨10.1021/ct200237u⟩ Article dans une revue hal-02988887v1
A Computational Study of a Recreated G Protein-GEF Reaction Intermediate Competent for Nucleotide Exchange: Fate of the Mg Ion Mériam Ben Hamida-Rebaï,Charles Robert PLoS ONE, 2010, 5 (2), pp.e9142. ⟨10.1371/journal.pone.0009142⟩ Article dans une revue hal-02988890v1
Consensus modes, a robust description of protein collective motions from multiple-minima normal mode analysis—application to the HIV-1 protease Paulo Ricardo Batista,Charles Robert,Jean-Didier Maréchal,Meriam Ben Hamida-Rebaï,Pedro Geraldo Pascuttiet al. Physical Chemistry Chemical Physics, 2010, 12 (12), pp.2850. ⟨10.1039/b919148h⟩ Article dans une revue istex hal-02988886v1
Side-chain rotamer transitions at protein-protein interfaces Mainak Guharoy,Joël Janin,Charles H. Robert Proteins - Structure, Function and Bioinformatics, 2010, 78 (15), pp.3219-3225. ⟨10.1002/prot.22821⟩ Article dans une revue istex hal-02924964v1
Role of Nucleic Acid Binding in Sir3p-Dependent Interactions with Chromatin Fibers Nicholas L Adkins,Steve J Mcbryant,Cotteka N Johnson,Jennifer M Leidy,Christopher L Woodcocket al. Biochemistry, 2009, 48 (2), pp.276-288. ⟨10.1021/bi801705g⟩ Article dans une revue hal-02988876v1
Normal mode analysis as a prerequisite for drug design : application to Matrix Metalloproteinases inhibitors N. Floquet,Marechal J.D.,Badet-Denisot M.A.,Robert C.H.,M. Dauchezet al. FEBS Letters, 2006, 580, pp.5130-5136 Article dans une revue hal-00105805v1
Normal mode analysis as a prerequisite for drug design : application to matrix metalloproteinases inhibitors. N. Floquet,Jd. Marechal,Ma. Badet-Denisot,Ch. Robert,M. Dauchezet al. FEBS Letters, 2006, 580(22), pp.5130-5136. ⟨10.1016/j.febslet.2006.08.037⟩ Article dans une revue istex hal-00109799v1
Odorant binding and conformational dynamics in the odorant binding protein Eric Hajjar,David Perahia,Hélène Débat,Claude Nespoulous,Charles H. Robert Journal of Biological Chemistry, 2006, 281 (40), pp.29929-29937. ⟨10.1074/jbc.M604869200⟩ Article dans une revue hal-02660896v1
Integrating Three Views of Arf1 Activation Dynamics Charles H. Robert,Jacqueline Cherfils,Liliane Mouawad,David Perahia Journal of Molecular Biology, 2004, 337 (4), pp.969-983. ⟨10.1016/j.jmb.2004.01.052⟩ Article dans une revue istex hal-02924977v1
Collective-variable Monte Carlo simulation of DNA Henry A Gabb,C. Prevost,G. Bertucat,Ch Robert,Richard Lavery Journal of Computational Chemistry, 1997, 18, pp.2001-2011 Article dans une revue hal-00314819v1
Significance of bound water to local chain conformations in protein crystals. Charles H. Robert,P. Shing Ho Proceedings of the National Academy of Sciences of the United States of America, 1995, 92 (16), pp.7600-7604. ⟨10.1073/pnas.92.16.7600⟩ Article dans une revue hal-02925003v1
Three-dimensional structure of extended chromatin fibers as revealed by tapping-mode scanning force microscopy. S. Leuba,Guoliang Yang,Charles Robert,B. Samori,K. van Holdeet al. Proceedings of the National Academy of Sciences of the United States of America, 1994, 91 (24), pp.11621-11625. ⟨10.1073/pnas.91.24.11621⟩ Article dans une revue hal-02925016v1

Communication dans un congrès (1)

Abstracts of the 28th International West Coast Chromatin and Chromosomes Conference J Adam Hall,Nicholas L Adkins,Philippe T Georgel,Cotteka N Johnson,Charles Robertet al. 28th International West Coast Chromatin and Chromosomes Conference, Oct 2007, Asilomar, United States. pp.647-647, ⟨10.1139/O07-907⟩ Communication dans un congrès hal-02988882v1

Poster de conférence (1)

Simulations of aromatic ligand dissociation from a rat odorant binding protein Eric Hajjar,Claude Nespoulous,Hélène Débat,David Perahia,Charles H. Robert Biophysical Society 49th Annual Meeting, Feb 2005, Long Beach, California, United States. , pp.1 affiche, 2005 Poster de conférence hal-02832126v1

Chapitre d'ouvrage (3)

Modeling macromolecular complexes: a journey across scales Frédéric Cazals,Tom Dreyfus,Charles H. Robert Modeling in Computational Biology and Biomedicine: A Multidisciplinary Endeavor, Springer-Verlag Berlin Heidelberg, 2013 Chapitre d'ouvrage hal-01498079v1
Modeling Macro-molecular Complexes : a Journey Across Scales Frédéric Cazals,Tom. Dreyfus,Charles H. Robert Cazals, Frédéric and Kornprobst, Pierre. Modeling in Computational Biology and Medicine: : A Multidisciplinary Endeavor, Springer, pp.3-45, 2012, 978-3-642-31207-6 (Print) ; 978-3-642-31208-3 (Online). ⟨10.1007/978-3-642-31208-3_1⟩ Chapitre d'ouvrage istex hal-00849827v1
Chapter 6: Receptor Flexibility in Ligand Docking and Virtual Screening. Maria A. Miteva,Charles H. Robert,J. D. Marechal,David Perahia In-silico lead discovery, Bentham Science Publishers, 2011 Chapitre d'ouvrage hal-01498123v1

Pré-publication, Document de travail (1)

Searching α−solenoid proteins involved in organellar gene expression Céline Cattelin,Rebecca Goulancourt,Emanuel Chatellet,Alexis Astatourian,Charles Robertet al. 2025 Pré-publication, Document de travail hal-05361647v1

Rapport (3)

Hybridizing rapidly growing random trees and basin hopping yields an improved exploration of energy landscapes Christine--Andrea Roth,Tom Dreyfus,Charles H. Robert,Frédéric Cazals [Research Report] RR-8768, Inria. 2015, pp.29 Rapport (rapport de recherche) hal-01191028v1
Conformational Ensembles and Sampled Energy Landscapes: Analysis and Comparison Frédéric Cazals,Tom Dreyfus,Dorian Mazauric,Andrea Roth,Charles Robert [Research Report] RR-8610, INRIA. 2014 Rapport (rapport de recherche) hal-01076317v3
Towards Morse Theory for Point Cloud Data Frédéric Cazals,Christian Mueller,Charles Robert,Andrea Roth [Research Report] RR-8331, RESEARCH CENTRE SOPHIA ANTIPOLIS – MÉDITERRANÉE. 2013 Rapport (rapport de recherche) hal-02988939v1