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Chris Bowler

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New plastids, old proteins: repeated endosymbiotic acquisitions in kareniacean dinoflagellates

Anna Mg Novák Vanclová , Charlotte Nef , Zoltán Füssy , Adél Vancl , Fuhai Liu
Journal articles hal-04512033v1
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Presence of vitamin B$_{12}$ metabolism in the last common ancestor of land plants

Richard G Dorrell , Charlotte Nef , Setsen Altan-Ochir , Chris Bowler , Alison G Smith
Proceedings of the Royal Society of London. Series B, Containing papers of a Biological character. Royal Society (Great Britain), In press, ⟨10.1098/RSTB.2023.0354⟩
Journal articles hal-04237983v2
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Complementary environmental analysis and functional characterization of lower glycolysis-gluconeogenesis in the diatom plastid

Richard G Dorrell , Youjun Zhang , Yue Liang , Nolwenn Gueguen , Tomomi Nonoyama
The Plant cell, In press, Online ahead of print. ⟨10.1093/plcell/koae168⟩
Journal articles hal-04607109v1
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Diversity of the Pacific Ocean coral reef microbiome

Pierre Galand , Hans-Joachim Ruscheweyh , Guillem Salazar , Corentin Hochart , Nicolas Henry
Nature Communications, 2023, 14 (1), pp.3039. ⟨10.1038/s41467-023-38500-x⟩
Journal articles hal-04176291v1
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Top abundant deep ocean heterotrophic bacteria can be retrieved by cultivation

Isabel Sanz-Sáez , Pablo Sánchez , Guillem Salazar , Shinichi Sunagawa , Colomban de Vargas
ISME Communications, 2023, 3 (1), ⟨10.1038/s43705-023-00290-0⟩
Journal articles cea-04481824v1

Convergent evolution and horizontal gene transfer in Arctic Ocean microalgae

Richard Dorrell , Alan Kuo , Zoltan Füssy , Elisabeth Richardson , Asaf Salamov
Life Science Alliance, 2023, 6 (3), pp.e202201833. ⟨10.26508/lsa.202201833⟩
Journal articles cea-04321515v1
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Integrative omics framework for characterization of coral reef ecosystems from the Tara Pacific expedition

Caroline Belser , Julie Poulain , Karine Labadie , Frederick Gavory , Adriana Alberti
Scientific Data , 2023, 10 (1), pp.326. ⟨10.1038/s41597-023-02204-0⟩
Journal articles hal-04176297v1
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Endogenous viral elements reveal associations between a non-retroviral RNA virus and symbiotic dinoflagellate genomes

Alex Veglia , Kalia Bistolas , Christian Voolstra , Benjamin Hume , Hans-Joachim Ruscheweyh
Communications Biology, 2023, 6 (1), pp.566. ⟨10.1038/s42003-023-04917-9⟩
Journal articles hal-04176296v1

Characterization of a Marine Diatom Chitin Synthase Using a Combination of Meta-Omics, Genomics, and Heterologous Expression Approaches

Zhanru Shao , Osei Ampomah , Fabio Rocha Jimenez Vieira , Richard Dorrell , Shaoxuan Li
mSystems, 2023, 8 (2), ⟨10.1128/msystems.01131-22⟩
Journal articles hal-04259287v1
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Pan-Arctic plankton community structure and its global connectivity

Federico M Ibarbalz , Nicolas Henry , Frédéric Mahé , Mathieu Ardyna , Adriana Zingone
Elementa: Science of the Anthropocene, 2023, 11 (1), pp.00060. ⟨10.1525/elementa.2022.00060⟩
Journal articles hal-04267640v1
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Telomere DNA length regulation is influenced by seasonal temperature differences in short-lived but not in long-lived reef-building corals

Alice Rouan , Melanie Pousse , Nadir Djerbi , Barbara Porro , Guillaume Bourdin
Nature Communications, 2023, 14 (1), pp.3038. ⟨10.1038/s41467-023-38499-1⟩
Journal articles cea-04171809v1
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Disparate genetic divergence patterns in three corals across a pan-Pacific environmental gradient highlight species-specific adaptation

Christian R Voolstra , Benjamin C C Hume , Eric J Armstrong , Guinther Mitushasi , Barbara Porro
npj Biodiversity, 2023, 2 (1), pp.15. ⟨10.1038/s44185-023-00020-8⟩
Journal articles hal-04157744v1
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Different environmental response strategies in sympatric corals from Pacific Islands

Barbara Porro , Thamilla Zamoum , Didier Forcioli , Eric Gilson , Adrien Poquet
Communications Earth & Environment, 2023, 4 (1), pp.311. ⟨10.1038/s43247-023-00946-8⟩
Journal articles hal-04205154v1
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Ecology of Endozoicomonadaceae in three coral genera across the Pacific Ocean

Corentin Hochart , Lucas Paoli , Hans-Joachim Ruscheweyh , Guillem Salazar , Emilie Boissin
Nature Communications, 2023, 14 (1), pp.3037. ⟨10.1038/s41467-023-38502-9⟩
Journal articles hal-04176293v1
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PlantACT! – how to tackle the climate crisis

Heribert Hirt , Salim Al-Babili , Marilia Almeida-Trapp , Martin Antoine , Manuel Aranda
Trends in Plant Science, 2023, 28 (5), pp.537-543. ⟨10.1016/j.tplants.2023.01.005⟩
Journal articles hal-04037738v1
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Pervasive tandem duplications and convergent evolution shape coral genomes

Benjamin Noel , France Denoeud , Alice Rouan , Carol Buitrago-López , Laura Capasso
Genome Biology, 2023, 24 (1), pp.123. ⟨10.1186/s13059-023-02960-7⟩
Journal articles hal-04117388v1
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Host transcriptomic plasticity and photosymbiotic fidelity underpin $Pocillopora$ acclimatization across thermal regimes in the Pacific Ocean

Eric J Armstrong , Julie Lê-Hoang , Quentin Carradec , Jean-Marc Aury , Benjamin Noel
Nature Communications, 2023, 14, pp.3056. ⟨10.1038/s41467-023-38610-6⟩
Journal articles cea-04171796v1
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Multi-omics determination of metabolome diversity in natural coral populations in the Pacific Ocean

Maggie M Reddy , Corentine Goossens , Yuxiang Zhou , Slimane Chaib , Delphine Raviglione
Communications Earth & Environment, 2023, 4 (1), pp.281. ⟨10.1038/s43247-023-00942-y⟩
Journal articles hal-04184949v1
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The model diatom Phaeodactylum tricornutum provides insights into the diversity and function of microeukaryotic DNA methyltransferases

Antoine Hoguin , Feng Yang , Agnès Groisillier , Chris Bowler , Auguste Genovesio
Communications Biology, 2023, 6 (1), pp.253. ⟨10.1038/s42003-023-04629-0⟩
Journal articles hal-04024906v1
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Hypometabolism to survive the long polar night and subsequent successful return to light in the diatom Fragilariopsis cylindrus

Nathalie Joli , Lorenzo Concia , Karel Mocaer , Julie Guterman , Juliette Laude
New Phytologist, 2023, 241 (5), pp.2193-2208. ⟨10.1111/nph.19387⟩
Journal articles hal-04357816v1
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Predicting global distributions of eukaryotic plankton communities from satellite data

Hiroto Kaneko , Hisashi Endo , Nicolas Henry , Cédric Berney , Frédéric Mahé
ISME Communications, 2023, 3 (1), pp.101. ⟨10.1038/s43705-023-00308-7⟩
Journal articles hal-04394784v1

Pan-Arctic plankton community structure and its global connectivity

Federico Ibarbalz , Nicolas Henry , Frédéric Mahé , Mathieu Ardyna , Adriana Zingone
Elementa: Science of the Anthropocene, 2023, 11 (1), ⟨10.1525/elementa.2022.00060⟩
Journal articles hal-04295751v1
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Histone H1 protects telomeric repeats from H3K27me3 invasion in Arabidopsis

Gianluca Teano , Lorenzo Concia , Léa Wolff , Léopold Carron , Ivona Biocanin
Cell Reports, 2023, 42 (8), pp.112894. ⟨10.1016/j.celrep.2023.112894⟩
Journal articles hal-04268515v1
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Differences in carbonate chemistry up-regulation of long-lived reef-building corals

Marine Canesi , Éric Douville , Paolo Montagna , Marco Taviani , Jarosław Stolarski
Scientific Reports, 2023, 13 (1), pp.11589. ⟨10.1038/s41598-023-37598-9⟩
Journal articles cea-04170119v1
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Ocean-wide comparisons of mesopelagic planktonic community structures

Janaina Rigonato , Marko Budinich , Alejandro Murillo , Manoela Brandão , Juan Pierella Karlusich
ISME Communications, 2023, 3 (1), pp.83. ⟨10.1038/s43705-023-00279-9⟩
Journal articles hal-04184772v1
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Mission Tara Microplastics: a holistic set of protocols and data resources for the field investigation of plastic pollution along the land-sea continuum in Europe

Jean-François Ghiglione , Valérie Barbe , Stéphane Bruzaud , Gaëtan Burgaud , Jérôme Cachot
Environmental Science and Pollution Research, 2023, ⟨10.1007/s11356-023-26883-9⟩
Journal articles hal-04302147v1
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Open science resources from the Tara Pacific expedition across coral reef and surface ocean ecosystems

Fabien Lombard , Guillaume Bourdin , Stéphane Pesant , Sylvain Agostini , Alberto Baudena
Scientific Data , 2023, 10 (1), pp.324. ⟨10.1038/s41597-022-01757-w⟩
Journal articles hal-04164118v1
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Priorities for ocean microbiome research

Andre Abreu , Etienne Bourgois , Adam Gristwood , Romain Troublé , Silvia Acinas
Nature Microbiology, 2022, 7 (7), pp.937-947. ⟨10.1038/s41564-022-01145-5⟩
Journal articles hal-03781942v1

Análisis de metabarcoding de ADN para el fitoplancton en cuatro sectores del Atlántico Suroeste en el contexto del océano global

Federico Ibarbalz , Juan Pierella Karlusich , Sergio Velasco Ayuso , Natalia Visintini , Lionel Guidi
Ecología Austral, 2022, 32 (3), pp.835-848. ⟨10.25260/EA.22.32.3.0.1812⟩
Journal articles hal-03954546v1
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A robust approach to estimate relative phytoplankton cell abundances from metagenomes

Juan José Pierella Karlusich , Eric Pelletier , Lucie Zinger , Fabien Lombard , Adriana Zingone
Molecular Ecology Resources, 2022, 23 (1), pp.16-40. ⟨10.1111/1755-0998.13592⟩
Journal articles hal-03559541v1

The possible fates of Fragilariopsis cylindrus (polar diatom) cells exposed to prolonged darkness

Théo Sciandra , Marie‐hélène Forget , Flavienne Bruyant , Marine Béguin , Thomas Lacour
Journal of Phycology, 2022, 58 (2), pp.281-296. ⟨10.1111/jpy.13232⟩
Journal articles hal-03872944v1
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Coupling Imaging and Omics in Plankton Surveys: State-of-the-Art, Challenges, and Future Directions

Juan José Pierella Karlusich , Fabien Lombard , Jean-Olivier Irisson , Chris Bowler , Rachel Foster
Frontiers in Marine Science, 2022, 9, ⟨10.3389/fmars.2022.878803⟩
Journal articles hal-03956267v1

Functional repertoire convergence of distantly related eukaryotic plankton lineages abundant in the sunlit ocean

Tom Delmont , Morgan Gaia , Damien Hinsinger , Paul Frémont , Chiara Vanni
Cell Genomics, 2022, 2 (5), pp.100123. ⟨10.1016/j.xgen.2022.100123⟩
Journal articles hal-03872935v2

Molecular biology for green recovery—A call for action

Marta Rodríguez-Martínez , Jens Nielsen , Sam Dupont , Jessica Vamathevan , Beverley Glover
PLoS Biology, 2022, 20 (4), pp.e3001623. ⟨10.1371/journal.pbio.3001623⟩
Journal articles hal-04262482v1

Whole-genome scanning reveals environmental selection mechanisms that shape diversity in populations of the epipelagic diatom Chaetoceros

Charlotte Nef , Mohammed-Amin Madoui , Éric Pelletier , Chris Bowler
PLoS Biology, 2022, 20 (11), pp.e3001893. ⟨10.1371/journal.pbio.3001893⟩
Journal articles cea-04321570v1
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Diversity and ecological footprint of Global Ocean RNA viruses

Guillermo Dominguez-Huerta , Ahmed Zayed , James Wainaina , Jiarong Guo , Funing Tian
Science, 2022, 376 (6598), pp.1202-1208. ⟨10.1126/science.abn6358⟩
Journal articles hal-03781935v1
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A metabolic, phylogenomic and environmental atlas of diatom plastid transporters from the model species Phaeodactylum

Shun Liu , Mattia Storti , Giovanni Finazzi , Chris Bowler , Richard G Dorrell
Frontiers in Plant Science, 2022, 13, pp.950467. ⟨10.3389/fpls.2022.950467⟩
Journal articles hal-03828869v1
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Convergent evolution and horizontal gene transfer in Arctic Ocean microalgae

Richard Dorrell , Alan Kuo , Zoltan Füssy , Elisabeth Richardson , Asaf Salamov
Life Science Alliance, 2022, 6 (3), pp.e202201833. ⟨10.26508/lsa.202201833⟩
Journal articles hal-03859139v1
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Dynamic Cell Imaging: application to the diatom Phaeodactylum tricornutum under environmental stresses

Houda Bey , Florent Charton , Helena Cruz de Carvalho , Shun Liu , Richard G Dorrell
European Journal of Phycology, inPress, ⟨10.1080/09670262.2022.2081732⟩
Journal articles hal-03859082v1
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Contribution of genome‐scale metabolic modelling to niche theory

Antoine Régimbeau , Marko Budinich , Abdelhalim Larhlimi , Juan José Pierella Karlusich , Olivier Aumont
Ecology Letters, 2022, 25 (6), pp.1352-1364. ⟨10.1111/ele.13954⟩
Journal articles hal-03635158v1
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In vivo localization of iron starvation induced proteins under variable iron supplementation regimes in Phaeodactylum tricornutum

Elena Kazamia , Jan Mach , Jeffrey B Mcquaid , Xia Gao , Tyler H Coale
Plant Direct, 2022, 6 (12), pp.e472. ⟨10.1002/pld3.472⟩
Journal articles hal-04294754v1
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An evolution towards scientific consensus for a sustainable ocean future

Françoise Gaill , Tanya Brodie Rudolph , Lara Lebleu , Denis Allemand , Robert Blasiak
npj Ocean Sustainability, 2022, 1, pp.7. ⟨10.1038/s44183-022-00007-1⟩
Journal articles hal-03910001v1

Biosynthetic potential of the global ocean microbiome

Lucas Paoli , Hans-Joachim Ruscheweyh , Clarissa Forneris , Florian Hubrich , Satria Kautsar
Nature, 2022, 607 (7917), pp.111-118. ⟨10.1038/s41586-022-04862-3⟩
Journal articles hal-04376240v1

Whole-genome scanning reveals environmental selection mechanisms that shape diversity in populations of the epipelagic diatom Chaetoceros.

Charlotte Nef , Mohammed-Amin Madoui , Éric Pelletier , Chris Bowler
PLoS Biology, 2022, 20 (11), pp.e3001893. ⟨10.1371/journal.pbio.3001893⟩
Journal articles hal-03912026v1

Cryptic and abundant marine viruses at the evolutionary origins of Earth’s RNA virome

Ahmed Zayed , James Wainaina , Guillermo Dominguez-Huerta , Eric Pelletier , Jiarong Guo
Science, 2022, 376 (6589), pp.156-162. ⟨10.1126/science.abm5847⟩
Journal articles hal-03872940v1
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Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems

Daniel Richter , Romain Watteaux , Thomas Vannier , Jade Leconte , Paul Frémont
eLife, 2022, 11, pp.e78129. ⟨10.7554/eLife.78129⟩
Journal articles hal-02399723v2
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Paleo-diatom composition from Santa Barbara Basin deep-sea sediments: a comparison of 18S-V9 and diat-rbcL metabarcoding vs shotgun metagenomics

Linda Armbrecht , Raphael Eisenhofer , José Utge , Elizabeth Sibert , Fabio Rocha
ISME Communications, 2021, 1 (1), pp.66. ⟨10.1038/s43705-021-00070-8⟩
Journal articles hal-03875226v1
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Evolutionary analysis of DNA methyltransferases in microeukaryotes: Insights from the model diatom Phaeodactylum tricornutum

Antoine Hoguin , Ouardia Ait , Chris Bowler , Auguste Genovesio , Fabio Rocha Jimenez Vieira
BioRxiv, inPress
Journal articles hal-03388012v1
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Compendium of 530 metagenome-assembled bacterial and archaeal genomes from the polar Arctic Ocean

Marta Royo-Llonch , Pablo Sánchez , Clara Ruiz-González , Guillem Salazar , Carlos Pedrós-Alió
Nature Microbiology, 2021, 6 (12), pp.1561-1574. ⟨10.1038/s41564-021-00979-9⟩
Journal articles hal-03781908v1

Phylogenomic fingerprinting of tempo and functions of horizontal gene transfer within ochrophytes

Richard Dorrell , Adrien Villain , Benoît Perez-Lamarque , Guillemette Audren de Kerdrel , Giselle Mccallum
Proceedings of the National Academy of Sciences of the United States of America, 2021, 118 (4), ⟨10.1073/pnas.2009974118⟩
Journal articles cea-04321619v1

Mitotic recombination between homologous chromosomes drives genomic diversity in diatoms

Petra Bulankova , Mirna Sekulić , Denis Jallet , Charlotte Nef , Cock van Oosterhout
Current Biology - CB, 2021, 31 (15), pp.3221-+. ⟨10.1016/j.cub.2021.05.013⟩
Journal articles hal-03333507v1
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Global distribution patterns of marine nitrogen-fixers by imaging and molecular methods

Juan José Pierella Karlusich , Eric Pelletier , Fabien Lombard , Madeline Carsique , Etienne Dvorak
Nature Communications, 2021, 12, pp.4160. ⟨10.1038/s41467-021-24299-y⟩
Journal articles hal-03334117v2
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Phylogenomic fingerprinting of tempo and functions of horizontal gene transfer within ochrophytes

Richard G Dorrell , Adrien Villain , Benoît Perez-Lamarque , Guillemette Audren de Kerdrel , Giselle Mccallum
Proceedings of the National Academy of Sciences of the United States of America, 2021, 118 (4), ⟨10.1073/pnas.2009974118/-/DCSupplemental⟩
Journal articles mnhn-03969507v1
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Macroscale patterns of oceanic zooplankton composition and size structure

Manoela Brandão , Fabio Benedetti , Séverine Martini , Yawouvi Dodji Soviadan , Jean-Olivier Irisson
Scientific Reports, 2021, 11 (1), ⟨10.1038/s41598-021-94615-5⟩
Journal articles hal-03318806v1

Global drivers of eukaryotic plankton biogeography in the sunlit ocean

Guilhem Sommeria-Klein , Romain Watteaux , Federico Ibarbalz , Juan José Pierella Karlusich , Daniele Iudicone
Science, 2021, 374 (6567), pp.594-599. ⟨10.1126/science.abb3717⟩
Journal articles hal-03453705v1
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Inversion of phytoplankton pigment vertical profiles from satellite data using machine learning

Agathe Puissant , Roy El Hourany , Anastase Alexandre Charantonis , Chris Bowler , Sylvie Thiria
Remote Sensing, 2021, 13 (8), pp.1445. ⟨10.3390/rs13081445⟩
Journal articles hal-03218439v1
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Evolutionary analysis of DNA methyltransferases in microeukaryotes: Insights from the model diatom Phaeodactylum tricornutum

Leila Tirichine , Antoine Hoguin , Ouardia Ait Mohamed , Chris Bowler , Auguste Genovesio
bioRxiv : n'est pas une revue mais un serveur de preprint, inPress, ⟨10.1101/2021.06.11.447926⟩
Journal articles hal-03384427v1
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Environmental vulnerability of the global ocean epipelagic plankton community interactome

Samuel Chaffron , Erwan Delage , Marko Budinich , Damien Vintache , Nicolas Henry
Science Advances , 2021, 7 (35), pp.eabg1921. ⟨10.1126/sciadv.abg1921⟩
Journal articles hal-03443359v2
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Genome-wide analysis of allele-specific expression of genes in the model diatom Phaeodactylum tricornutum

Antoine Hoguin , Achal Rastogi , Chris Bowler , Leila Tirichine
Scientific Reports, 2021, 11, ⟨10.1038/s41598-021-82529-1⟩
Journal articles hal-03384414v1

Heterotrophic bacterial diazotrophs are more abundant than their cyanobacterial counterparts in metagenomes covering most of the sunlit ocean

Tom Delmont , Juan José Pierella Karlusich , Iva Veseli , Jessika Fuessel , A. Murat Eren
The International Society of Microbiologial Ecology Journal, 2021, 16 (4), pp.927-936. ⟨10.1038/s41396-021-01135-1⟩
Journal articles hal-03480646v1
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Deep ocean metagenomes provide insight into the metabolic architecture of bathypelagic microbial communities

Silvia Acinas , Pablo Sánchez , Guillem Salazar , Francisco Cornejo-Castillo , Marta Sebastián
Communications Biology, 2021, 4 (1), ⟨10.1038/s42003-021-02112-2⟩
Journal articles hal-03238997v1
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PhaeoNet: A Holistic RNAseq-Based Portrait of Transcriptional Coordination in the Model Diatom Phaeodactylum tricornutum

Ouardia Ait-Mohamed , Anna M G Novák Vanclová , Nathalie Joli , Yue Liang , Xue Zhao
Frontiers in Plant Science, 2020, 11, ⟨10.3389/fpls.2020.590949⟩
Journal articles hal-02997835v1
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Tara Pacific Expedition’s Atmospheric Measurements of Marine Aerosols across the Atlantic and Pacific Oceans: Overview and Preliminary Results

J. Flores , G. Bourdin , O. Altaratz , M. Trainic , N. Lang-Yona
Bulletin of the American Meteorological Society, 2020, 101 (5), pp.E536-E554. ⟨10.1175/BAMS-D-18-0224.1⟩
Journal articles hal-02967981v1

Tara Oceans: towards global ocean ecosystems biology

Shinichi Sunagawa , Silvia Acinas , Peer Bork , Chris Bowler , Silvia Acinas
Nature Reviews Microbiology, 2020, 18 (8), pp.428-445. ⟨10.1038/s41579-020-0364-5⟩
Journal articles hal-04394809v1
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A Roadmap for using the UN decade of ocean science for sustainable development in support of science, policy, and action

Joachim Claudet , Laurent Bopp , William W.L. Cheung , Rodolphe Devillers , Elva Escobar-Briones
One Earth, 2020, 2 (1), pp.34-42. ⟨10.1016/j.oneear.2019.10.012⟩
Journal articles hal-02365617v1
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Large scale patterns of marine diatom richness: Drivers and trends in a changing ocean

Greta Busseni , Luigi Caputi , Roberta Piredda , Paul Fremont , Bruno Hay Mele
Global Ecology and Biogeography, 2020, 29 (11), pp.1915-1928. ⟨10.1111/geb.13161⟩
Journal articles hal-02992584v1
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Probing the Diversity of Polycomb and Trithorax Proteins in Cultured and Environmentally Sampled Microalgae

Xue Zhao , Anne Flore Deton Cabanillas , Alaguraj Veluchamy , Chris Bowler , Fabio Rocha Jimenez Vieira
Frontiers in Marine Science, 2020, 7, ⟨10.3389/fmars.2020.00189⟩
Journal articles hal-02997845v1
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Genome wide natural variation of H3K27me3 selectively marks genes predicted to be important for cell differentiation in Phaeodactylum tricornutum

Xue Zhao , Achal Rastogi , Anne Flore Deton Cabanillas , Ouardia Ait Mohamed , Catherine Cantrel
New Phytologist, 2020, 229, pp.3208 - 3220. ⟨10.1111/nph.17129⟩
Journal articles hal-03384417v1
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Genome-enabled phylogenetic and functional reconstruction of an araphid pennate diatom Plagiostriata sp. CCMP470, previously assigned as a radial centric diatom, and its bacterial commensal

Shinya Sato , Deepak Nanjappa , Richard G Dorrell , Fabio Rocha Jimenez Vieira , Elena Kazamia
Scientific Reports, 2020, 10 (1), pp.9449. ⟨10.1038/s41598-020-65941-x⟩
Journal articles inserm-02886223v1

A genomics approach reveals the global genetic polymorphism, structure, and functional diversity of ten accessions of the marine model diatom Phaeodactylum tricornutum

Achal Rastogi , Fabio Rocha Jimenez Vieira , Anne-Flore Deton-Cabanillas , Alaguraj Veluchamy , Catherine Cantrel
The International Society of Microbiologial Ecology Journal, 2019, 14 (2), pp.347-363. ⟨10.1038/s41396-019-0528-3⟩
Journal articles hal-02364824v1
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Meta-omics reveals genetic flexibility of diatom nitrogen transporters in response to environmental changes

Greta Busseni , Fabio Rocha Jimenez Vieira , Alberto Amato , Eric Pelletier , Juan Pierella Karlusich
Molecular Biology and Evolution, 2019, 36 (11), pp.2522-2535. ⟨10.1093/molbev/msz157⟩
Journal articles hal-02184019v1
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Arabidopsis S2Lb links AtCOMPASS-like and SDG2 activity in H3K4me3 independently from histone H2B monoubiquitination

Anne-Sophie Fiorucci , Clara Bourbousse , Lorenzo Concia , Martin Rougée , Anne-Flore Deton-Cabanillas
Genome Biology, 2019, 20 (100), ⟨10.1186/s13059-019-1705-4⟩
Journal articles hal-02156634v1
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Global Trends in Marine Plankton Diversity across Kingdoms of Life

Federico Ibarbalz , Nicolas Henry , Manoela Brandão , Severine Martini , Greta Busseni
Cell, 2019, 179 (5), pp.1084-1097.e21. ⟨10.1016/j.cell.2019.10.008⟩
Journal articles hal-03094778v1
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Community‐Level Responses to Iron Availability in Open Ocean Plankton Ecosystems

Luigi Caputi , Quentin Carradec , Damien Eveillard , Amos Kirilovsky , Eric Pelletier
Global Biogeochemical Cycles, 2019, 33 (3), pp.391-419. ⟨10.1029/2018GB006022⟩
Journal articles hal-02999805v1
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Phaeodactylum tricornutum

Chris Bowler , Angela Falciatore
Trends in Genetics, 2019, 35 (9), pp.706-707. ⟨10.1016/j.tig.2019.05.007⟩
Journal articles hal-02380836v1

Gene Expression Changes and Community Turnover Differentially Shape the Global Ocean Metatranscriptome

Guillem Salazar , Lucas Paoli , Adriana A. Alberti , Jaime Huerta-Cepas , Hans-Joachim Ruscheweyh
Cell, 2019, 179 (5), pp.1068-1083.e21. ⟨10.1016/j.cell.2019.10.014⟩
Journal articles hal-02964513v1
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A Potential Role for Epigenetic Processes in the Acclimation Response to Elevated pCO2 in the Model Diatom Phaeodactylum tricornutum

Ruiping Huang , Jiancheng Ding , Kunshan Gao , Maria Helena Cruz de Carvalho , Leïla Tirichine
Frontiers in Microbiology, 2019, 9, ⟨10.3389/fmicb.2018.03342⟩
Journal articles hal-02364855v1

Downregulation of mitochondrial alternative oxidase affects chloroplast function, redox status and stress response in a marine diatom

Omer Murik , Leïla Tirichine , Judit Prihoda , Yann Thomas , Wagner Araújo
New Phytologist, 2019, 221 (3), pp.1303-1316. ⟨10.1111/nph.15479⟩
Journal articles hal-02364894v1
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Observational Needs Supporting Marine Ecosystems Modeling and Forecasting: From the Global Ocean to Regional and Coastal Systems

Antonietta Capotondi , Michael Jacox , Chris Bowler , Maria Kavanaugh , Patrick Lehodey
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PhytoCRISP-Ex: a web-based and stand-alone application to find specific target sequences for CRISPR/CAS editing

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Reconstructing Dynamic Evolutionary Events in Diatom Nuclear and Organelle Genomes

Richard Dorrell , Fuhai Liu , Chris Bowler
Angela Falciatore; Thomas Mock. The Molecular Life of Diatoms, Springer International Publishing, pp.147-177, 2022, 978-3-030-92498-0. ⟨10.1007/978-3-030-92499-7_6⟩
Book sections hal-03859168v1
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Biogeographical Patterns and Genomes of Aquatic Photoautotrophs

Juan José Pierella Karlusich , Charlotte Nef , Chris Bowler , Richard G Dorrell
Stephen Christopher Maberly; Brigitte Gontero. Blue Planet, Red and Green Photosynthesis: Productivity and Carbon Cycling in Aquatic Ecosystems, Wiley, 2022, 9781789450828. ⟨10.1002/9781119986782.ch3⟩
Book sections hal-03942752v1

Tara Océans et son flot de données : vers une compréhension multi-échelle de l'écosystème océan

Chris Bowler , Lucie Bittner
Editions CNRS. Les Big Data à découvert, pp.238-239, 2017, 978-2-271-11464-8
Book sections hal-02922390v1

Tara Oceans : de l’odyssée à l’étude systémique de l’océan

Lucie Bittner , Chris Bowler
Editions CNRS. L’Océan à découvert, pp.114- 115, 2017, 978-2-271-11652-9
Book sections hal-02922413v1

Hypometabolism to survive the long polar night in the diatom Fragilariopsis cylindrus

Nathalie Joli , Lorenzo Concia , Karel Mocaer , Julie Guterman , Juliette Laude
2023
Preprints, Working Papers, ... hal-04268690v1
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Genome-scale community modelling reveals conserved metabolic cross-feedings in epipelagic bacterioplankton communities

Nils Giordano , Marinna Gaudin , Camille Trottier , Erwan Delage , Charlotte Nef
2023
Preprints, Working Papers, ... hal-04284803v1
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From genome wide SNPs to genomic islands of differentiation: the quest for species diagnostic markers in two scleractinian corals,PocilloporaandPorites

Romane Deshuraud , Alexandre Ottaviani , Julie Poulain , Marine Leprêtre , Odette Beluche
2023
Preprints, Working Papers, ... hal-04195332v1

Diatom phytochromes integrate the entire visible light spectra for photosensing in marine environments

Carole Duchêne , Jean-Pierre Bouly , Juan José Pierella Karlusich , Julien Sellés , Benjamin Bailleul
2023
Preprints, Working Papers, ... hal-04016944v1

Towards modeling genome-scale knowledge in the global ocean

Antoine Régimbeau , Olivier Aumont , Chris Bowler , Lionel Guidi , George Jackson
2023
Preprints, Working Papers, ... hal-04316033v1

Changes in functional composition and gene expression in eukaryotic plankton at the Atlantic-Arctic Polar front

Paul Frémont , Corinne da Silva , Lucia Campese , Émilie Villar , Achal Rastogi
2023
Preprints, Working Papers, ... hal-04328288v1
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Global observation of plankton communities from space

Hiroto Kaneko , Hisashi Endo , Nicolas Henry , Cédric Berney , Frédéric Mahé
2022
Preprints, Working Papers, ... hal-03855690v1
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Integrative omics framework for characterization of coral reef ecosystems from the Tara Pacific expedition

Caroline Belser , Julie Poulain , Karine Labadie , Frederick Gavory , Adriana Alberti
2022
Preprints, Working Papers, ... cea-03713370v2

Endogenous viral elements reveal associations between a non-retroviral RNA virus and symbiotic dinoflagellate genomes

Alex Veglia , Kalia S.I. Bistolas , Christian Voolstra , Benjamin Hume , Serge Planes
2022
Preprints, Working Papers, ... hal-03854759v1
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A Plastidial Glycolytic-Gluconeogenic Switch of Mitochondrial Origin Enables Diatom Adaptations to High Latitudes

Richard Dorrell , Yue Liang , Nolwenn Gueguen , Tomomi Nonoyama , Youjun Zhang
2022
Preprints, Working Papers, ... hal-03859122v1
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Divergent and diversified proteome content across a serially acquired plastid lineage

Anna M G Novák Vanclová , Charlotte Nef , Adél Vancl , Fuhai Liu , Zoltán Füssy
2022
Preprints, Working Papers, ... hal-03913495v1
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Insights into biotic and abiotic modulation of ocean mesopelagic communities

Janaina Rigonato , Marko Budinich , Alejandro Murillo , Manoela Brandão , Juan Karlusich
2022
Preprints, Working Papers, ... hal-03166899v1
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Linking satellites to genes with machine learning to estimate major phytoplankton groups from space

Roy El Hourany , Juan Pierella Karlusich , Lucie Zinger , Hubert Loisel , Marina Lévy
2022
Preprints, Working Papers, ... hal-03897696v1
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Histone H1 protects telomeric repeats from H3K27me3 invasion in Arabidopsis

Gianluca Teano , Lorenzo Concia , Léopold Carron , Léa Wolff , Kateřina Adamusová
2021
Preprints, Working Papers, ... hal-03099675v1

Evolutionary analysis of DNA methyltransferases in microeukaryotes: Insights from the model diatom Phaeodactylum tricornutum

Antoine Hoguin , Ouardia Ait Mohamed , Chris Bowler , Auguste Genovesio , Fabio Rocha Jimenez Vieira
2021
Preprints, Working Papers, ... hal-03374155v1

Contribution of genome scale metabolic modeling to niche theory

Antoine Régimbeau , Marko Budinich , Abdelhalim Larhlimi , Juan Jose Pierella Karlusich , Olivier Aumont
2021
Preprints, Working Papers, ... hal-03352833v1

Environmental vulnerability of the global ocean plankton community interactome

S. Chaffron , E. Delage , M. Budinich , D. Vintache , N. Henry
2020
Preprints, Working Papers, ... hal-03971893v1
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Ecogenomics of key prokaryotes in the arctic ocean

Marta Royo-Llonch , Pablo Sánchez , Clara Ruiz-González , Guillem Salazar , Carlos Pedrós-Alió
2020
Preprints, Working Papers, ... hal-02946895v1
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H3K27me3 natural variation selectively marks genes predicted to be important for differentiation in unicellular algae

Xue Zhao , Achal Rastogi , Anne Flore Deton Cabanillas , Ouardia Ait Mohamed , Catherine Cantrel
2020
Preprints, Working Papers, ... hal-02998293v1