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Simulation-based inference for non-parametric statistical comparison of biomolecule dynamics

Hippolyte Verdier , François Laurent , Alhassan Cassé , Christian L. Vestergaard , Christian Specht
PLoS Computational Biology, 2023, 19 (2), pp.e1010088. ⟨10.1371/journal.pcbi.1010088⟩
Journal articles hal-03876446v2
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TRamWAy: mapping physical properties of individual biomolecule random motion in large-scale single-particle tracking experiments

François Laurent , Hippolyte Verdier , Maxime Duval , Alexander Serov , Christian L Vestergaard
Bioinformatics, 2022, 38 (11), pp.3149-3150. ⟨10.1093/bioinformatics/btac291⟩
Journal articles pasteur-03695448v1

Hematopoietic stem cell transplantation chemotherapy causes microglia senescence and peripheral macrophage engraftment in the brain

Kurt A Sailor , George Agoranos , Sergio López-Manzaneda , Satoru Tada , Beatrix Gillet-Legrand
Nature Medicine, 2022, ⟨10.1038/s41591-022-01691-9⟩
Journal articles pasteur-03588683v1
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Randomized reference models for temporal networks

Laetitia Gauvin , Mathieu Génois , Marton Karsai , Mikko Kivelä , Taro Takaguchi
SIAM Review, 2022, 64 (4), ⟨10.1137/19M1242252⟩
Journal articles hal-01817633v4
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Learning physical properties of anomalous random walks using graph neural networks

Hippolyte Verdier , Maxime Duval , François Laurent , Alhassan Cassé , Christian L. Vestergaard
Journal of Physics A: Mathematical and Theoretical, 2021, 54, pp.234001
Journal articles pasteur-03150190v2
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Mapping spatio-temporal dynamics of single biomolecules in living cells

François Laurent , Charlotte Floderer , Cyril Favard , Delphine Muriaux , Jean-Baptiste Masson
Physical Biology, 2020, 17 (1), pp.015003. ⟨10.1088/1478-3975/ab5167⟩
Journal articles pasteur-02408362v1
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Statistical Tests for Force Inference in Heterogeneous Environments

Alexander S Serov , François Laurent , Charlotte Floderer , Karen Perronet , Cyril Favard
Scientific Reports, 2020, 10 (1), pp.3783. ⟨10.1038/s41598-020-60220-1⟩
Journal articles pasteur-02865729v1
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Single-particle trajectories reveal two-state diffusion-kinetics of hOGG1 proteins on DNA

Christian L. Vestergaard , Paul C Blainey , Henrik Flyvbjerg
Nucleic Acids Research, 2018, pp.gky004. ⟨10.1093/nar/gky004⟩
Journal articles hal-01690314v1
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Transition state theory demonstrated at the micron scale with out-of-equilibrium transport in a confined environment

Christian L. Vestergaard , Morten Bo Mikkelsen , Walter Reisner , Anders Kristensen , Henrik Flyvbjerg
Nature Communications, 2016, 7, pp.10227. ⟨10.1038/ncomms10227⟩
Journal articles hal-01257781v1

Impact of spatially constrained sampling of temporal contact networks on the evaluation of the epidemic risk

Christian L. Vestergaard , Eugenio Valdano , Mathieu Génois , Chiara Poletto , Vittoria Colizza
European Journal of Applied Mathematics, 2016, 27 (6), pp.941-957. ⟨10.1017/S0956792516000309⟩
Journal articles hal-01342800v1
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Évaluer le risque épidémique à partir de données lacunaires

Mathieu Génois , Christian L. Vestergaard , Alain Barrat
Médecine/Sciences, 2016, 32 (5), pp.506. ⟨10.1051/medsci/20163205019⟩
Journal articles hal-01435397v1
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Recalibrating disease parameters for increasing realism in modeling epidemics in closed settings

Livio Bioglio , Mathieu Génois , Christian L. Vestergaard , Chiara Poletto , Alain Barrat
BMC Infectious Diseases, 2016, 16 (1), pp.676. ⟨10.1186/s12879-016-2003-3⟩
Journal articles inserm-01396695v1
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Optimizing experimental parameters for tracking of diffusing particles

Christian L. Vestergaard
Physical Review E , 2016, 94 (2), pp.022401. ⟨10.1103/PhysRevE.94.022401⟩
Journal articles hal-01144950v2
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Compensating for population sampling in simulations of epidemic spread on temporal contact networks

Mathieu Génois , Christian L. Vestergaard , Ciro Cattuto , Alain Barrat
Nature Communications, 2015, 6, pp.8860
Journal articles hal-01131855v1

Estimation of motility parameters from trajectory data

Christian L. Vestergaard , Jonas N. Pedersen , Kim I. Mortensen , Henrik Flyvbjerg
The European Physical Journal. Special Topics, 2015, 224 (7), pp.1151-1168. ⟨10.1140/epjst/e2015-02452-5⟩
Journal articles hal-01212510v1
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Data on face-to-face contacts in an office building suggests a low-cost vaccination strategy based on community linkers

Mathieu Génois , Christian L. Vestergaard , Julie Fournet , André Panisson , Isabelle Bonmarin
Network Science, 2015, 3 (3), pp.326-347. ⟨10.1017/nws.2015.10⟩
Journal articles hal-01113431v1
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Temporal Gillespie algorithm: Fast simulation of contagion processes on time-varying networks

Christian L. Vestergaard , Mathieu Génois
PLoS Computational Biology, 2015, 11 (10), pp.e1004579. ⟨10.1371/journal.pcbi.1004579⟩
Journal articles hal-01140134v2
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Harmonic force spectroscopy measures load-dependent kinetics of individual human b-cardiac myosin molecules

Jongmin Sung , Suman Nag , Kim I. Mortensen , Christian L. Vestergaard , Shirley Sutton
Nature Communications, 2015, 6, pp.7931. ⟨10.1038/ncomms8931⟩
Journal articles hal-01190174v1
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How memory generates heterogeneous dynamics in temporal networks

Christian L. Vestergaard , Mathieu Génois , Alain Barrat
Physical Review E : Statistical, Nonlinear, and Soft Matter Physics, 2014, 90 (4), pp.042805. ⟨10.1103/PhysRevE.90.042805⟩
Journal articles hal-01061650v1
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Gillespie Algorithms for Stochastic Multiagent Dynamics in Populations and Networks

Naoki Masuda , Christian L. Vestergaard
Cambridge University Press, 2022, Cambridge Elements: The Structure and Dynamics of Complex Networks, Guido Caldarelli, 978-1-009-23915-8 (ebook). ⟨10.1017/9781009239158⟩
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