Christophe BOTELLA

Publications

Article dans une revue (17)

Cascading predictions from common to uncommon species improves species distribution models for plants Jiexun Xu,Kimberly Low,Christophe Botella,Benjamin Deneu,Dennis Shashaet al. Ecological Informatics, 2026, 93, pp.103424. ⟨10.1016/j.ecoinf.2025.103424⟩ Article dans une revue hal-05457107v1
Applying the maximum entropy principle to neural networks enhances multi-species distribution models Maxime Ryckewaert,Diego Marcos,Christophe Botella,Maximilien Servajean,Pierre Bonnetet al. Methods in Ecology and Evolution, 2026, pp.1-16. ⟨10.1111/2041-210x.70262⟩ Article dans une revue hal-05446820v1
Mapping potential environmental impacts of alien species in the face of climate change Sabrina Kumschick,Lysandre Journiac,Océane Boulesnane-Genguant,Christophe Botella,Robin Pouteauet al. Biological Invasions, 2025, 27 (1), pp.43. ⟨10.1007/s10530-024-03490-4⟩ Article dans une revue hal-04866133v1
Adapting a global plant identification model to detect invasive alien plant species in high-resolution road side images Vincent Espitalier,Jean-Christophe Lombardo,Hervé Goëau,Christophe Botella,Toke Thomas Høyeet al. Ecological Informatics, 2025, 89, pp.103129. ⟨10.1016/j.ecoinf.2025.103129⟩ Article dans une revue hal-05046527v1
Citizen science platforms can effectively support early detection of invasive alien species according to species traits Pablo González‐moreno,Ana A. Anđelković,Tim Adriaens,Christophe Botella,Jakovos Demetriouet al. People and Nature, 2024, 7 (1), pp.278-294. ⟨10.1002/pan3.10767⟩ Article dans une revue hal-05447326v1
Land‐use intensity influences European tetrapod food webs Christophe Botella,Pierre Gaüzère,Louise O'Connor,Marc Ohlmann,Julien Renaudet al. Global Change Biology, 2024, 30 (2), ⟨10.1111/gcb.17167⟩ Article dans une revue hal-04757075v1
Don't bite the hand that feeds you: Meta food webs help in the face of the Eltonian shortfall Christophe Botella,Pierre Gaüzère,Louise O'Connor,Julien Renaud,Yue Douet al. Global Change Biology, 2024, 30 (6), pp.e17359. ⟨10.1111/gcb.17359⟩ Article dans une revue hal-04757080v1
Life Science Workflow Services (LifeSWS): motivations and architecture Reza Akbarinia,Christophe Botella,Alexis Joly,Florent Masseglia,Marta Mattosoet al. Transactions on Large-Scale Data- and Knowledge-Centered Systems, 2023, Lecture Notes in Computer Science, 14280, pp.1-24. ⟨10.1007/978-3-662-68100-8_1⟩ Article dans une revue lirmm-04173545v1
Dissimilarity of vertebrate trophic interactions reveals spatial uniqueness but functional redundancy across Europe Pierre Gaüzère,Christophe Botella,Giovanni Poggiato,Louise M.J. O'Connor,Moreno Di Marcoet al. Current Biology, 2023, 33 (23), pp.5263-5271. ⟨10.1016/j.cub.2023.10.069⟩ Article dans une revue lirmm-04696017v1
Synergizing Digital, Biological, and Participatory Sciences for Global Plant Species Identification: Enabling access to a worldwide identification service Pierre Bonnet,Antoine Affouard,Jean-Christophe Lombardo,Mathias Chouet,Hugo Gresseet al. Biodiversity Information Science and Standards, 2023, 7, pp.e112545. ⟨10.3897/biss.7.112545⟩ Article dans une revue hal-04430929v1
Dynamic Species Distribution Modeling Reveals the Pivotal Role of Human-Mediated Long-Distance Dispersal in Plant Invasion Christophe Botella,Pierre Bonnet,Cang Hui,Alexis Joly,David M. Richardson Biology, 2022, 11 (9), pp.1293. ⟨10.3390/biology11091293⟩ Article dans une revue hal-03771760v1
The diversity of biotic interactions complements functional and phylogenetic facets of biodiversity Pierre Gaüzère,Louise O’connor,Christophe Botella,Giovanni Poggiato,Tamara Münkemülleret al. Current Biology, 2022, 32 (9), pp.2093-2100.e3. ⟨10.1016/j.cub.2022.03.009⟩ Article dans une revue hal-03750719v1
An appraisal of graph embeddings for comparing trophic network architectures Christophe Botella,Stéphane Dray,Catherine Matias,Vincent Miele,Wilfried Thuiller Methods in Ecology and Evolution, 2022, 13 (1), pp.203-216. ⟨10.1111/2041-210X.13738⟩ Article dans une revue hal-03191630v2
Convolutional neural networks improve species distribution modelling by capturing the spatial structure of the environment Benjamin Deneu,Maximilien Servajean,Pierre Bonnet,Christophe Botella,François Munozet al. PLoS Computational Biology, 2021, 17 (4), pp.e1008856. ⟨10.1371/journal.pcbi.1008856⟩ Article dans une revue hal-03220977v1
Jointly estimating spatial sampling effort and habitat suitability for multiple species from opportunistic presence‐only data Christophe Botella,Alexis Joly,Pierre Bonnet,François Munoz,Pascal Monestiez Methods in Ecology and Evolution, 2021, 12 (5), pp.933-945. ⟨10.1111/2041-210X.13565⟩ Article dans une revue hal-03150701v1
Bias in presence-only niche models related to sampling effort and species niches: Lessons for background point selection Christophe Botella,Alexis Joly,Pascal Monestiez,Pierre Bonnet,François Munoz PLoS ONE, 2020, 15 (5), pp.e0232078. ⟨10.1371/journal.pone.0232078⟩ Article dans une revue hal-02639237v1
Species distribution modeling based on the automated identification of citizen observations Christophe Botella,Alexis Joly,Pierre Bonnet,Pascal P. Monestiez,François Munoz Applications in Plant Sciences, 2018, Green Digitization: Online Botanical Collections Data Answering Real‐World Questions, 6 (2), pp.1-11. ⟨10.1002/aps3.1029⟩ Article dans une revue hal-01739481v1

Communication dans un congrès (21)

LifeCLEF 2025 Teaser: Challenges on Species Presence Prediction and Identification, and Individual Animal Identification Alexis Joly,Lukáš Picek,Stefan Kahl,Hervé Goëau,Lukáš Adamet al. 47. European Conference on Information Retrieval - ECIR 2025, Apr 2025, Lucca, Italy. pp.373-381, ⟨10.1007/978-3-031-88720-8_57⟩ Communication dans un congrès hal-05135815v1
GeoPlant: Spatial Plant Species Prediction Dataset Lukáš Picek,Christophe Botella,Maximilien Servajean,César Leblanc,Rémi Palardet al. 38. Conference on Neural Information Processing Systems, NeurIPS 2024, Dec 2024, Vancouver, Canada Communication dans un congrès hal-04852083v1
Overview of GeoLifeCLEF 2024: Species Composition Prediction with High Spatial Resolution at Continental Scale using Remote Sensing Lukáš Picek,Christophe Botella,Maximilien Servajean,César Leblanc,Rémi Palardet al. 15. Conference and Labs of the Evaluation Forum (CLEF 2024), Sep 2024, Grenoble, France. pp.1966-1977 Communication dans un congrès hal-04720817v1
Overview of LifeCLEF 2024 Teaser : Challenges on Species Distribution Prediction and Identification Alexis Joly,Lukáš Picek,Stefan Kahl,Hervé Goëau,Vincent Espitalieret al. ECIR 2024 - 46. European Conference on Information Retrieval, Mar 2024, Glasgow, United Kingdom. pp.19-27, ⟨10.1007/978-3-031-56072-9_3⟩ Communication dans un congrès hal-04667635v1
Overview of LifeCLEF 2024: Challenges on Species Distribution Prediction and Identification Alexis Joly,Lukáš Picek,Stefan Kahl,Hervé Goëau,Vincent Espitalieret al. 15. Conference and Labs of the Evaluation Forum (CLEF 2024), Sep 2024, Grenoble, France. pp.183-207, ⟨10.1007/978-3-031-71908-0_9⟩ Communication dans un congrès hal-04830385v1
Overview of LifeCLEF 2023: evaluation of AI models for the identification and prediction of birds, plants, snakes and fungi Alexis Joly,Christophe Botella,Lukáš Picek,Stefan Kahl,Hervé Goëauet al. 24. Conference and Labs of the Evaluation Forum (CLEF-WN 2023), Sep 2023, Thessaloniki, Greece. pp.416-439, ⟨10.1007/978-3-031-42448-9_27⟩ Communication dans un congrès hal-04322219v1
Overview of GeoLifeCLEF 2023: Species Composition Prediction with High Spatial Resolution at Continental Scale Using Remote Sensing Christophe Botella,Benjamin Deneu,Diego Marcos,Maximilien Servajean,Théo Larcheret al. 24. Conference and Labs of the Evaluation Forum (CLEF-WN 2023), Sep 2023, Thessaloniki, Greece. pp.1954-1971 Communication dans un congrès hal-04322255v1
LifeCLEF 2023 teaser: Species Identification and Prediction Challenges Alexis Joly,Stefan Kahl,Lukáš Picek,Christophe Botella,Diego Marcoset al. ECIR 2023 - 45. European Conference on Information Retrieval, Jaap Kamps; Lorraine Goeuriot; Fabio Crestani; Maria Maistro; Hideo Joho; Brian Davis; Cathal Gurrin; Udo Kruschwitz; Annalina Caputo, Apr 2023, Dublin, Ireland. pp.568-576, ⟨10.1007/978-3-031-28241-6_65⟩ Communication dans un congrès hal-04204378v1
LifeCLEF 2020 Teaser: Biodiversity Identification and Prediction Challenges Alexis Joly,Hervé Goëau,Christophe Botella,Rafael Ruiz de Castaneda,Hervé Glotinet al. ECIR 2020 - 42nd European Conference on IR Research on Advances in Information Retrieval, Apr 2020, Lisboa, Portugal. pp.542-549, ⟨10.1007/978-3-030-45442-5_70⟩ Communication dans un congrès hal-02873670v1
GeoLifeCLEF, a cooperative evaluation campaign for species distribution methods Christophe Botella International Statistical Ecology Conference (ISEC) 2020, Jun 2020, Syndey, Australia Communication dans un congrès hal-04987047v1
Overview of LifeCLEF location-based species prediction task 2020 (GeoLifeCLEF) Benjamin Deneu,Titouan Lorieul,Elijah Cole,Maximilien Servajean,Christophe Botellaet al. CLEF 2020 - Conference and Labs of the Evaluation Forum, Sep 2020, Thessaloniki, Greece Communication dans un congrès hal-02989077v1
Overview of LifeCLEF 2020: A System-Oriented Evaluation of Automated Species Identification and Species Distribution Prediction Alexis Joly,Hervé Goëau,Stefan Kahl,Benjamin Deneu,Willem-Pier Vellingaet al. CLEF 2020 - 11. International Conference of the Cross-Language Evaluation Forum for European Languages, Sep 2020, Thessaloniki, Greece. pp.342-363, ⟨10.1007/978-3-030-58219-7_23⟩ Communication dans un congrès hal-02945382v1
Overview of LifeCLEF 2019: Identification of Amazonian Plants, South & North American Birds, and Niche Prediction Alexis Joly,Hervé Goëau,Christophe Botella,Stefan Kahl,Maximilien Servajeanet al. CLEF 2019 - 10th International Conference of the Cross-Language Evaluation Forum for European Languages, Sep 2019, Lugano, Switzerland. pp.387-401, ⟨10.1007/978-3-030-28577-7_29⟩ Communication dans un congrès hal-02281455v1
Overview of GeoLifeCLEF 2019: plant species prediction using environment and animal occurrences Christophe Botella,Maximilien Servajean,Pierre Bonnet,Alexis Joly Conference and Labs of the Evaluation Forum (CLEF 2019), Sep 2019, Lugano, Switzerland Communication dans un congrès hal-02190170v1
LifeCLEF 2019: Biodiversity Identification and Prediction Challenges Alexis Joly,Hervé Goëau,Christophe Botella,Stefan Kahl,Marion Poupardet al. ECIR 2019 - 41st European Conference on IR Research, Apr 2019, Cologne, Germany. pp.275-282, ⟨10.1007/978-3-030-15719-7_37⟩ Communication dans un congrès hal-02273257v1
A new multi-species method to correct for sampling bias in presence only niche models, and its application to Pl@ntNet citizen science data in France Christophe Botella,Alexis Joly,Pierre Bonnet,François Munoz,Pascal Monestiez ESA 2019 - Annual Meeting of the Ecological Society of America, Aug 2019, Louisville, United States Communication dans un congrès hal-03261122v1
Species recommendation using intensity models and sampling bias correction (GeoLifeCLEF2019: Lof of Lof team) Pascal Monestiez,Christophe Botella CLEF 2019: Conference and Labs of the Evaluation Forum, Sep 2019, Lugano, Switzerland. pp.1-8 Communication dans un congrès hal-02288944v1
Evaluation of Deep Species Distribution Models using Environment and Co-occurrences Benjamin Deneu,Maximilien Servajean,Christophe Botella,Alexis Joly CLEF 2019 - 10th International Conference of the Cross-Language Evaluation Forum for European Languages, Sep 2019, Lugano, Switzerland. pp.213-225, ⟨10.1007/978-3-030-28577-7_18⟩ Communication dans un congrès hal-02290310v1
Overview of GeoLifeCLEF 2018: location-based species recommendation Christophe Botella,Pierre Bonnet,François Munoz,Pascal P. Monestiez,Alexis Joly CLEF 2018 - Conference and Labs of the Evaluation Forum, Sep 2018, Avignon, France Communication dans un congrès hal-01913238v1
Overview of LifeCLEF 2018: A Large-Scale Evaluation of Species Identification and Recommendation Algorithms in the Era of AI Alexis Joly,Hervé Goëau,Christophe Botella,Hervé Glotin,Pierre Bonnetet al. CLEF 2018 - 9th International Conference of the Cross-Language Evaluation Forum for European Languages, Sep 2018, Avignon, France. pp.247-266, ⟨10.1007/978-3-319-98932-7_24⟩ Communication dans un congrès hal-01913231v1
Location-based species recommendation using co-occurrences and environment- GeoLifeCLEF 2018 challenge Benjamin Deneu,Maximilien Servajean,Christophe Botella,Alexis Joly CLEF 2018 - Conference and Labs of the Evaluation Forum, Sep 2018, Avignon, France Communication dans un congrès hal-01913241v1

Pré-publication, Document de travail (2)

The GeoLifeCLEF 2023 Dataset to evaluate plant species distribution models at high spatial resolution across Europe Christophe Botella,Benjamin Deneu,Diego Marcos,Maximilien Servajean,Joaquim Estopinanet al. 2023 Pré-publication, Document de travail hal-04152362v1
The GeoLifeCLEF 2020 Dataset Elijah Cole,Benjamin Deneu,Titouan Lorieul,Maximilien Servajean,Christophe Botellaet al. 2020 Pré-publication, Document de travail hal-02989062v1

Chapitre d'ouvrage (2)

Les citoyens, sentinelles de la surveillance phytosanitaire ? Jean‐Claude Streito,Julien Papaïx,Marguerite Chartrois,Christophe Botella,Eric Pierreet al. Christian Lannou; Jean-Yves Rasplus; Samuel Soubeyrand; Mathieu Gautier; Jean-Pierre Rossi. Crises sanitaires en agriculture. Les espèces invasives sous surveillance, Editions Quae, pp.151-163, 2023, 978-2-7592-3482-0 Chapitre d'ouvrage hal-03962125v1
A deep learning approach to Species Distribution Modelling Christophe Botella,Alexis Joly,Pierre Bonnet,Pascal Monestiez,François Munoz Alexis Joly; Stefanos Vrochidis; Kostas Karatzas; Ari Karppinen; Pierre Bonnet. Multimedia Tools and Applications for Environmental & Biodiversity Informatics, Springer, pp.169-199, 2018, Multimedia Systems and Applications Series, 978-3-319-76444-3. ⟨10.1007/978-3-319-76445-0_10⟩ Chapitre d'ouvrage hal-01834227v1

Thèse (1)

Statistical methods for modelling the spatial distribution of plant species from large masses of uncertain occurrences from citizen science programs Christophe Botella Statistics [math.ST]. Université Montpellier, 2019. English. ⟨NNT : 2019MONTS135⟩ Thèse tel-02519161v3