Christophe BOTELLA

39
Documents

Publications

Publications

Adapting a global plant identification model to detect invasive alien plant species in high-resolution road side images

Vincent Espitalier , Jean-Christophe Lombardo , Hervé Goëau , Christophe Botella , Toke Thomas Høye et al.
Ecological Informatics, 2025, 89, pp.103129. ⟨10.1016/j.ecoinf.2025.103129⟩
Article dans une revue hal-05046527 v1
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Mapping potential environmental impacts of alien species in the face of climate change

Sabrina Kumschick , Lysandre Journiac , Océane Boulesnane-Genguant , Christophe Botella , Robin Pouteau et al.
Biological Invasions, 2025, 27 (1), pp.43. ⟨10.1007/s10530-024-03490-4⟩
Article dans une revue hal-04866133 v1

Don't bite the hand that feeds you: Meta food webs help in the face of the Eltonian shortfall

Christophe Botella , Pierre Gaüzère , Louise O'Connor , Julien Renaud , Yue Dou et al.
Global Change Biology, 2024, 30 (6), pp.e17359. ⟨10.1111/gcb.17359⟩
Article dans une revue hal-04757080 v1
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Land‐use intensity influences European tetrapod food webs

Christophe Botella , Pierre Gaüzère , Louise O'Connor , Marc Ohlmann , Julien Renaud et al.
Global Change Biology, 2024, 30 (2), ⟨10.1111/gcb.17167⟩
Article dans une revue hal-04757075 v1
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Life Science Workflow Services (LifeSWS): motivations and architecture

Reza Akbarinia , Christophe Botella , Alexis Joly , Florent Masseglia , Marta Mattoso et al.
Transactions on Large-Scale Data- and Knowledge-Centered Systems, 2023, 14280, pp.1-24. ⟨10.1007/978-3-662-68100-8_1⟩
Article dans une revue lirmm-04173545 v1

Dissimilarity of vertebrate trophic interactions reveals spatial uniqueness but functional redundancy across Europe

Pierre Gaüzère , Christophe Botella , Giovanni Poggiato , Louise M.J. O'Connor , Moreno Di Marco et al.
Current Biology, 2023, 33 (23), pp.5263-5271. ⟨10.1016/j.cub.2023.10.069⟩
Article dans une revue lirmm-04696017 v1
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Synergizing Digital, Biological, and Participatory Sciences for Global Plant Species Identification: Enabling access to a worldwide identification service

Pierre Bonnet , Antoine Affouard , Jean-Christophe Lombardo , Mathias Chouet , Hugo Gresse et al.
Biodiversity Information Science and Standards, 2023, 7, pp.e112545. ⟨10.3897/biss.7.112545⟩
Article dans une revue hal-04430929 v1
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Dynamic Species Distribution Modeling Reveals the Pivotal Role of Human-Mediated Long-Distance Dispersal in Plant Invasion

Christophe Botella , Pierre Bonnet , Cang Hui , Alexis Joly , David M. Richardson
Biology, 2022, 11 (9), pp.1293. ⟨10.3390/biology11091293⟩
Article dans une revue hal-03771760 v1
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An appraisal of graph embeddings for comparing trophic network architectures

Christophe Botella , Stéphane Dray , Catherine Matias , Vincent Miele , Wilfried Thuiller
Methods in Ecology and Evolution, 2022, 13 (1), pp.203-216. ⟨10.1111/2041-210X.13738⟩
Article dans une revue hal-03191630 v2
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The diversity of biotic interactions complements functional and phylogenetic facets of biodiversity

Pierre Gaüzère , Louise O’connor , Christophe Botella , Giovanni Poggiato , Tamara Münkemüller et al.
Current Biology, 2022, 32 (9), pp.2093-2100.e3. ⟨10.1016/j.cub.2022.03.009⟩
Article dans une revue hal-03750719 v1
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Convolutional neural networks improve species distribution modelling by capturing the spatial structure of the environment

Benjamin Deneu , Maximilien Servajean , Pierre Bonnet , Christophe Botella , François Munoz et al.
PLoS Computational Biology, 2021, 17 (4), pp.e1008856. ⟨10.1371/journal.pcbi.1008856⟩
Article dans une revue hal-03220977 v1
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Jointly estimating spatial sampling effort and habitat suitability for multiple species from opportunistic presence‐only data

Christophe Botella , Alexis Joly , Pierre Bonnet , François Munoz , Pascal Monestiez
Methods in Ecology and Evolution, 2021, 12 (5), pp.933-945. ⟨10.1111/2041-210X.13565⟩
Article dans une revue hal-03150701 v1
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Bias in presence-only niche models related to sampling effort and species niches: Lessons for background point selection

Christophe Botella , Alexis Joly , Pascal Monestiez , Pierre Bonnet , François Munoz
PLoS ONE, 2020, 15 (5), pp.e0232078. ⟨10.1371/journal.pone.0232078⟩
Article dans une revue hal-02639237 v1
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Species distribution modeling based on the automated identification of citizen observations

Christophe Botella , Alexis Joly , Pierre Bonnet , Pascal P. Monestiez , François Munoz
Applications in Plant Sciences, 2018, Green Digitization: Online Botanical Collections Data Answering Real‐World Questions, 6 (2), pp.1-11. ⟨10.1002/aps3.1029⟩
Article dans une revue hal-01739481 v1
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Overview of GeoLifeCLEF 2024: Species Composition Prediction with High Spatial Resolution at Continental Scale using Remote Sensing

Lukáš Picek , Christophe Botella , Maximilien Servajean , César Leblanc , Rémi Palard et al.
CLEF 2024 Working Notes - 25. Conference and Labs of the Evaluation Forum, Sep 2024, Grenoble, France. pp.1966-1977
Communication dans un congrès hal-04720817 v1

GeoPlant: Spatial Plant Species Prediction Dataset

Lukáš Picek , Christophe Botella , Maximilien Servajean , César Leblanc , Rémi Palard et al.
NeurIPS 2024 - 38th Annual Conference on Neural Information Processing Systems, Dec 2024, Vancouver, Canada
Communication dans un congrès hal-04852083 v1
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Overview of LifeCLEF 2024 Teaser : Challenges on Species Distribution Prediction and Identification

Alexis Joly , Lukáš Picek , Stefan Kahl , Hervé Goëau , Vincent Espitalier et al.
ECIR 2024 - 46. European Conference on Information Retrieval, Mar 2024, Glasgow, United Kingdom. pp.19-27, ⟨10.1007/978-3-031-56072-9_3⟩
Communication dans un congrès hal-04667635 v1
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Overview of LifeCLEF 2024: Challenges on Species Distribution Prediction and Identification

Alexis Joly , Lukáš Picek , Stefan Kahl , Hervé Goëau , Vincent Espitalier et al.
CLEF 2024 - 15th International Conference of the Cross-Language Evaluation Forum for European Languages, Sep 2024, Grenoble, France. pp.183-207, ⟨10.1007/978-3-031-71908-0_9⟩
Communication dans un congrès hal-04830385 v1
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Overview of LifeCLEF 2023: evaluation of AI models for the identification and prediction of birds, plants, snakes and fungi

Alexis Joly , Christophe Botella , Lukáš Picek , Stefan Kahl , Hervé Goëau et al.
CLEF 2023 - 14th International Conference of the Cross-Language Evaluation Forum for European Languages, Sep 2023, Thessalokini, Greece. pp.416-439, ⟨10.1007/978-3-031-42448-9_27⟩
Communication dans un congrès hal-04322219 v1
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Overview of GeoLifeCLEF 2023: Species Composition Prediction with High Spatial Resolution at Continental Scale Using Remote Sensing

Christophe Botella , Benjamin Deneu , Diego Marcos , Maximilien Servajean , Théo Larcher et al.
CLEF 2023 Working Notes - 24th Conference and Labs of the Evaluation Forum, Sep 2023, Thessalokini, Greece. pp.1954-1971
Communication dans un congrès hal-04322255 v1
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LifeCLEF 2023 teaser: Species Identification and Prediction Challenges

Alexis Joly , Stefan Kahl , Lukáš Picek , Christophe Botella , Diego Marcos et al.
ECIR 2023 - 45th European Conference on Information Retrieval, Jaap Kamps; Lorraine Goeuriot; Fabio Crestani; Maria Maistro; Hideo Joho; Brian Davis; Cathal Gurrin; Udo Kruschwitz; Annalina Caputo, Apr 2023, Dublin, Ireland. pp.568-576, ⟨10.1007/978-3-031-28241-6_65⟩
Communication dans un congrès hal-04204378 v1
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LifeCLEF 2020 Teaser: Biodiversity Identification and Prediction Challenges

Alexis Joly , Hervé Goëau , Christophe Botella , Rafael Ruiz de Castaneda , Hervé Glotin et al.
ECIR 2020 - 42nd European Conference on IR Research on Advances in Information Retrieval, Apr 2020, Lisbon, Portugal. pp.542-549, ⟨10.1007/978-3-030-45442-5_70⟩
Communication dans un congrès hal-02873670 v1
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Overview of LifeCLEF location-based species prediction task 2020 (GeoLifeCLEF)

Benjamin Deneu , Titouan Lorieul , Elijah Cole , Maximilien Servajean , Christophe Botella et al.
CLEF 2020 - Conference and Labs of the Evaluation Forum, Sep 2020, Thessaloniki, Greece
Communication dans un congrès hal-02989077 v1
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Overview of LifeCLEF 2020: A System-Oriented Evaluation of Automated Species Identification and Species Distribution Prediction

Alexis Joly , Hervé Goëau , Stefan Kahl , Benjamin Deneu , Willem-Pier Vellinga et al.
CLEF 2020 - 11th International Conference of the Cross-Language Evaluation Forum for European Languages, Sep 2020, Thessaloniki, Greece. pp.342-363, ⟨10.1007/978-3-030-58219-7_23⟩
Communication dans un congrès hal-02945382 v1

GeoLifeCLEF, a cooperative evaluation campaign for species distribution methods

Christophe Botella
International Statistical Ecology Conference (ISEC) 2020, Jun 2020, Syndey, Australia
Communication dans un congrès hal-04987047 v1
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Species recommendation using intensity models and sampling bias correction (GeoLifeCLEF2019: Lof of Lof team)

Pascal Monestiez , Christophe Botella
CLEF 2019: Conference and Labs of the Evaluation Forum, Sep 2019, Lugano, Switzerland. pp.1-8
Communication dans un congrès hal-02288944 v1
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Evaluation of Deep Species Distribution Models using Environment and Co-occurrences

Benjamin Deneu , Maximilien Servajean , Christophe Botella , Alexis Joly
CLEF 2019 - 10th International Conference of the Cross-Language Evaluation Forum for European Languages, Sep 2019, Lugano, Switzerland. pp.213-225, ⟨10.1007/978-3-030-28577-7_18⟩
Communication dans un congrès hal-02290310 v1
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A new multi-species method to correct for sampling bias in presence only niche models, and its application to Pl@ntNet citizen science data in France

Christophe Botella , Alexis Joly , Pierre Bonnet , François Munoz , Pascal Monestiez
ESA 2019 - Annual Meeting of the Ecological Society of America, Aug 2019, Louisville, United States
Communication dans un congrès hal-03261122 v1
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Overview of LifeCLEF 2019: Identification of Amazonian Plants, South & North American Birds, and Niche Prediction

Alexis Joly , Hervé Goëau , Christophe Botella , Stefan Kahl , Maximilien Servajean et al.
CLEF 2019 - 10th International Conference of the Cross-Language Evaluation Forum for European Languages, Sep 2019, Lugano, Switzerland. pp.387-401, ⟨10.1007/978-3-030-28577-7_29⟩
Communication dans un congrès hal-02281455 v1
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Overview of GeoLifeCLEF 2019: plant species prediction using environment and animal occurrences

Christophe Botella , Maximilien Servajean , Pierre Bonnet , Alexis Joly
CLEF 2019 - Conference and Labs of the Evaluation Forum, Sep 2019, Lugano, Switzerland
Communication dans un congrès hal-02190170 v1
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LifeCLEF 2019: Biodiversity Identification and Prediction Challenges

Alexis Joly , Hervé Goëau , Christophe Botella , Stefan Kahl , Marion Poupard et al.
ECIR 2019 - 41st European Conference on IR Research, Apr 2019, Cologne, Germany. pp.275-282, ⟨10.1007/978-3-030-15719-7_37⟩
Communication dans un congrès hal-02273257 v1
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Overview of GeoLifeCLEF 2018: location-based species recommendation

Christophe Botella , Pierre Bonnet , François Munoz , Pascal P. Monestiez , Alexis Joly
CLEF 2018 - Conference and Labs of the Evaluation Forum, Sep 2018, Avignon, France
Communication dans un congrès hal-01913238 v1
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Overview of LifeCLEF 2018: A Large-Scale Evaluation of Species Identification and Recommendation Algorithms in the Era of AI

Alexis Joly , Hervé Goëau , Christophe Botella , Hervé Glotin , Pierre Bonnet et al.
CLEF 2018 - 9th International Conference of the Cross-Language Evaluation Forum for European Languages, Sep 2018, Avignon, France. pp.247-266, ⟨10.1007/978-3-319-98932-7_24⟩
Communication dans un congrès hal-01913231 v1
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Location-based species recommendation using co-occurrences and environment- GeoLifeCLEF 2018 challenge

Benjamin Deneu , Maximilien Servajean , Christophe Botella , Alexis Joly
CLEF 2018 - Conference and Labs of the Evaluation Forum, Sep 2018, Avignon, France
Communication dans un congrès hal-01913241 v1

Les citoyens, sentinelles de la surveillance phytosanitaire ?

Jean‐Claude Streito , Julien Papaïx , Marguerite Chartrois , Christophe Botella , Eric Pierre et al.
Christian Lannou; Jean-Yves Rasplus; Samuel Soubeyrand; Mathieu Gautier; Jean-Pierre Rossi. Crises sanitaires en agriculture. Les espèces invasives sous surveillance, Editions Quae, pp.151-163, 2023, 978-2-7592-3482-0
Chapitre d'ouvrage hal-03962125 v1
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A deep learning approach to Species Distribution Modelling

Christophe Botella , Alexis Joly , Pierre Bonnet , Pascal Monestiez , François Munoz
Alexis Joly; Stefanos Vrochidis; Kostas Karatzas; Ari Karppinen; Pierre Bonnet. Multimedia Tools and Applications for Environmental & Biodiversity Informatics, Springer, pp.169-199, 2018, Multimedia Systems and Applications Series, 978-3-319-76444-3. ⟨10.1007/978-3-319-76445-0_10⟩
Chapitre d'ouvrage hal-01834227 v1