Access content directly

Christophe Douady



A collaborative backbone resource for comparative studies of subterranean evolution: The World Asellidae database

Nathanaelle Saclier , Louis Duchemin , Lara Konecny-Dupré , Philippe Grison , David Eme
Molecular Ecology Resources, 2023, ⟨10.1111/1755-0998.13882⟩
Journal articles hal-04313500v1
Image document

Microbiome analysis in Lascaux Cave in relation to black stain alterations of rock surfaces and collembola

Lise Alonso , Thomas Pommier , Laurent Simon , Flavien Maucourt , Jeanne Doré
Environmental Microbiology Reports, 2023, 15 (2), pp.80-91. ⟨10.1111/1758-2229.13133⟩
Journal articles hal-04255508v1
Image document

Unique and shared effects of local and catchment predictors over distribution of hyporheic organisms: does the valley rule the stream?

Samuel Mouron , David Eme , Arnaud Bellec , Mélanie Bertrand , Stefano Mammola
Ecography, 2022, 2022 (5), pp.e06099. ⟨10.1111/ecog.06099⟩
Journal articles hal-03616026v1
Image document

Subterranean species inventory in the molecular era

Florian Malard , Héloïse Verdier , Lara Konecny-Dupré , David Eme , Christophe J Douady
Karstologia, 2022
Journal articles hal-03810304v1
Image document

Dispersal limitation by structures is more important than intermittent drying effects for metacommunity dynamics in a highly fragmented river network

Maïlys Gauthier , Guillaume Le Goff , Bertrand Launay , Christophe J Douady , T. Datry
Freshwater Science, 2021, 40 (2), pp.302 - 315. ⟨10.1086/714376⟩
Journal articles hal-03369180v1

Enhancing DNA metabarcoding performance and applicability with bait capture enrichment and DNA from conservative ethanol

Maïlys Gauthier , Lara Konecny-Dupré , Agnès Nguyen , Vasco Elbrecht , T. Datry
Molecular Ecology Resources, 2020, 20 (79-96), pp.79-96. ⟨10.1111/1755-0998.13088⟩
Journal articles hal-02328256v1

Fragmentation promotes the role of dispersal in determining 10 intermittent headwater stream metacommunities

Maïlys Gauthier , Bertrand Launay , Guillaume Le Goff , Herve Pella , Christophe Jean Douady
Freshwater Biology, 2020, 65 (12), pp.2169-2185. ⟨10.1111/fwb.13611⟩
Journal articles hal-03138187v1
Image document

Trophic selectivity in aquatic isopods increases with the availability of resources

Clémentine François , Laurent Simon , Florian Malard , Tristan Lefébure , Christophe Jean Douady
Functional Ecology, 2020, 34, pp.1078-1090. ⟨10.1111/1365-2435.13530⟩
Journal articles hal-02492518v1

GOTIT: A laboratory application software for optimizing multi‐criteria species‐based research

Florian Malard , Philippe Grison , Louis Duchemin , Lara Konecny-Dupré , Tristan Lefébure
Methods in Ecology and Evolution, 2020, 11, pp.159-167. ⟨10.1111/2041-210X.13307⟩
Journal articles hal-02329439v1
Image document

Bedrock radioactivity influences the rate and spectrum of mutation

Nathanaëlle Saclier , Patrick Chardon , Florian Malard , Lara Konecny-Dupré , David Eme
eLife, 2020, 9, pp.e56830. ⟨10.7554/eLife.56830⟩
Journal articles hal-03051267v1

Anthropization level of Lascaux Cave microbiome shown by regional‐scale comparisons of pristine and anthropized caves

Lise Alonso , Thomas Pommier , Bernard Kaufmann , Audrey Dubost , David Chapulliot
Molecular Ecology, 2019, 28 (14), pp.3383-3394. ⟨10.1111/mec.15144⟩
Journal articles hal-02310389v1

Do cryptic species matter in macroecology? Sequencing European groundwater crustaceans yields smaller ranges but does not challenge biodiversity determinants

David Eme , Maja Zagmajster , Teo Delić , Cene Fišer , Jean-François Flot
Ecography, 2018, 41 (2), pp.424 - 436. ⟨10.1111/ecog.02683⟩
Journal articles hal-01731403v1

Disconnection between genetic and morphological diversity in the planktonic foraminifer Neogloboquadrina pachyderma from the Indian sector of the Southern Ocean

Aurore André , Frédéric Quillévéré , Ralf Schiebel , Raphaël Morard , Hélène Howa
Marine Micropaleontology, 2018, 144, pp.14-24. ⟨10.1016/j.marmicro.2018.10.001⟩
Journal articles hal-02152105v1

Life History Traits Impact the Nuclear Rate of Substitution but Not the Mitochondrial Rate in Isopods

Nathanaëlle Saclier , Clémentine François , Lara Konecny-Dupré , Nicolas Lartillot , Laurent Guéguen
Molecular Biology and Evolution, 2018, 35 (12), pp.2900-2912. ⟨10.1093/molbev/msy184⟩
Journal articles hal-01951580v1

Multiple invasions in urbanized landscapes: interactions between the invasive garden ant Lasius neglectus and Japanese knotweeds (Fallopia spp.)

Jérôme Gippet , Florence Piola , Soraya Rouifed , Marie-Rose Viricel , Sara Puijalon
Arthropod-Plant Interactions, 2018, 12 (3), pp.351-360
Journal articles hal-01953973v1

Phylogeny, age structure, growth dynamics and colour pattern of the Salamandra algira algira population in the Edough Massif, northeastern Algeria

Selma Bouzid , Lara Konecny , Odile Grolet , Christophe Jean Douady , Pierre Joly
Amphibia-Reptilia, 2017, 38 (4), pp.461 - 471. ⟨10.1163/15685381-00003127⟩
Journal articles hal-01655714v1

Geomorphic influence on intraspecific genetic differentiation and diversity along hyporheic corridors

Florian Malard , Cécile Capderrey , Benjamin Churcheward , David Eme , Bernard Kaufmann
Freshwater Biology, 2017, 62 (12), pp.1955 - 1970. ⟨10.1111/fwb.13040⟩
Journal articles hal-01723507v1
Image document

Less effective selection leads to larger genomes

Tristan Lefébure , Claire Morvan , Florian Malard , Clémentine François , Lara Konecny-Dupré
Genome Research, 2017, 27, pp.1016-1028. ⟨10.1101/gr.212589.116⟩
Journal articles hal-01544879v2

Trophic ecology of groundwater species reveals specialization in a low-productivity environment

Clémentine François , Florian Mermillod-Blondin , Florian Malard , François Fourel , Christophe Lecuyer
Functional Ecology, 2016, 30, pp.262-273. ⟨10.1111/1365-2435.12484⟩
Journal articles hal-01286189v1
Image document

Methodology for Single-Cell Genetic Analysis of Planktonic Foraminifera for Studies of Protist Diversity and Evolution

Agnès K.M. Weiner , Raphael Morard , Manuel Weinkauf , Kate F. Darling , Aurore Andre
Frontiers in Marine Science, 2016, 3 (255), pp.1-15. ⟨10.3389/fmars.2016.00255⟩
Journal articles hal-01420794v1

No Evidence That Nitrogen Limitation Influences the Elemental Composition of Isopod Transcriptomes and Proteomes

Clémentine François , L. Duret , Laurent Simon , Florian Mermillod-Blondin , Florian Malard
Molecular Biology and Evolution, 2016, 33 (10), pp.2605-2620. ⟨10.1093/molbev/msw131⟩
Journal articles hal-01370129v1

Nomenclature for the Nameless: A Proposal for an Integrative Molecular Taxonomy of Cryptic Diversity Exemplified by Planktonic Foraminifera

Raphael Morard , Gilles Escarguel , Agnès K.M. Weiner , Aurore Andre , Christophe Jean Douady
Systematic Biology, 2016, 65 (5), pp.925-940. ⟨10.1093/sysbio/syw031⟩
Journal articles hal-01368819v1

Mitochondrial genomes reveal the extinct Hippidion as an outgroup to all living equids

Clio Der Sarkissian , Julia Vilstrup , Mikkel Schubert , Andaine Seguin-Orlando , David Eme
Biology Letters, 2015, 11 (20141058), pp.1-5. ⟨10.1098/rsbl.2014.1058⟩
Journal articles hal-01323150v1
Image document

PFR²: a curated database of planktonic Foraminifera18S ribosomal DNA as a resource for studies of plankton ecology, biogeography, and evolution

Raphaël Morard , Kate F Darling , Frédéric Mahé , Stéphane Audic , Yurika Ujiié
Molecular Ecology Resources, 2015, 15 (6), pp.1472-1485. ⟨10.1111/1755-0998.12410⟩
Journal articles hal-01149023v2
Image document

SSU rDNA Divergence in Planktonic Foraminifera: Molecular Taxonomy and Biogeographic Implications

Aurore André , Quillévéré Frédéric , Raphaël Morard , Yurika Ujiié , Gilles Escarguel
PLoS ONE, 2014, 9 (8), pp.e104641. ⟨10.1371/journal.pone.0104641⟩
Journal articles hal-01100608v1

Integrating phylogeography, physiology, and habitat modelling to explore species range déterminants

David Eme , Florian Malard , Céline Colson-Proch , Pauline Jean , Sébastien Calvignac
Journal of Biogeography, 2014, 41, pp.687-699. ⟨10.1111/jbi.12237⟩
Journal articles halsde-00968144v1

Sterols and steroids in a freshwater crustacean (Proasellus meridianus): hormonal response to nutritional input

Nathalie Mondy , Vincent Grossi , Eva Cathalan , Jean-Paul Delbecque , Florian Mermillod-Blondin
Invertebrate Biology, 2014, 133 (1), pp.99-107. ⟨10.1111/ivb.12044⟩
Journal articles halsde-00994953v1

Timetree of aselloidea reveals species diversification dynamics in groundwater

Claire Morvan , Florian Malard , Emmanuel Paradis , Tristan Lefébure , Lara Konecny-Dupré
Systematic Biology, 2013, 62 (4), pp.512-22. ⟨10.1093/sysbio/syt015⟩
Journal articles halsde-00837844v1

Thermal tolerance breadths among groundwater crustaceans living in a thermally constant environment

Florian Mermillod-Blondin , C. Lefour , Lisa Lalouette , David Renault , Florian Malard
Journal of Experimental Biology, 2013, 216 (9), pp.1683-94. ⟨10.1242/jeb.081232⟩
Journal articles halsde-00823715v1

Global scale same-specimen morpho-genetic analysis of Truncorotalia truncatulinoides: a perspective on the morphological species concept in planktonic foraminifera

Frederic Quillevere , Raphaël Morard , Gilles Escarguel , Christophe Jean Douady , Y Ujiie
Palaeogeography, Palaeoclimatology, Palaeoecology, 2013, 391, pp.2-12. ⟨10.1016/j.palaeo.2011.03.013⟩
Journal articles hal-00911466v1

Microsatellite Development and First Population Size Estimates for the Groundwater Isopod Proasellus walteri

Cécile Capderrey , Bernard Kaufmann , Pauline Jean , Florian Malard , Lara Konecny-Dupré
PLoS ONE, 2013, 8 - e76213 (9), pp.1-10. ⟨10.1371/journal.pone.0076213⟩
Journal articles halsde-00876955v1

Bayesian phylogeographic inferences reveal contrasting colonization dynamics among European groundwater isopods

David Eme , Florian Malard , Lara Konecny-Dupré , Tristan Lefébure , Christophe Jean Douady
Molecular Ecology, 2013, 22, pp.5685-5699. ⟨10.1111/mec.12520⟩
Journal articles halsde-00921300v1

The cryptic and the apparent reversed: lack of genetic differentiation within the morphologically diverse plexus of the planktonic foraminifer Globigerinoides sacculifer

Aurore Andre , Agnes Weiner , Frederic Quillevere , Ralf Aurahs , Raphaël Morard
Paleobiology, 2013, 39 (1), pp.21-39. ⟨10.1666/0094-8373-39.1.21⟩
Journal articles hal-00797451v1

Preventing the pollution of mitochondrial datasets with nuclear mitochondrial paralogs (numts)

Sébastien Calvignac , Lara Konecny , Florian Malard , Christophe Jean Douady
Mitochondrion, 2011, 11 (2), pp.246-254. ⟨10.1016/j.mito.2010.10.004⟩
Journal articles halsde-00815371v1

Plant resistance to mechanical stress: evidence of an avoidance-tolerance trade-off

Sara Puijalon , Tjeerd J. Bouma , Christophe Jean Douady , Jon M. van Groenendael , P.R. Anten Niels
New Phytologist, 2011, 191 (4), pp.1141-1149. ⟨10.1111/j.1469-8137.2011.03763.x⟩
Journal articles halsde-00621076v1
Image document

Worldwide Genotyping in the Planktonic Foraminifer Globoconella inflata: Implications for Life History and Paleoceanography

Raphaël Morard , Frederic Quillevere , Christophe Jean Douady , Colomban de Vargas , Thibault de Garidel-Thoron
PLoS ONE, 2011, 6 (10), pp.e26665. ⟨10.1371/journal.pone.0026665⟩
Journal articles hal-00657029v1

Unravelling phylogenetic relationships among regionally co-existing species: Hydropsyche species (Trichoptera: Hydropsychidae) in the Loire River

Bernhard Statzner , Christophe Jean Douady , Lara Konecny , Sylvain Dolédec
Zootaxa, 2010, 2556, pp.51-68
Journal articles halsde-00521281v1

First cellular approach of the effects of global warming on groundwater organisms: a study of the HSP70 gene expression

Céline Colson-Proch , Anne Morales , Frédéric Hervant , Lara Konecny , Colette Moulin
Cell Stress and Chaperones, 2010, 15 (3), pp.259-270. ⟨10.1007/s12192-009-0139-4⟩
Journal articles halsde-00486136v1

A molecular test for cryptic diversity in ground water : how large are the ranges of macro-stygobionts ? In: Freshwater Biology Special Issue, Assessing and Conserving Groundwater Biodiversity (Eds. J. Gibert & D.C. Culver)

Peter Trontelj , Christophe Jean Douady , Cene Fiser , Janine Gibert , Spela Goricki
Freshwater Biology, 2009, 54, pp.727-744. ⟨10.1111/j.1365-2427.2007.01877.x⟩
Journal articles halsde-00378197v1

Do current environmental conditions explain physiological and metabolic responses of subterranean crustaceans to cold ?

Céline Colson-Proch , David Renault , Antoine Gravot , Christophe Jean Douady , Frédéric Hervant
Journal of Experimental Biology, 2009, 212 (12), pp.1859-1868. ⟨10.1242/jeb.027987⟩
Journal articles halsde-00392595v1

Freeze tolerance evolution among Anurans : frequency and timing of appearance

Yann Voituron , Hervé Barré , Hans Ramlov , Christophe Jean Douady
Cryobiology, 2009, 58, pp.241-247. ⟨10.1016/j.cryobiol.2009.01.001⟩
Journal articles halsde-00382964v1

Characterization and PCR multiplexing of 14 new polymorphic microsatellite loci for the invasive subantarctic carabid Merizodus soledadinus (Coleoptera: Carabidae).

Lisa Lalouette , B. Kaufmann , L. Konecny , David Renault , Christophe Jean Douady
Conservation Genetics Resources, 2009, 1, pp.455-458. ⟨10.1007/s12686-009-9105-9⟩
Journal articles hal-00462140v1

Scent evolution in Chinese roses

Gabriel Scalliet , Florence Piola , Christophe Jean Douady , Stéphane Réty , Olivier Raymond
Proceedings of the National Academy of Sciences of the United States of America, 2008, 105 (15), pp.5927-5932. ⟨10.1073/pnas.0711551105⟩
Journal articles hal-02662642v1

The imprint of quaternary glaciers on the present-day distribution of the obligate groundwater amphipod Niphargus virei (Niphargidae)

Arnaud Foulquier , Florian Malard , Tristan Lefébure , Christophe Jean Douady , Janine Gibert
Journal of Biogeography, 2008, 35, pp.552-564. ⟨10.1111/j.1365-2699.2007.01795.x⟩
Journal articles halsde-00264658v1

Mammoth and elephant phylogenetic relationships: Mammut americanum, the missing outgroup.

L. Orlando , Catherine Hänni , Christophe Jean Douady
Evolutionnary Bioinformatic Online, 2007, 2, pp.45-51
Journal articles halsde-00157620v1

Testing dispersal and cryptic diversity in a widely distributed groundwater amphipod (Niphargus rhenorhodanensis).

T. Lefébure , Christophe Jean Douady , Florian Malard , Janine Gibert
Molecular Phylogenetics and Evolution, 2007, 42 (3), pp.676-686. ⟨10.1016/j.ympev.2006.08.020⟩
Journal articles halsde-00157625v1

Density gradient ultracentrifugation and whole genome sequences: fine-tuning the correspondence.

O. Clay , N. Carels , Christophe Jean Douady , G. Bernardi
Progress in Colloid and Polymer Science, 2006, 131, pp.97-107
Journal articles halsde-00153569v1

Phylogeography of a subterranean amphipod reveals cryptic diversity and dynamic evolution in extreme environments

T. Lefébure , C.J. Douady , Manolo Gouy , P. Trontel , J. Briolay
Molecular Ecology, 2006, 15, pp.1797-1806. ⟨10.1111/j.1365-294X.2006.02888.x⟩
Journal articles hal-00427985v1

Molecular phylogeny of the extinct giant deer, Megaloceros giganteus.

Sandrine Hughes , Thomas J. Hayden , Christophe Jean Douady , Christelle Tougard , Mietje Germonpré
Molecular Phylogenetics and Evolution, 2006, 40 (1), pp.285-291. ⟨10.1016/j.ympev.2006.02.004⟩
Journal articles hal-00199774v1

De l'influence des glaciations du Quaternaire sur les crustacés aquatiques souterains.

Christophe Jean Douady , Florian Malard , T. Lefébure , Julien Issartel , J. Azzarotto
Nature et Patrimoine en Pays de Savoie, 2006, 18 (3), pp.26-29
Journal articles halsde-00157681v1

Geographic distribution of an extinct equid (E. hydruntinus, Mammalia, Equidae) revealed by morphological and genetical analyses of fossils.

L. Orlando , M. Mashkour , A. Burke , Christophe Jean Douady , V. Eisenmann
Molecular Ecology, 2006, 15, pp.2083-2093
Journal articles halsde-00153429v1

Molecular Phylogeny of the Extinct Giant Deer, Megaloceros giganteus

S. Hughes , T. Hayden , Christophe Jean Douady , C. Tougard , M. Germonpré
Molecular Phylogenetics and Evolution, 2006, 40, pp.285-291
Journal articles halsde-00153470v1

Relationship between morphological taxonomy and molecular divergence within Crustacea : Proposal of a molecular threshold to help species delimitation

T. Lefébure , C.J. Douady , Manolo Gouy , J. Gibert
Molecular Phylogenetics and Evolution, 2006, 40 (2), pp.435-447. ⟨10.1016/j.ympev.2006.03.014⟩
Journal articles hal-00427988v1

Phylogeography of a Nematode (Heligmosomoides polygyrus) in the Western Palearctic region: Persistence of Northern cryptic populations during ice ages?

C. Nieberding , R. Libois , Christophe Jean Douady , S. Morand , J.R. Michaux
Molecular Ecology, 2005, 14, pp.765-779
Journal articles halsde-00153670v1

Molecular evidence for multiple lineages in the gorgonian family Plexauridae (Anthozoa : Octocorallia).

H.H. Wirshing , C.G. Messing , Christophe Jean Douady , J. Reed , M.J. Stanhope
Marine Biology, 2005, 147, pp.497-508
Journal articles halsde-00340217v1

The use of composite taxa in supermatrices.

M.S. Springer , M. Scally , O. Madsen , W.W. de Jong , Christophe Jean Douady
Molecular Phylogenetics and Evolution, 2004, 30, pp.883-884
Journal articles halsde-00153775v1

Intragenomic heterogeneity and intergenomic recombination among haloarchaeal rRNA genes.

Y. Boucher , Christophe Jean Douady , A.K. Sharma , M. Kamekura , W.F. Doolittle
Journal of Bacteriology, 2004, 186, pp.1980-3990
Journal articles halsde-00154721v1

"Lipotyphlan" phylogeny based on the Growth Hormone Receptor gene: a reanalysis.

Christophe Jean Douady , M. Scally , M.S. Springer , M.J. Stanhope
Molecular Phylogenetics and Evolution, 2004, 30, pp.778-788
Journal articles halsde-00154692v1
Image document

Comparison of Bayesian and maximum likelihood bootstrap measures of phylogenetic reliability.

Christophe Jean Douady , Frédéric Delsuc , Yan Boucher , W Ford Doolittle , Emmanuel J.P. Douzery
Molecular Biology and Evolution, 2003, 20 (2), pp.248-54. ⟨10.1093/molbev/msg042⟩
Journal articles halsde-00192997v1

Parallel adaptive radiations in two major clades of placental mammals

Christophe J Douady , Ole Madsen , Mark Scally , Diana Kao , Ronald Debry
Nature, 2001, 409 (6820), pp.610-614. ⟨10.1038/35054544⟩
Journal articles hal-03433942v1

Mitochondrial Versus Nuclear Gene Sequences in Deep-Level Mammalian Phylogeny Reconstruction

Christophe J Douady , Mark Springer , Ronald Debry , Heather Amrine , Ole Madsen
Molecular Biology and Evolution, 2001, 18 (2), pp.132-143. ⟨10.1093/oxfordjournals.molbev.a003787⟩
Journal articles hal-03433938v1

Multiplicité des symbioses : du parasitisme au mutualisme

Wafa Achouak , Philippe Bertin , Pierre Capy , Didier Debroas , Franck Dedeine
L’empreinte du Vivant, Le Cherche Midi, pp.191, 2015, 978-2-7491-4383-5
Book sections hal-02389481v1

Phylogénie moléculaire

Samuel Blanquart , Alexis Criscuolo , Christophe J Douady , Emmanuel Douzery , Nicolas Lartillot
Thierry Lefèvre; Michel Raymond; Frédéric Thomas. Biologie évolutive, De Boeck, 2010, 9782804101619
Book sections hal-04001134v1