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Subterranean species inventory in the molecular era
Florian Malard
,
Héloïse Verdier
,
Lara Konecny-Dupré
,
David Eme
,
Christophe J Douady
Karstologia, 2022
Journal articles
hal-03810304v1
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Unique and shared effects of local and catchment predictors over distribution of hyporheic organisms: does the valley rule the stream?
Samuel Mouron
,
David Eme
,
Arnaud Bellec
,
Mélanie Bertrand
,
Stefano Mammola
Journal articles
hal-03616026v1
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Microbiome analysis in Lascaux Cave in relation to black stain alterations of rock surfaces and collembola
Lise Alonso
,
Thomas Pommier
,
Laurent Simon
,
Flavien Maucourt
,
Jeanne Doré
Journal articles
hal-03875805v1
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Dispersal limitation by structures is more important than intermittent drying effects for metacommunity dynamics in a highly fragmented river network
Maïlys Gauthier
,
Guillaume Le Goff
,
Bertrand Launay
,
Christophe J Douady
,
T. Datry
Journal articles
hal-03369180v1
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Bedrock radioactivity influences the rate and spectrum of mutation
Nathanaëlle Saclier
,
Patrick Chardon
,
Florian Malard
,
Lara Konecny-Dupré
,
David Eme
Journal articles
hal-03051267v1
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Fragmentation promotes the role of dispersal in determining 10 intermittent headwater stream metacommunities
Maïlys Gauthier
,
Bertrand Launay
,
Guillaume Le Goff
,
Herve Pella
,
Christophe Jean Douady
Journal articles
hal-03138187v1
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Enhancing DNA metabarcoding performance and applicability with bait capture enrichment and DNA from conservative ethanol
Maïlys Gauthier
,
Lara Konecny-Dupré
,
Agnès Nguyen
,
Vasco Elbrecht
,
T. Datry
Journal articles
hal-02328256v1
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GOTIT: A laboratory application software for optimizing multi‐criteria species‐based research
Florian Malard
,
Philippe Grison
,
Louis Duchemin
,
Lara Konecny-Dupré
,
Tristan Lefébure
Journal articles
hal-02329439v1
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Trophic selectivity in aquatic isopods increases with the availability of resources
Clémentine François
,
Laurent Simon
,
Florian Malard
,
Tristan Lefébure
,
Christophe Jean Douady
Journal articles
hal-02492518v1
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Anthropization level of Lascaux Cave microbiome shown by regional‐scale comparisons of pristine and anthropized caves
Lise Alonso
,
Thomas Pommier
,
Bernard Kaufmann
,
Audrey Dubost
,
David Chapulliot
Journal articles
hal-02310389v1
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Life History Traits Impact the Nuclear Rate of Substitution but Not the Mitochondrial Rate in Isopods
Nathanaëlle Saclier
,
Clémentine François
,
Lara Konecny-Dupré
,
Nicolas Lartillot
,
Laurent Guéguen
Journal articles
hal-01951580v1
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Disconnection between genetic and morphological diversity in the planktonic foraminifer Neogloboquadrina pachyderma from the Indian sector of the Southern Ocean
Aurore André
,
Frédéric Quillévéré
,
Ralf Schiebel
,
Raphaël Morard
,
Hélène Howa
Journal articles
hal-02152105v1
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Do cryptic species matter in macroecology? Sequencing European groundwater crustaceans yields smaller ranges but does not challenge biodiversity determinants
David Eme
,
Maja Zagmajster
,
Teo Delić
,
Cene Fišer
,
Jean-François Flot
Journal articles
hal-01731403v1
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Multiple invasions in urbanized landscapes: interactions between the invasive garden ant Lasius neglectus and Japanese knotweeds (Fallopia spp.)
Jérôme Gippet
,
Florence Piola
,
Soraya Rouifed
,
Marie-Rose Viricel
,
Sara Puijalon
Arthropod-Plant Interactions, 2018, 12 (3), pp.351-360
Journal articles
hal-01953973v1
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Less effective selection leads to larger genomes
Tristan Lefébure
,
Claire Morvan
,
Florian Malard
,
Clémentine François
,
Lara Konecny-Dupré
Journal articles
hal-01544879v2
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Geomorphic influence on intraspecific genetic differentiation and diversity along hyporheic corridors
Florian Malard
,
Cécile Capderrey
,
Benjamin Churcheward
,
David Eme
,
Bernard Kaufmann
Journal articles
hal-01723507v1
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Phylogeny, age structure, growth dynamics and colour pattern of the Salamandra algira algira population in the Edough Massif, northeastern Algeria
Selma Bouzid
,
Lara Konecny
,
Odile Grolet
,
Christophe Jean Douady
,
Pierre Joly
Journal articles
hal-01655714v1
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No Evidence That Nitrogen Limitation Influences the Elemental Composition of Isopod Transcriptomes and Proteomes
Clémentine François
,
L. Duret
,
Laurent Simon
,
Florian Mermillod-Blondin
,
Florian Malard
Journal articles
hal-01370129v1
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Nomenclature for the Nameless: A Proposal for an Integrative Molecular Taxonomy of Cryptic Diversity Exemplified by Planktonic Foraminifera
Raphael Morard
,
Gilles Escarguel
,
Agnès K.M. Weiner
,
Aurore Andre
,
Christophe Jean Douady
Journal articles
hal-01368819v1
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Trophic ecology of groundwater species reveals specialization in a low-productivity environment
Clémentine François
,
Florian Mermillod-Blondin
,
Florian Malard
,
François Fourel
,
Christophe Lecuyer
Journal articles
hal-01286189v1
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Methodology for Single-Cell Genetic Analysis of Planktonic Foraminifera for Studies of Protist Diversity and Evolution
Agnès K.M. Weiner
,
Raphael Morard
,
Manuel Weinkauf
,
Kate F. Darling
,
Aurore Andre
Journal articles
hal-01420794v1
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PFR²: a curated database of planktonic Foraminifera18S ribosomal DNA as a resource for studies of plankton ecology, biogeography, and evolution
Raphaël Morard
,
Kate F Darling
,
Frédéric Mahé
,
Stéphane Audic
,
Yurika Ujiié
Journal articles
hal-01149023v2
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Mitochondrial genomes reveal the extinct Hippidion as an outgroup to all living equids
Clio Der Sarkissian
,
Julia Vilstrup
,
Mikkel Schubert
,
Andaine Seguin-Orlando
,
David Eme
Journal articles
hal-01323150v1
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SSU rDNA Divergence in Planktonic Foraminifera: Molecular Taxonomy and Biogeographic Implications
Aurore André
,
Quillévéré Frédéric
,
Raphaël Morard
,
Yurika Ujiié
,
Gilles Escarguel
Journal articles
hal-01100608v1
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Sterols and steroids in a freshwater crustacean (Proasellus meridianus): hormonal response to nutritional input
Nathalie Mondy
,
Vincent Grossi
,
Eva Cathalan
,
Jean-Paul Delbecque
,
Florian Mermillod-Blondin
Journal articles
halsde-00994953v1
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Integrating phylogeography, physiology, and habitat modelling to explore species range déterminants
David Eme
,
Florian Malard
,
Céline Colson-Proch
,
Pauline Jean
,
Sébastien Calvignac
Journal articles
halsde-00968144v1
|
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Microsatellite Development and First Population Size Estimates for the Groundwater Isopod Proasellus walteri
Cécile Capderrey
,
Bernard Kaufmann
,
Pauline Jean
,
Florian Malard
,
Lara Konecny-Dupré
Journal articles
halsde-00876955v1
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The cryptic and the apparent reversed: lack of genetic differentiation within the morphologically diverse plexus of the planktonic foraminifer Globigerinoides sacculifer
Aurore Andre
,
Agnes Weiner
,
Frederic Quillevere
,
Ralf Aurahs
,
Raphaël Morard
Journal articles
hal-00797451v1
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Bayesian phylogeographic inferences reveal contrasting colonization dynamics among European groundwater isopods
David Eme
,
Florian Malard
,
Lara Konecny-Dupré
,
Tristan Lefébure
,
Christophe Jean Douady
Journal articles
halsde-00921300v1
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Timetree of aselloidea reveals species diversification dynamics in groundwater
Claire Morvan
,
Florian Malard
,
Emmanuel Paradis
,
Tristan Lefébure
,
Lara Konecny-Dupré
Journal articles
halsde-00837844v1
|
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Thermal tolerance breadths among groundwater crustaceans living in a thermally constant environment
Florian Mermillod-Blondin
,
C. Lefour
,
Lisa Lalouette
,
David Renault
,
Florian Malard
Journal articles
halsde-00823715v1
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Global scale same-specimen morpho-genetic analysis of Truncorotalia truncatulinoides: a perspective on the morphological species concept in planktonic foraminifera
Frederic Quillevere
,
Raphaël Morard
,
Gilles Escarguel
,
Christophe Jean Douady
,
Y Ujiie
Journal articles
hal-00911466v1
|
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Worldwide Genotyping in the Planktonic Foraminifer Globoconella inflata: Implications for Life History and Paleoceanography
Raphaël Morard
,
Frederic Quillevere
,
Christophe Jean Douady
,
Colomban de Vargas
,
Thibault de Garidel-Thoron
Journal articles
hal-00657029v1
|
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Preventing the pollution of mitochondrial datasets with nuclear mitochondrial paralogs (numts)
Sébastien Calvignac
,
Lara Konecny
,
Florian Malard
,
Christophe Jean Douady
Journal articles
halsde-00815371v1
|
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Plant resistance to mechanical stress: evidence of an avoidance-tolerance trade-off
Sara Puijalon
,
Tjeerd J. Bouma
,
Christophe Jean Douady
,
Jon M. van Groenendael
,
P.R. Anten Niels
Journal articles
halsde-00621076v1
|
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Unravelling phylogenetic relationships among regionally co-existing species: Hydropsyche species (Trichoptera: Hydropsychidae) in the Loire River
Bernhard Statzner
,
Christophe Jean Douady
,
Lara Konecny
,
Sylvain Dolédec
Zootaxa, 2010, 2556, pp.51-68
Journal articles
halsde-00521281v1
|
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First cellular approach of the effects of global warming on groundwater organisms: a study of the HSP70 gene expression
Céline Colson-Proch
,
Anne Morales
,
Frédéric Hervant
,
Lara Konecny
,
Colette Moulin
Journal articles
halsde-00486136v1
|
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Characterization and PCR multiplexing of 14 new polymorphic microsatellite loci for the invasive subantarctic carabid Merizodus soledadinus (Coleoptera: Carabidae).
Lisa Lalouette
,
B. Kaufmann
,
L. Konecny
,
David Renault
,
Christophe Jean Douady
Journal articles
hal-00462140v1
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A molecular test for cryptic diversity in ground water : how large are the ranges of macro-stygobionts ? In: Freshwater Biology Special Issue, Assessing and Conserving Groundwater Biodiversity (Eds. J. Gibert & D.C. Culver)
Peter Trontelj
,
Christophe Jean Douady
,
Cene Fiser
,
Janine Gibert
,
Spela Goricki
Journal articles
halsde-00378197v1
|
|
Do current environmental conditions explain physiological and metabolic responses of subterranean crustaceans to cold ?
Céline Colson-Proch
,
David Renault
,
Antoine Gravot
,
Christophe Jean Douady
,
Frédéric Hervant
Journal articles
halsde-00392595v1
|
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Freeze tolerance evolution among Anurans : frequency and timing of appearance
Yann Voituron
,
Hervé Barré
,
Hans Ramlov
,
Christophe Jean Douady
Journal articles
halsde-00382964v1
|
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Scent evolution in Chinese roses
Gabriel Scalliet
,
Florence Piola
,
Christophe Jean Douady
,
Stéphane Réty
,
Olivier Raymond
Proceedings of the National Academy of Sciences of the United States of America, 2008, 105 (15), pp.5927-5932. ⟨10.1073/pnas.0711551105⟩
Journal articles
hal-02662642v1
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The imprint of quaternary glaciers on the present-day distribution of the obligate groundwater amphipod Niphargus virei (Niphargidae)
Arnaud Foulquier
,
Florian Malard
,
Tristan Lefébure
,
Christophe Jean Douady
,
Janine Gibert
Journal articles
halsde-00264658v1
|
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Testing dispersal and cryptic diversity in a widely distributed groundwater amphipod (Niphargus rhenorhodanensis).
T. Lefébure
,
Christophe Jean Douady
,
Florian Malard
,
Janine Gibert
Journal articles
halsde-00157625v1
|
|
Mammoth and elephant phylogenetic relationships: Mammut americanum, the missing outgroup.
L. Orlando
,
Catherine Hänni
,
Christophe Jean Douady
Evolutionnary Bioinformatic Online, 2007, 2, pp.45-51
Journal articles
halsde-00157620v1
|
|
Molecular Phylogeny of the Extinct Giant Deer, Megaloceros giganteus
S. Hughes
,
T. Hayden
,
Christophe Jean Douady
,
C. Tougard
,
M. Germonpré
Molecular Phylogenetics and Evolution, 2006, 40, pp.285-291
Journal articles
halsde-00153470v1
|
|
Relationship between morphological taxonomy and molecular divergence within Crustacea : Proposal of a molecular threshold to help species delimitation
T. Lefébure
,
C.J. Douady
,
Manolo Gouy
,
J. Gibert
Journal articles
hal-00427988v1
|
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Phylogeography of a subterranean amphipod reveals cryptic diversity and dynamic evolution in extreme environments
T. Lefébure
,
C.J. Douady
,
Manolo Gouy
,
P. Trontel
,
J. Briolay
Journal articles
hal-00427985v1
|
|
Density gradient ultracentrifugation and whole genome sequences: fine-tuning the correspondence.
O. Clay
,
N. Carels
,
Christophe Jean Douady
,
G. Bernardi
Progress in Colloid and Polymer Science, 2006, 131, pp.97-107
Journal articles
halsde-00153569v1
|
|
Molecular phylogeny of the extinct giant deer, Megaloceros giganteus.
Sandrine Hughes
,
Thomas J. Hayden
,
Christophe Jean Douady
,
Christelle Tougard
,
Mietje Germonpré
Journal articles
hal-00199774v1
|
|
De l'influence des glaciations du Quaternaire sur les crustacés aquatiques souterains.
Christophe Jean Douady
,
Florian Malard
,
T. Lefébure
,
Julien Issartel
,
J. Azzarotto
Nature et Patrimoine en Pays de Savoie, 2006, 18 (3), pp.26-29
Journal articles
halsde-00157681v1
|
|
Geographic distribution of an extinct equid (E. hydruntinus, Mammalia, Equidae) revealed by morphological and genetical analyses of fossils.
L. Orlando
,
M. Mashkour
,
A. Burke
,
Christophe Jean Douady
,
V. Eisenmann
Molecular Ecology, 2006, 15, pp.2083-2093
Journal articles
halsde-00153429v1
|
|
Molecular evidence for multiple lineages in the gorgonian family Plexauridae (Anthozoa : Octocorallia).
H.H. Wirshing
,
C.G. Messing
,
Christophe Jean Douady
,
J. Reed
,
M.J. Stanhope
Marine Biology, 2005, 147, pp.497-508
Journal articles
halsde-00340217v1
|
|
Phylogeography of a Nematode (Heligmosomoides polygyrus) in the Western Palearctic region: Persistence of Northern cryptic populations during ice ages?
C. Nieberding
,
R. Libois
,
Christophe Jean Douady
,
S. Morand
,
J.R. Michaux
Molecular Ecology, 2005, 14, pp.765-779
Journal articles
halsde-00153670v1
|
|
"Lipotyphlan" phylogeny based on the Growth Hormone Receptor gene: a reanalysis.
Christophe Jean Douady
,
M. Scally
,
M.S. Springer
,
M.J. Stanhope
Molecular Phylogenetics and Evolution, 2004, 30, pp.778-788
Journal articles
halsde-00154692v1
|
|
Intragenomic heterogeneity and intergenomic recombination among haloarchaeal rRNA genes.
Y. Boucher
,
Christophe Jean Douady
,
A.K. Sharma
,
M. Kamekura
,
W.F. Doolittle
Journal of Bacteriology, 2004, 186, pp.1980-3990
Journal articles
halsde-00154721v1
|
|
The use of composite taxa in supermatrices.
M.S. Springer
,
M. Scally
,
O. Madsen
,
W.W. de Jong
,
Christophe Jean Douady
Molecular Phylogenetics and Evolution, 2004, 30, pp.883-884
Journal articles
halsde-00153775v1
|
|
Comparison of Bayesian and maximum likelihood bootstrap measures of phylogenetic reliability.
Christophe Jean Douady
,
Frédéric Delsuc
,
Yan Boucher
,
W Ford Doolittle
,
Emmanuel J.P. Douzery
Journal articles
halsde-00192997v1
|
|
Mitochondrial Versus Nuclear Gene Sequences in Deep-Level Mammalian Phylogeny Reconstruction
Christophe J Douady
,
Mark Springer
,
Ronald Debry
,
Heather Amrine
,
Ole Madsen
Journal articles
hal-03433938v1
|
|
Parallel adaptive radiations in two major clades of placental mammals
Christophe J Douady
,
Ole Madsen
,
Mark Scally
,
Diana Kao
,
Ronald Debry
Journal articles
hal-03433942v1
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