Claire Gachon

Publications

Article dans une revue (45)

Importance, structure, cultivability, and resilience of the bacterial microbiota during infection of laboratory-grown Haematococcus spp. by the blastocladialean pathogen Paraphysoderma sedebokerense : evidence for a domesticated microbiota and its potential for biocontrol Jeanne Miebach,David Green,Martina Strittmatter,Claire Mallinger,Lucie Le Garrecet al. FEMS Microbiology Ecology, 2025, 101 (2), ⟨10.1093/femsec/fiaf011⟩ Article dans une revue mnhn-05029530v1
Cell death is a conserved innate disease resistance response of brown algae against the oomycete Eurychasma dicksonii Claire M.M. Gachon,Dieter G Müller,Martina Strittmatter,Pedro Murúa,Max Beckmannet al. iScience, 2025, 28 (9), pp.113195. ⟨10.1016/j.isci.2025.113195⟩ Article dans une revue hal-05431510v1
Professor Dieter G. Müller's legacy in algal developmental biology and phycology (1935–2025) Wilhelm Boland,Ingo Maier,Akira Peters,Hiroshi Kawai,Renato Westermeieret al. Journal of Phycology, 2025, 61 (6), pp.1534-1535. ⟨10.1111/jpy.70106⟩ Article dans une revue hal-05471589v1
ParAquaSeq, a Database of Ecologically Annotated rRNA Sequences Covering Zoosporic Parasites Infecting Aquatic Primary Producers in Natural and Industrial Systems Silke van den Wyngaert,Slawek Cerbin,Laura Garzoli,Hans‐peter Grossart,Alena Gsellet al. Molecular Ecology Resources, 2025, 25 (6), pp.e14099. ⟨10.1111/1755-0998.14099⟩ Article dans une revue hal-05353946v1
Assessment of nine markers for phylogeny, species and haplotype identification of Kappaphycus species and Eucheuma denticulatum (Solieriaceae, Rhodophyta) Ji Tan,Pui-Ling Tan,Sze-Wan Poong,Janina Brakel,Cecilia Rad Menendezet al. European Journal of Phycology, 2024, 59 (4), pp.472-489. ⟨10.1080/09670262.2024.2396324⟩ Article dans une revue mnhn-05029535v1
Phagocytosis underpins the biotrophic lifestyle of intracellular parasites in the class Phytomyxea (Rhizaria) Andrea Garvetto,Pedro Murúa,Martin Kirchmair,Willibald Salvenmoser,Michaela Hittorfet al. New Phytologist, In press, ⟨10.1111/nph.18828⟩ Article dans une revue mnhn-04015084v1
My seaweed looks weird: a community web portal to accelerate pathogen discovery in seaweeds Martina Strittmatter,Pedro Murúa,Paola Arce,Marie-Mathilde Perrineau,Claire Gachon Journal of Applied Phycology, 2022, 3 (1), pp.300-305. ⟨10.1080/26388081.2022.2059783⟩ Article dans une revue mnhn-04015087v1
Genetic differentiation in wild Kappaphycus Doty and Eucheuma J. Agardh (Solieriaceae, Rhodophyta) from East Malaysia reveals high inter- and intraspecific diversity with strong biogeographic signal Ji Tan,Pui-Ling Tan,Sze-Wan Poong,Janina Brakel,Claire Gachonet al. Journal of Applied Phycology, 2022, 34 (5), pp.2719-2733. ⟨10.1007/s10811-022-02809-9⟩ Article dans une revue mnhn-04015086v1
The microbiome of the habitat‐forming brown alga Fucus vesiculosus (Phaeophyceae) has similar cross‐Atlantic structure that reflects past and present drivers 1 Kyle Capistrant‐fossa,Hilary Morrison,Aschwin Engelen,Charlotte T.C. Quigley,Aleksey Morozovet al. Journal of Phycology, 2021, ⟨10.1111/jpy.13194⟩ Article dans une revue mnhn-03437685v1
Assessment of genetic diversity within eucheumatoid cultivars in east Sabah, Malaysia Pui-Ling Tan,Sze-Wan Poong,Ji Tan,Janina Brakel,Claire Gachonet al. Journal of Applied Phycology, 2021, ⟨10.1007/s10811-021-02608-8⟩ Article dans une revue mnhn-03437681v1
A community perspective on the concept of marine holobionts: current status, challenges, and future directions Simon M. Dittami,Enrique Arboleda,J.-C. Auguet,Arite Bigalke,Enora Briandet al. PeerJ, 2021, 9, pp.e10911. ⟨10.7717/peerj.10911⟩ Article dans une revue hal-03166872v2
Exploring, harnessing and conserving marine genetic resources towards a sustainable seaweed aquaculture Yacine Badis,Delphine Scornet,Minori Harada,Céline Caillard,Olivier Godfroyet al. Plants, People, Planet, 2021, 3 (4), pp.337-349. ⟨10.1002/ppp3.10190⟩ Article dans une revue mnhn-03437699v1
Exhaustive reanalysis of barcode sequences from public repositories highlights ongoing misidentifications and impacts taxa diversity and distribution. Antoine Fort,Marcus Mchale,Kevin Cascella,Philippe Potin,Marie-Mathilde Perrineauet al. Molecular Ecology Resources, 2021, ⟨10.1111/1755-0998.13453⟩ Article dans une revue hal-03268583v1
A genomic catalog of Earth’s microbiomes Stephen Nayfach,Simon Roux,Rekha Seshadri,Daniel Udwary,Neha Vargheseet al. Nature Biotechnology, 2021, 39 (4), pp.499-509. ⟨10.1038/s41587-020-0718-6⟩ Article dans une revue hal-03591904v1
Targeted CRISPR‐Cas9‐based gene knockouts in the model brown alga Ectocarpus Yacine Badis,Delphine Scornet,Minori Harada,Céline Caillard,Olivier Godfroyet al. New Phytologist, 2021, 231 (5), pp.2077-2091. ⟨10.1111/nph.17525⟩ Article dans une revue hal-03356727v1
The Bacterial and Fungal Microbiota of Saccharina latissima (Laminariales, Phaeophyceae) Anne Tourneroche,Raphaël Lami,Gaëtan Burgaud,Isabelle Domart-Coulon,Wei Liet al. Frontiers in Marine Science, 2020, 7, pp.587566. ⟨10.3389/fmars.2020.587566⟩ Article dans une revue hal-03915723v2
The gene repertoire of Pythium porphyrae (Oomycota) suggests an adapted plant pathogen tackling red algae Yacine Badis,Jong Won Han,Tatyana A Klochkova,Claire M M Gachon,Gwang Hoon Kim Algae, 2020, 2020 (2), pp.133 - 144. ⟨10.4490/algae.2020.35.6.4⟩ Article dans une revue mnhn-02882701v1
Cryopreservation of the parasitic and saprophytic life stage of the blastocladialean pathogen Paraphysoderma sedebokerense infecting the green algae Haematococcus pluvialis and Scenedesmus dimorphus Martina Strittmatter,Cecilia Rad-Menéndez,Claire Gachon Phycologia, 2020, pp.1-5. ⟨10.1080/00318884.2020.1827825⟩ Article dans une revue mnhn-02968211v1
Host and pathogen autophagy are central to the inducible local defences and systemic response of the giant kelp Macrocystis pyrifera against the oomycete pathogen Anisolpidium ectocarpii Pedro Murúa,Dieter G. Müller,Pieter van West,Mohammad Etemadi-Shalamzari,Claire M. M. Gachon New Phytologist, 2020, ⟨10.1111/nph.16438⟩ Article dans une revue mnhn-02502668v1
Parallelisable non-invasive biomass, fitness and growth measurement of macroalgae and other protists with nephelometry Benoît Calmes,Martina Strittmatter,Bertrand Jacquemin,Marie-Mathilde Perrineau,Céline Rousseauet al. Algal Research - Biomass, Biofuels and Bioproducts, 2020, 46, pp.101762. ⟨10.1016/j.algal.2019.101762⟩ Article dans une revue hal-02462340v1
Novel α-Hydroxy γ-Butenolides of Kelp Endophytes Disrupt Bacterial Cell-to-Cell Signaling Marine Vallet,Yee-Meng Chong,Anne Tourneroche,Grégory Genta-Jouve,Cédric Hubaset al. Frontiers in Marine Science, 2020, 7, pp.601. ⟨10.3389/fmars.2020.00601⟩ Article dans une revue hal-02909195v1
Demystifying biotrophs: FISHing for mRNAs to decipher plant and algal pathogen–host interaction at the single cell level Julia Badstöber,Claire M M Gachon,Jutta Ludwig-Müller,Adolf Sandbichler,Sigrid Neuhauser Scientific Reports, 2020, 10 (1), ⟨10.1038/s41598-020-70884-4⟩ Article dans une revue mnhn-02931536v1
The Unique Lipidomic Signatures of Saccharina latissima Can Be Used to Pinpoint Their Geographic Origin João Monteiro,Felisa Rey,Tânia Melo,Ana Moreira,Jean-François Arbonaet al. Biomolecules, 2020, 10 (1), pp.107. ⟨10.3390/biom10010107⟩ Article dans une revue mnhn-02502701v1
Hidden diversity in the oomycete genus Olpidiopsis is a potential hazard to red algal cultivation and conservation worldwide Yacine Badis,Tatyana Klochkova,Janina Brakel,Paola Arce,Martin Ostrowskiet al. European Journal of Phycology, 2019, pp.1-10. ⟨10.1080/09670262.2019.1664769⟩ Article dans une revue mnhn-02502732v1
Novel species of the oomycete Olpidiopsis potentially threaten European red algal cultivation Yacine Badis,Tatyana Klochkova,Martina Strittmatter,Andrea Garvetto,Pedro Murúaet al. Journal of Applied Phycology, 2019, 31 (2), pp.1239-1250. ⟨10.1007/s10811-018-1641-9⟩ Article dans une revue hal-03850418v1
A review of reported seaweed diseases and pests in aquaculture in Asia Georgia Ward,Joseph Faisan,Elizabeth Cottier‐cook,Claire M M Gachon,Anicia Hurtadoet al. Journal of the World Aquaculture Society, 2019, ⟨10.1111/jwas.12649⟩ Article dans une revue mnhn-02502715v1
Comparison of sterol and fatty acid profiles of chytrids and their hosts reveals trophic upgrading of nutritionally inadequate phytoplankton by fungal parasites Mélanie Gerphagnon,Ramsy Agha,Dominik Martin-Creuzburg,Alexandre Bec,Fanny Perrièreet al. Environmental Microbiology, 2019, 21 (3), pp.949-958. ⟨10.1111/1462-2920.14489⟩ Article dans une revue hal-01984045v1
Rediscovering Zygorhizidium affluens Canter: Molecular Taxonomy, Infectious Cycle, and Cryopreservation of a Chytrid Infecting the Bloom-Forming Diatom Asterionella formosa Cecilia Rad-Menéndez,Mélanie Gerphagnon,Andrea Garvetto,Paola Arce,Yacine Badiset al. Applied and Environmental Microbiology, 2018, 84 (23), pp.e01826-18. ⟨10.1128/AEM.01826-18⟩ Article dans une revue hal-01981931v1
Chemically-Mediated Interactions Between Macroalgae, Their Fungal Endophytes, and Protistan Pathogens Marine Vallet,Martina Strittmatter,Pedro Murúa,Sandrine Lacoste,Joëlle Dupontet al. Frontiers in Microbiology, 2018, 9, pp.3161. ⟨10.3389/fmicb.2018.03161⟩ Article dans une revue hal-02297595v1
Insights into the Evolution of Multicellularity from the Sea Lettuce Genome Olivier de Clerck,Shu-Min Kao,Kenny Bogaert,Jonas Blomme,Fatima Foflonkeret al. Current Biology, 2018, 28 (18), pp.2921-2933.e5. ⟨10.1016/j.cub.2018.08.015⟩ Article dans une revue hal-03974734v1
The Algal Revolution Juliet Brodie,Cheong Xin Chan,Olivier de Clerck,J. Mark Cock,Susana Coelhoet al. Trends in Plant Science, 2017, 22 (8), pp.726-738. ⟨10.1016/j.tplants.2017.05.005⟩ Article dans une revue istex hal-01806394v1
Biotic interactions as drivers of algal origin and evolution Juliet Brodie,Steven Ball,François-Yves Bouget,Cheong Xin Chan,Olivier de Clercket al. New Phytologist, 2017, 216 (3), pp.670-681. ⟨10.1111/nph.14760⟩ Article dans une revue (article de synthèse) hal-01806393v1
Insights into the red algae and eukaryotic evolution from the genome of Porphyra umbilicalis (Bangiophyceae, Rhodophyta) Susan Brawley,Nicolas Blouin,Elizabeth Ficko-Blean,Glen Wheeler,Martin Lohret al. Proceedings of the National Academy of Sciences of the United States of America, 2017, 114 (31), pp.E6361-E6370. ⟨10.1073/pnas.1703088114⟩ Article dans une revue hal-02950557v1
Pathogens of brown algae: culture studies of Anisolpidium ectocarpii and A. rosenvingei reveal that the Anisolpidiales are uniflagellated oomycetes Claire M.M. Gachon,Martina Strittmatter,Yacine Badis,Kyle Fletcher,Pieter Van Westet al. European Journal of Phycology, 2017, 52 (2), pp.133-148. ⟨10.1080/09670262.2016.1252857⟩ Article dans une revue hal-03850407v1
Perspectives on domestication research for sustainable seaweed aquaculture Myriam Valero,Marie-Laure Guillemin,Christophe Destombe,Bertrand Jacquemin,Claire M.M. Gachonet al. Perspectives in Phycology, 2017, 4 (1), pp.33-46. ⟨10.1127/pip/2017/0066⟩ Article dans une revue hal-04043004v1
Sexual Dimorphism and the Evolution of Sex-Biased Gene Expression in the Brown Alga Ectocarpus Agnieszka Lipinska,Alexandre Cormier,Remy Luthringer,Akira F Peters,Erwan Correet al. Molecular Biology and Evolution, 2015, 32 (6), pp.1581-1597. ⟨10.1093/molbev/msv049⟩ Article dans une revue hal-01285048v1
Microbial players involved in the decline of filamentous and colonial cyanobacterial blooms with a focus on fungal parasitism Mélanie Gerphagnon,Deborah Macarthur,Delphine Latour,Claire Gachon,Floris van Ogtropet al. Environmental Microbiology, 2015, 17 (8), pp.2573-2587 Article dans une revue hal-01983701v1
Attachment, penetration and early host defense mechanisms during the infection of filamentous brown algae by Eurychasma dicksonii. Amerssa Tsirigoti,Gordon W Beakes,Cécile Hervé,Claire M M Gachon,Christos Katsaroset al. Protoplasma, 2014, 252 (3), pp.1-12. ⟨10.1007/s00709-014-0721-1⟩ Article dans une revue hal-01113846v1
Genome structure and metabolic features in the red seaweed Chondrus crispus shed light on evolution of the Archaeplastida. Jonas Collén,Betina Porcel,Wilfrid Carré,Steven G Ball,Cristian Chaparroet al. Proceedings of the National Academy of Sciences of the United States of America, 2013, 110 (13), pp.5247-52. ⟨10.1073/pnas.1221259110⟩ Article dans une revue hal-01073830v1
Highly Dynamic Exon Shuffling in Candidate Pathogen Receptors ... What if Brown Algae Were Capable of Adaptive Immunity? Antonios Zambounis,Marek Elias,Lieven Sterck,Florian Maumus,Claire M. M. Gachon Molecular Biology and Evolution, 2012, 29 (4), pp.1263 - 1276. ⟨10.1093/molbev/msr296⟩ Article dans une revue hal-02647640v1
The Ectocarpus Genome and Brown Algal Genomics The Ectocarpus Genome Consortium J. Mark Cock,Lieven Sterck,Sophia Ahmed,Andrew E. Allen,Grigoris Amoutziaset al. Advances in Botanical Research, 2012, 64, pp.141 - 184. ⟨10.1016/B978-0-12-391499-6.00005-0⟩ Article dans une revue hal-02649287v1
Zoosporic true fungi in marine ecosystems: a review Frank H Gleason,Frithjof C Kuepper,James P Amon,Kathryn Picard,Claire M M Gachonet al. Marine and Freshwater Research, 2011, 62 (4), pp.383-393 Article dans une revue hal-00820103v1
The $Ectocarpus$ genome and the independent evolution of multicellularity in brown algae J. Mark Cock,Lieven Sterck,Pierre Rouzé,Delphine Scornet,Andrew E. Allenet al. Nature, 2010, 465 (7298), pp.617-621. ⟨10.1038/nature09016⟩ Article dans une revue cea-00906990v1
Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire C André Lévesque,Henk Brouwer,Liliana Cano,John P Hamilton,Carson Holtet al. Genome Biology, 2010, 11 (7), ⟨10.1186/gb-2010-11-7-r73⟩ Article dans une revue hal-01605006v1
Algal diseases: spotlight on a black box. Claire M M Gachon,Télesphore Sime-Ngando,Martina Strittmatter,Aurélie Chambouvet,Gwang Hoon Kim Trends in Plant Science, 2010, 15 (11), pp.633-40. ⟨10.1016/j.tplants.2010.08.005⟩ Article dans une revue istex hal-00820237v1

Rapport (3)

Référentiel des séquences génétiques des espèces de France : note pour la mise en place d'un nouvel outil national Aurélie Lacoeuilhe,Gaël P.J. Denys,Pascal Dupont,Anne-Sophie Archambeau,Bertrand Bed’homet al. PatriNat (OFB-MNHN-CNRS-IRD). 2025, 25 p. + annexes Rapport hal-04931482v1
Application of QTL and GWAS approaches in Saccharina latissima Zofia Nehr,Paolo Ruggeri,Komlan Avia,Lucie Jaugeon,Marie-Mathilde Perrineauet al. Deliverable D2.3, Station Biologique de Roscoff. 2021 Rapport (rapport contrat/projet) hal-05546359v1
Biobanking of novel S. latissima strains with characters of interest for biomass production Paolo Ruggeri,Lucie Jaugeon,Julien Dhinaut,Jaromir Guzinski,Antoine Fortet al. GENIALG Deliverable D2.2, Station Biologique de Roscoff. 2021 Rapport (rapport contrat/projet) hal-05559266v1

Autre publication scientifique (1)

Ensuring the Sustainable Future of the Rapidly Expanding Global Seaweed Aquaculture Industry – A Vision Elizabeth J Cottier-Cook,Nidhi Nagabhatla,Azam Asri,Malcolm Beveridge,Patricia Bianchiet al. 2021 Autre publication scientifique mnhn-03437705v1