Claire Kuchly

Publications

Article dans une revue (14)

High-quality chromosome-scale genome assemblies of 29 maize inbred lines of European breeding relevance Camille Marcuzzo,Clément Birbes,Camille Eché,Arnaud Di Franco,Thomas Farautet al. Scientific Data , 2026, Online ahead of print. ⟨10.1038/s41597-026-07055-z⟩ Article dans une revue (data paper) hal-05606755v1
Comprehensive detection of structural variations in long and short reads dataset of French cattle Maulana Mughitz Naji,Christophe Klopp,Camille Eché,Arnaud Di Franco,Clément Birbeset al. Scientific Reports, 2025, 15 (1), pp.40758. ⟨10.1038/s41598-025-24477-8⟩ Article dans une revue hal-05391915v1
Spatio-temporal diversity and genetic architecture of pyrantel resistance in Cylicocyclus nassatus, the most abundant horse parasite Guillaume Sallé,Élise Courtot,Cédric Cabau,Hugues Parrinello,Delphine Serreauet al. Peer Community Journal, 2025, 5, pp.e69. ⟨10.24072/pcjournal.571⟩ Article dans une revue hal-05197483v1
Whole genome short read data from 567 bulls of 14 breeds provides insight into genetic diversity of French cattle Mekki Boussaha,Camille Eché,Christophe Klopp,Cécile Grohs,Marine Milheset al. Data in Brief, 2025, 62, pp.112049. ⟨10.1016/j.dib.2025.112049⟩ Article dans une revue (data paper) hal-05268512v1
Pig and quail CpG methylation datasets from short and long read sequencing technologies Paul Terzian,Céline Vandecasteele,Joanna Lledo,Rémy-Félix Serre,Jules Sabbanet al. Scientific Data , 2025, 12 (1), pp.556. ⟨10.1038/s41597-025-04769-4⟩ Article dans une revue hal-05039144v1
Massive detection of cryptic recessive genetic defects in dairy cattle mining millions of life histories Florian Besnard,Ana Guintard,Cécile Grohs,Laurence Guzylack-Piriou,Margarita Canoet al. Genome Biology, 2024, 25 (1), pp.248. ⟨10.1186/s13059-024-03384-7⟩ Article dans une revue hal-04714371v1
Multi-genome comparisons reveal gain-and-loss evolution of anti-Mullerian hormone receptor type 2 as a candidate master sex-determining gene in Percidae Heiner Kuhl,Peter Euclide,Christophe Klopp,Cédric Cabau,Margot Zahmet al. BMC Biology, 2024, 22 (1), pp.141. ⟨10.1186/s12915-024-01935-9⟩ Article dans une revue hal-04638789v1
Large-scale detection and characterization of interchromosomal rearrangements in normozoospermic bulls using massive genotype and phenotype data sets Jeanlin Jourdain,Harmonie Barasc,Thomas Faraut,Anne Calgaro,Nathalie Bonnetet al. Genome Research, 2023, 33 (6), pp.957-971. ⟨10.1101/gr.277787.123⟩ Article dans une revue hal-04170739v1
A Bos taurus sequencing methods benchmark for assembly, haplotyping, and variant calling Camille Eché,Carole Iampietro,Clément Birbes,Andreea Dréau,Claire Kuchlyet al. Scientific Data , 2023, 10 (1), pp.369. ⟨10.1038/s41597-023-02249-1⟩ Article dans une revue (data paper) hal-04122201v1
Comparison of two molecular barcodes for the study of equine strongylid communities with amplicon sequencing Élise Courtot,Michel Boisseau,Sophie Dhorne-Pollet,Delphine Serreau,Amandine Gesbertet al. PeerJ, 2023, 11, pp.e15124. ⟨10.7717/peerj.15124⟩ Article dans une revue hal-04078317v1
A supernumerary “B-sex” chromosome drives male sex determination in the Pachón cavefish, Astyanax mexicanus Boudjema Imarazene,Kang Du,Séverine Beille,Elodie Jouanno,Romain Feronet al. Current Biology, 2021, 31 (21), pp.4800-4809.e9. ⟨10.1016/j.cub.2021.08.030⟩ Article dans une revue hal-03337251v1
Genome-wide Translational Changes Induced by the Prion [PSI+] Agnès Baudin-Baillieu,Rachel Legendre,Claire Kuchly,Isabelle Hatin,Stéphane Demaiset al. Cell Reports, 2014, 8 (2), pp.439-448. ⟨10.1016/j.celrep.2014.06.036⟩ Article dans une revue hal-04617983v1
Maintaining Two Mating Types: Structure of the Mating Type Locus and Its Role in Heterokaryosis in Podospora anserina Pierre Grognet,Frédérique Bidard,Claire Kuchly,Laetitia Chan Ho Tong,Evelyne Coppinet al. Genetics, 2014, 197 (1), pp.421-432. ⟨10.1534/genetics.113.159988⟩ Article dans une revue hal-03153569v1
Detection of non-coding RNA in bacteria and archaea using the DETR'PROK Galaxy pipeline Claire Toffano-Nioche,Yufei Luo,Claire Kuchly,Claire Wallon,Delphine D. Steinbachet al. Methods, 2013, 63 (1), pp.60 - 65. ⟨10.1016/j.ymeth.2013.06.003⟩ Article dans une revue hal-02648776v1

Poster de conférence (11)

Benchmarking of sequencing technologies for CpG methylation detection: applications to quail and pig Céline Vandecasteele,Paul Terzian,Joanna Lledo,Rémy-Félix Serre,Jules Sabbanet al. London Calling 2024, May 2024, Londres, United Kingdom Poster de conférence hal-04638952v1
Major contribution to the bovine pangenome: whole genome sequences, SNPs, and structural variants of 154 bulls from 14 breeds Amandine Suin,Camille Marcuzzo,Camille Eché,Andreea Dréau,Clément Birbeset al. Plant and Genome San Diego 2024, Jan 2024, San Diego, United States Poster de conférence hal-04432840v1
A Bos taurus sequencing methods benchmark for assembly, haplotyping, and variant calling Camille Eché,Carole Iampietro,Clément Birbes,Andreea Dréau,Claire Kuchlyet al. Plant and Genome San Diego 2024, Jan 2024, San Diego, United States. 10, 2024 Poster de conférence hal-04432803v1
Volume reduction and automation of DNAprep libraries for low pass sequencing Marcuzzo Camille,Cervin Guyomar,Amandine Suin,Adrien Castinel,Carole Iampietroet al. Assemblée générale France Génomique, Jun 2023, Paris, France Poster de conférence hal-04590691v1
Structural variants detection and de novo genome assembly of a maize line Carole Iampietro,Camille Eché,Clément Birbes,Arnaud Di Franco,Andreea Dréauet al. Plant & Animal Genome Conference (PAG) 2022, Jan 2022, San Diego, United States Poster de conférence hal-03541379v1
Preliminary results from Nanopore Q20+ sequencing Claire Kuchly,Jules Sabban,Eden Darnige,Camille Eché,Amandine Suinet al. JOBIM 2022 : Journées Ouvertes Biologie Informatique Mathématiques, Jul 2022, Rennes, France. 2022 Poster de conférence hal-03719401v1
De novo assembly of 90 bovines genomes using PacBio CLR application comparison and optimization Camille Marcuzzo,Amandine Suin,Camille Eché,Andreea Dreau,Clément Birbeset al. Assemblée générale France Génomique, Jun 2022, Paris, France Poster de conférence hal-04590746v1
Structural variants detection and de novo genome assembly of a Maize line Camille Eché,Clement Birbes,Carole Iampietro,Arnaud Di Franco,Andreea Dreauet al. SMRT Leiden 2021 – Young Investigator Virtual Conference, May 2021, virtuel, Netherlands Poster de conférence hal-03541316v1
De novo assembling 19 maize inbred lines of the European germplasm Carole Iampietro,Camille Eché,Clement Birbes,Andreea Dreau,Erwan Deniset al. 63rd Annual Maize Genetics Meeting, Mar 2021, virtuel, United States Poster de conférence hal-03539396v1
De novo assembly of bovine genome using PacBio applications Camille Eché,Clément Birbes,Carole Iampietro,Andreea Dréau,Claire Kuchlyet al. SMRT Leiden 2021 – Young Investigator Virtual Conference, May 2021, virtuel, Netherlands Poster de conférence hal-03541224v1
A Long Read project to find optimal technologic combinations for genome assembly and variability, epigenetic marks detection and metagenomic analysis Carole Iampietro,Camille Eché,Adrien Castinel,Rémy-Félix Serre,Christophe Kloppet al. PAG XXVIII, Plant and Animal Genome, Jan 2020, San Diego, United States. 2020 Poster de conférence hal-02947690v1

Communication dans un congrès (2)

Improvement of the Bos taurus Genome Assembly using New Sequencing Technologies Camille Eché,Carole Iampietro,Clement Birbes,Andreea Dreau,Claire Kuchlyet al. Discoveries Roadshow 2023 - PacBio, PacBio, May 2023, Paris, France Communication dans un congrès hal-04096124v1
Dynamic stability of the cyathostomin – gut microbiota interactions in horses Michel Boisseau,Sophie Dhorne-Pollet,David Bars,Elise Courtot,Delphine Serreauet al. Journées d'Animation Scientifique de la FéRI 2022 - FéRi Scientific Days 2022, Fédération de Recherche en Infectiologie (FéRI), Centre Val de Loire, Jul 2022, Joué-Lès-Tours, France Communication dans un congrès hal-03735407v1

Pré-publication, Document de travail (1)

Evaluation of the nemabiome approach for the study of equine strongylid communities Elise Courtot,Michel Boisseau,Sophie Dhorne-Pollet,Delphine Serreau,Amandine Gesbertet al. 2022 Pré-publication, Document de travail (preprint/prepublication) hal-03767915v1