
Claire Lemaitre
96
Documents
Publications
Publications
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Enhancing Microbial Genome Reconstruction in Complex Environments by combining Short-and Long-read Sequencing2025 - Journées scientifiques Agroécologie et Numérique, Jan 2025, Dijon, France. , pp.1-1, 2025
Poster de conférence
hal-04920790
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Mapler: Assessing assembly quality in taxonomically-rich metagenomes sequenced with HiFi reads2025 - Journées scientifiques Agroécologie et Numérique, Jan 2025, Dijon, France. , pp.1-1, 2025
Poster de conférence
hal-04941137
v1
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Exploring and quantifying the soil genetic diversity captured by long and short-read shotgun metagenomic sequencingJournées 2024 du programme Agroécologie et Numérique, Jan 2024, Rennes, France. , pp.1-1, 2024
Poster de conférence
hal-04423917
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Metagenomic assembly of complex ecosystems with highly accurate long-readsJournées 2024 du PEPR Agroécologie et Numérique, Jan 2024, Rennes, France. pp.1-1, 2024
Poster de conférence
hal-04425626
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Unlocking the Soil Microbiome: Unraveling Soil Microbial Complexity Using Long-Read MetagenomicsEAGS 2024 - The International Environmental and Agronomical Genomics symposium, Feb 2024, Toulouse, France. , pp.1-1, 2024
Poster de conférence
hal-04509213
v1
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SVJedi-graph: genotyping close and overlapping structural variants with a variation graph and long-readsJOBIM 2022 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2022, Rennes, France
Poster de conférence
hal-03885541
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SVJedi-graph: Structural Variant genotyping with long-reads using a variation graphJOBIM 2021 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2021, Paris, France. pp.1
Poster de conférence
hal-03441915
v1
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MTG-Link: filling gaps in draft genome assemblies with linked read dataBiodiversity Genomics 2020, Oct 2020, Online, France.
Poster de conférence
hal-03074227
v1
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MTG-Link: filling gaps in draft genome assemblies with linked read dataJOBIM 2020 - Journées Ouvertes Biologie, Informatique et Mathématiques, Jun 2020, Montpellier, France.
Poster de conférence
hal-03073966
v1
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SVJedi : Structural variation genotyping using long readsHiTSeq 2019 - Conference on High Throughput Sequencing, Jul 2019, Basel, Switzerland
Poster de conférence
hal-02290884
v1
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Reference guided genome assembly in metagenomic samplesRECOMB 2018 - 22nd International Conference on Research in Computational Molecular Biology, Apr 2018, Paris, France. pp.1
Poster de conférence
hal-01934823
v1
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Simka: large scale de novo comparative metagenomicsJOBIM 2017 - Journées Ouvertes Biologie Informatique Mathématiques, Jul 2017, Lille, France. , pp.234, 2017, JOBIM 2017 LILLE
Poster de conférence
hal-01595071
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Multi-scale characterization of symbiont diversity in the pea aphid complex through metagenomic approachesJOBIM 2017 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2017, Lille, France
Poster de conférence
hal-01638884
v1
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VCF$\_$creator: Mapping and VCF Creation features in DiscoSnp++JOBIM 2015, Jul 2015, Clermont-Ferrand, France
Poster de conférence
hal-01176492
v1
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Improvement of the assembly of heterozygous genomes of non-model organismsGenome Informatics, Oct 2015, Cold Spring Harbor Laboratory, United States. 2015
Poster de conférence
hal-01231793
v1
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Improvement of the assembly of heterozygous genomes of non-model organisms, a case study of the genomes of two Spodoptera frugiperda host strainsArthropod Genomics 2015, Jun 2015, Manhattan (Kansas), United States. 2015
Poster de conférence
hal-01240443
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Simka: fast kmer-based method for estimating the similarity between numerous metagenomic datasetsJOBIM 2015, Jul 2015, Clermont-Ferrand, France. , ⟨10.1093/Bioinforma-cs/btu406⟩
Poster de conférence
hal-01180603
v1
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Speeding up NGS software developmentSequencing, Finishing and Analysis in the Future Meeting, May 2014, Santa Fé, United States
Poster de conférence
hal-01088683
v1
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MindTheGap: integrated detection and assembly of short and long insertionsEuropean Conference on Computational Biology (ECCB), Sep 2014, Strasbourg, France. , ECCB 2014, 2014
Poster de conférence
hal-01087832
v1
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Bloocoo, a memory efficient read correctorEuropean Conference on Computational Biology (ECCB), Sep 2014, Strasbourg, France. ECCB 2014, 2014
Poster de conférence
hal-01092960
v1
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GATB: a software toolbox for genome assembly and analysisBio-IT World Conference, Apr 2014, Boston, United States
Poster de conférence
hal-01088641
v1
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Reference-free high-throughput SNP detection in pea: an example of discoSnp usage for a non-model complex genomeECCB 2014, Sep 2014, Strasbourg, France
Poster de conférence
hal-01091184
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Identification and correction of genome mis-assemblies due to heterozygosityEuropean Conference on Computational Biology (ECCB), Sep 2014, Strasbourg, France. , ECCB 2014, 2014
Poster de conférence
hal-01092959
v1
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Compareads: comparing huge metagenomic experiments13e édition des Journées Ouvertes en Biologie, Informatique et Mathématiques - JOBIM 2012, Jul 2012, Rennes, France. 2012
Poster de conférence
hal-00760332
v1
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Mapler: Assessing assembly quality in taxonomically rich metagenomes sequenced with HiFi reads2025
Pré-publication, Document de travail
hal-04993862
v1
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Pairwise graph edit distance characterizes the impact of the construction method on pangenome graphs2024
Pré-publication, Document de travail
hal-04871087
v1
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MTG-Link: leveraging barcode information from linked-reads to assemble specific loci2022
Pré-publication, Document de travail
(preprint/prepublication)
hal-03886951
v1
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Conserved and specific genomic features of endogenous polydnaviruses revealed by whole genome sequencing of two ichneumonid wasps2019
Pré-publication, Document de travail
(preprint/prepublication)
hal-02788577
v1
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Multiple Comparative Metagenomics using Multiset k-mer Counting2016
Pré-publication, Document de travail
hal-01300485
v1
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Pangenome graph manipulation for local visualisation with pancatMIGGS1 2024 - 1st symposium on Methods for Interfacing with Graphs of Genomic Sequences, Sep 2024, Lille, France. pp.1-1
Communication dans un congrès
hal-04724519
v1
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Understanding the limits of pangenome graphs for the analysis of large inversions in a complex of butterfly species2024 - International Environmental and Agronomical Genomics symposium, Feb 2024, Toulouse, France. pp.1-1
Communication dans un congrès
hal-04721489
v1
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Towards an edit distance between pangenome graphsDSB 2024 - Workshop Data Structures in Bioinformatics, Mar 2024, Montpellier, France. pp.1-1
Communication dans un congrès
hal-04725596
v1
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Assessing assembly quality in metagenomes of increasing complexity sequenced with HiFi long reads2024 - 24th Genome Informatics meeting, Nov 2024, Hinxton, United Kingdom. pp.1-21
Communication dans un congrès
hal-04822870
v1
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Towards an edit distance between pangenome graphsSeqBIM 2023 - Journées sur les Séquences en Bioinformatique, Informatique et Mathématiques, Nov 2023, Lille, France. pp.1-2
Communication dans un congrès
hal-04320771
v1
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Towards a better understanding of the low discovery rate of short-read based insertion variant callersJOBIM 2020 - Journées Ouvertes Biologie, Informatique et Mathématiques, Jun 2020, Montpellier, France
Communication dans un congrès
hal-03120668
v1
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Genotyping Structural Variations using Long Read dataJOBIM 2019 - Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2019, Nantes, France. pp.1-8
Communication dans un congrès
hal-02288091
v1
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Genotyping Structural Variations using Long Read DataHiTSeq 2019 - Conference on High Throughput Sequencing, Jul 2019, Basel, Switzerland. pp.1-3
Communication dans un congrès
hal-02289484
v1
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Reference-guided genome assembly in metagenomic samplesJOBIM 2019 - Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2019, Nantes, France. pp.1-8
Communication dans un congrès
hal-02308257
v1
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Multi-scale characterization of symbiont diversity in the pea aphid complex through metagenomic approachesInternational Conference on Holobionts, Apr 2017, Paris, France
Communication dans un congrès
hal-01638839
v1
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Mapping-free and assembly-free discovery of inversion breakpoints from raw NGS readsAlgorithms for Computational Biology, Jul 2014, Tarragona, Spain. pp.119-130, ⟨10.1007/978-3-319-07953-0_10⟩
Communication dans un congrès
hal-01063157
v3
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Analyse de transcriptomes de foies de canards par séquençage d’ARN (RNA-Seq)10. Journées de la Recherche Avicole et Palmipèdes à Foie Gras, La Rochelle., Mar 2013, La Rochelle, France
Communication dans un congrès
hal-01210404
v1
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Whole genome re-sequencing : lessons from unmapped readsJournées Ouvertes Biologie Informatique Mathématiques, Jul 2013, Toulouse, France
Communication dans un congrès
hal-00907446
v1
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Compareads: comparing huge metagenomic experimentsRECOMB Comparative Genomics 2012, Oct 2012, Niterói, Brazil
Communication dans un congrès
hal-00720951
v1
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MolliGen 3.0, evolution of a database dedicated to the comparative genomics of mollicutesCongress of the International Organization for Mycoplasmology ; 2010/07/11-16 ; Chianciano Terme (ITA). IOM congress 2010., 2010, Italy
Communication dans un congrès
hal-00649151
v1
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Molligen 3.0, evolution of a database dedicated to the comparative genomics of mollicutes18. Congress of the International Organization for Mycoplasmology, Jul 2010, Chianciano Terme, Italy
Communication dans un congrès
hal-02756212
v1
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Le SARS-CoV-2 : une expérience inédite de surveillance génomique mondiale2023
Article de blog scientifique
hal-04155812
v1
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Comment la bioinformatique a résolu le puzzle du génome du SARS-CoV-22022
Article de blog scientifique
hal-03896532
v1
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Comparaison et visualisation de graphes de pangénomesUniversité de rennes. 2023, pp.1-38
Rapport
(rapport de recherche)
hal-04213245
v1
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SARS-CoV-2 Through the Lens of Computational Biology: How bioinformatics is playing a key role in the study of the virus and its origins[Research Report] CNRS. 2021, pp.1-35
Rapport
(rapport de recherche)
hal-03170023
v1
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Precise detection of rearrangement breakpoints in mammalian chromosomes[Research Report] RR-6533, INRIA. 2008, pp.26
Rapport
(rapport de recherche)
inria-00278553
v2
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Métagénomique et métatranscriptomiqueDes séquences aux graphes. Méthodes et structures discrètes pour la bioinformatique, ISTE, pp.1-36, 2023, 9781789480665
Chapitre d'ouvrage
hal-04338891
v1
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Metagenomics and MetatranscriptomicsFrom Sequences to Graphs: Discrete Methods and Structures for Bioinformatics, ISTE, 2022, 9781789450668
Chapitre d'ouvrage
hal-03844316
v1
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De Novo NGS Data CompressionMourad Elloumi. Algorithms for Next-Generation Sequencing Data, Springer, pp.91-115, 2017, 978-3-319-59826-0. ⟨10.1007/978-3-319-59826-0_4⟩
Chapitre d'ouvrage
hal-01633718
v1
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MTG-LinkLogiciel hal-04823104 v1 |
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LEVIATHANLogiciel hal-04823122 v1 |
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LRezLogiciel hal-04823115 v1 |
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Méthodes bioinformatiques pour l'étude des Variants de Structure avec des données de séquençages génomiquesBio-informatique [q-bio.QM]. Université Rennes 1, 2021
HDR
tel-03497793
v1
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Réarrangements chromosomiques dans les génomes de mammifères : caractérisation des points de cassureBiochimie [q-bio.BM]. Université Claude Bernard - Lyon I, 2008. Français. ⟨NNT : ⟩
Thèse
tel-00364265
v1
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