Claudia Bartoli Junior Scientist at Institute of Genetics, Environment and Plant Protection (IGEPP), Institut national de recherche pour l'agriculture, l'alimentation et l'environnement (INRAE), France, Rennes

Identifiants chercheurs

IdHAL :

claudia-bartoli

ORCID :

0000-0003-1461-2983

IdRef :

270266348

VIAF :

101169017951166982659

Présentation

I am a young scientist focusing on the coevolution between plants and microbes. My principal scientific aim is bringing proof to the holobiont concept thanks to a novel experimental coevolutionary approach that my team and I have developed. For this I am using Brassica rapa fast-cycling plants and Synthetic Microbial Communities (SynComs) and joint-Genomic Wide Association modelling. The general idea is to follow both plant allele evolution and microbial mutations during several plant cycles (from seed to seed). I am also interested in developing biocontrol strategies that take into consideration microbial-microbial interactions and environmental constraints. I am also collaborating with the University of Rennes 1 to develop SynComs for Persistent Organic Pollutants degradation such us PFAS.

Publications

Article dans une revue (32)

Plant Genetic Bases Associated With Microbiota Descriptors Shed Light Into a Novel Holobiont Generalist Genes Theory Loeiz Maillet,Manon Norest,Adam Kautsky,Anna Geraci,Elisabetta Oddoet al. Environmental Microbiology, 2025, 27 (5), pp.e70108. ⟨10.1111/1462-2920.70108⟩ Article dans une revue hal-05090352v1
Combined cytogenetic and molecular methods for taxonomic verification and description of Brassica populations deriving from different origins Cyril Falentin,Houria Hadj-Arab,Fella Aissiou,Claudia Bartoli,Giuseppe Bazanet al. Genetic Resources, 2024, 5 (9), pp.61-71. ⟨10.46265/genresj.ryaj6068⟩ Article dans une revue hal-04608007v1
The genetic architecture of the adaptive potential of Arabidopsis thaliana in response to Pseudomonas syringae strains isolated from south-west France Claudia Bartoli,Mylène Rigal,Carine Huard-Chauveau,Baptiste Mayjonade,Fabrice Roux Plant Pathology, 2024, Plant Pathology, 73 (4), pp.884-897. ⟨10.1111/ppa.13849⟩ Article dans une revue hal-04423624v1
The genetic architecture of adaptation to leaf and root bacterial microbiota in Arabidopsis thaliana Fabrice Roux,Léa Frachon,Claudia Bartoli Molecular Biology and Evolution, 2023, 40 (5), pp.msad093. ⟨10.1093/molbev/msad093⟩ Article dans une revue hal-03806731v2
Corrigendum: Investigating genetic diversity within the most abundant and prevalent non-pathogenic leaf-associated bacteria interacting with Arabidopsis thaliana in natural habitats Daniela Ramírez-Sánchez,Chrystel Gibelin-Viala,Baptiste Mayjonade,Rémi Duflos,Elodie Belmonteet al. Frontiers in Microbiology, 2023, 14 (1304377), pp.1304377. ⟨10.3389/fmicb.2023.1304377⟩ Article dans une revue hal-04505635v1
Projet BrasExplor : élargir les ressources génétiques du CRB BrACySol pour Brassica oleracea et Brassica rapa Cyril Falentin,Vincent Richer,Pascal Glory,Gwenaëlle Deniot,Julie Ferreira de Carvalhoet al. NOV'AE - Numéros spéciaux, 2022, Numéro Spécial #2 RARe, pp.21-27. ⟨10.17180/novae-2022-NS02-art03⟩ Article dans une revue hal-03790700v1
Rhizobium leguminosarum symbiovar viciae strains are natural wheat endophytes that can stimulate root development Claudia Bartoli,Stéphane Boivin,Marta Marchetti,Carine Gris,Virginie Gasciolliet al. Environmental Microbiology, 2022, 24 (11), pp.5509-5523. ⟨10.1111/1462-2920.16148⟩ Article dans une revue hal-04204399v2
Molecular and Genomic Characterization of the Pseudomonas syringae Phylogroup 4: An Emerging Pathogen of Arabidopsis thaliana and Nicotiana benthamiana Diego Zavala,Isabel Fuenzalida,María Victoria Gangas,Micaela Peppino Margutti,Claudia Bartoliet al. Microorganisms, 2022, 10 (4), pp.707. ⟨10.3390/microorganisms10040707⟩ Article dans une revue hal-04204424v1
Rhizocarpon geographicum Lichen Discloses a Highly Diversified Microbiota Carrying Antibiotic Resistance and Persistent Organic Pollutant Tolerance Alice Miral,Adam Kautsky,Susete Alves Carvalho,Ludovic Cottret,Anne-Yvonne Guillerm-Erckelboudtet al. Microorganisms, 2022, 10 (9), pp.1859. ⟨10.3390/microorganisms10091859⟩ Article dans une revue hal-04204410v2
Investigating genetic diversity within the most abundant and prevalent non-pathogenic leaf-associated bacteria interacting with Arabidopsis thaliana in natural habitats Daniela Ramírez-Sánchez,Chrystel Gibelin-Viala,Baptiste Mayjonade,Rémi Duflos,Elodie Belmonteet al. Frontiers in Microbiology, 2022, 13, pp.984832. ⟨10.3389/fmicb.2022.984832⟩ Article dans une revue hal-03806728v1
Adaptation to plant communities across the genome of Arabidopsis thaliana Léa Frachon,Baptiste Mayjonade,Claudia Bartoli,Nina-Coralie R Hautekèete,Fabrice Roux Molecular Biology and Evolution, 2019, 36 (7), pp.1442-1456. ⟨10.1093/molbev/msz078⟩ Article dans une revue hal-02265398v1
In situ relationships between microbiota and potential pathobiota in Arabidopsis thaliana Claudia Bartoli,Léa Frachon,Matthieu Barret,Mylène Rigal,Carine Huard-Chauveauet al. The International Society of Microbiologial Ecology Journal, 2018, 12 (8), pp.2024-2038. ⟨10.1038/s41396-018-0152-7⟩ Article dans une revue hal-02373577v1
Two-way mixed-effects methods for joint association analysis using both host and pathogen genomes Miaoyan Wang,Fabrice Roux,Claudia Bartoli,Carine Huard-Chauveau,Christopher Meyeret al. Proceedings of the National Academy of Sciences of the United States of America, 2018, 115 (24), pp.E5440-E5449. ⟨10.1073/pnas.1710980115⟩ Article dans une revue hal-01806895v1
A Genomic Map of Climate Adaptation in Arabidopsis thaliana at a Micro-Geographic Scale Léa Frachon,Claudia Bartoli,Sebastien Carrere,Olivier Bouchez,Adeline Chaubetet al. Frontiers in Plant Science, 2018, 9, ⟨10.3389/fpls.2018.00967⟩ Article dans une revue hal-02373598v1
Two-way mixed-effects methods for joint association analysis using both host and pathogen genomes Miaoyan Wang,Fabrice Roux,Claudia Bartoli,Carine Huard-Chauveau,Christopher Meyeret al. Proceedings of the National Academy of Sciences of the United States of America, 2018, 115 (24), ⟨10.1073/pnas.1710980115⟩ Article dans une revue hal-04204489v1
Genome-Wide Association Studies In Plant Pathosystems: Toward an Ecological Genomics Approach Claudia Bartoli,Fabrice Roux Frontiers in Plant Science, 2017, 8, ⟨10.3389/fpls.2017.00763⟩ Article dans une revue hal-04204877v1
Genome-Wide Association Studies In Plant Pathosystems: Toward an Ecological Genomics Approach Claudia Bartoli,Fabrice Roux Frontiers in Plant Science, 2017, 8, ⟨10.3389/fpls.2017.00763⟩ Article dans une revue hal-04204537v1
Genome-wide association studies in plant pathosystems: toward an ecological genomics approach. Fabrice Roux,Claudia Bartoli Frontiers in Plant Science, 2017, 8, ⟨10.3389/fpls.2017.00763⟩ Article dans une revue (article de synthèse) hal-01606059v1
Molecular mechanisms underlying the emergence of bacterial pathogens: an ecological perspective Claudia Bartoli,Fabrice Roux,Jay Ram Lamichhane Molecular Plant Pathology, 2016, 17 (2), pp.303-310. ⟨10.1111/mpp.12284⟩ Article dans une revue hal-04204886v1
Extensive field survey, laboratory and greenhouse studies reveal complex nature of &lt;em&gt;Pseudomonas Syringae-Associated&lt;/em&gt; hazelnut decline in central italy Jay Ram Lamichhane,Claudia Bartoli,Leonardo Varvaro PLoS ONE, 2016, 11 (2), pp.1-15. ⟨10.1371/journal.pone.0147584⟩ Article dans une revue hal-02629555v1
Molecular mechanisms underlying the emergence of bacterial pathogens: an ecological perspective Claudia Bartoli,Fabrice Roux,Jay Ram Lamichhane Molecular Plant Pathology, 2016, 17 (1), pp.303-310. ⟨10.1111/mpp.12284⟩ Article dans une revue (article de synthèse) hal-02637743v1
A set of PCRs for rapid identification and characterization of Pseudomonas syringae phylogroups Benoit Borschinger,Claudia Bartoli,Charlotte Chandeysson,Caroline Guilbaud,Luciana Parisiet al. Journal of Applied Microbiology, 2016, 120 (3), pp.714-723. ⟨10.1111/jam.13017⟩ Article dans une revue hal-01444672v1
Extensive Field Survey, Laboratory and Greenhouse Studies Reveal Complex Nature of Pseudomonas syringae-Associated Hazelnut Decline in Central Italy Jay Ram Lamichhane,Claudia Bartoli,Leonardo Varvaro PLoS ONE, 2016, 11 (2), pp.e0147584. ⟨10.1371/journal.pone.0147584⟩ Article dans une revue hal-04204883v1
A set of PCRs for rapid identification and characterization of Pseudomonas syringae phylogroups Benoit Borschinger,Claudia Bartoli,Charlotte Chandeysson,Caroline Guilbaud,Luciana Parisiet al. Journal of Applied Microbiology, 2016, 120 (3), pp.903. ⟨10.1111/jam.13219⟩ Article dans une revue hal-01444626v1
Mutability in &lt;em&gt;Pseudomonas viridiflava&lt;/em&gt; as a programmed balance between antibiotic resistance and pathogenicity Claudia Bartoli,Jay Ram Lamichhane,Odile Berge,Leonardo Varvaro,Cindy E. Morris Molecular Plant Pathology, 2015, 16 (8), pp.860-869. ⟨10.1111/mpp.12243⟩ Article dans une revue hal-02633614v1
Un cadre pour évaluer le potentiel d’émergence d’agents phytopathogènes Patricia Le Crenn,Cindy E. Morris,Odile Berge,Claudia Bartoli Lettre aux Entreprises - INRA, 2015, N° 74, Juin 2015 Article dans une revue hal-02637034v1
A framework to gauge the epidemic potential of plant pathogens in environmental reservoirs: the example of kiwifruit canker Claudia Bartoli,Jay Ram Lamichhane,Odile Berge,Caroline Guilbaud,Leonardo Varvaroet al. Molecular Plant Pathology, 2015, 16 (2), pp.137 - 149. ⟨10.1111/mpp.12167⟩ Article dans une revue hal-02637074v1
Whole-genome sequencing of 10&lt;em&gt; Pseudomonas syringae&lt;/em&gt; strains representing different host range spectra Claudia Bartoli,Sebastien Carrere,Jay Ram Lamichhane,Leonardo Varvaro,Cindy E. Morris Genome Announcements, 2015, 3 (2), pp.e00379-15. ⟨10.1128/genomeA.00379-15⟩ Article dans une revue hal-02632911v1
Plant pathogenic bacteria in open irrigation systems: what risk for crop health? J. Lamichhane,Claudia Bartoli Plant Pathology, 2015, 64 (4), pp.757-766. ⟨10.1111/ppa.12371⟩ Article dans une revue hal-04204943v1
Plant pathogenic bacteria in open irrigation systems: what risk for crop health? Jay Ram Lamichhane,Claudia Bartoli Plant Pathology, 2015, 64 (4), pp.757-766. ⟨10.1111/ppa.12371⟩ Article dans une revue (article de synthèse) hal-02640028v1
The Pseudomonas viridiflava phylogroups in the P. syringae species complex are characterized by genetic variability and phenotypic plasticity of pathogenicity-related traits. Claudia Bartoli,Odile Berge,Caroline Monteil,Caroline Guilbaud,Giorgio M. Balestraet al. Environmental Microbiology, 2014, 16 (7), pp.2301-2315. ⟨10.1111/1462-2920.12433⟩ Article dans une revue hal-02638544v1
A user's guide to a data base of the diversity of&lt;em&gt; Pseudomonas syringae&lt;/em&gt; and its application to classifying strains in this phylogenetic complex Odile Berge,Caroline Monteil,Claudia Bartoli,Charlotte Chandeysson,Caroline Guilbaudet al. PLoS ONE, 2014, 9 (9), pp.e105547. ⟨10.1371/journal.pone.0105547⟩ Article dans une revue hal-02640865v1

Communication dans un congrès (7)

A genomic map of local adaptation in Arabidopsis thaliana to native non-pathogenic bacteria: from mono-infections to complex communities Fabrice Roux,Daniela Ramírez-Sánchez,Rémi Duflos,Chrystel Gibelin-Viala,Baptiste Mayjonadeet al. Symposium on Environmental and Agronomical Genomics organisé par France Génomique and the Research Group “Environmental Genomics", Feb 2024, Toulouse, France Communication dans un congrès hal-04654308v1
Le potentiel symbiotique des microorganismes du sol et les leviers d'intervention Pierre-Emmanuel Courty,Claudia Bartoli,Benoît Lefebvre,Juliana Almario,Cécile Revellin Plant2pro, Sep 2021, Sophia-Antipolis, France Communication dans un congrès hal-03593578v1
New multiplex PCR method for rapid characterization of the genetic diversity of &lt;em&gt;Pseudomonas syringae&lt;/em&gt; in orchards and crops Benoit Borschinger,Charlotte Chandeysson,Claudia Bartoli,Caroline Guilbaud,Luciana Parisiet al. Innovation in Integrated & Organic Horticulture, INNOHORT 2015, Université d'Avignon et des Pays de Vaucluse (UAPV). FRA., Jun 2015, Avignon, France Communication dans un congrès hal-02738776v1
Du nouveau dans le groupe&lt;em&gt; Pseudomonas syringae&lt;/em&gt; : un cadre général de classification et des outils simples et rapides d'identification Odile Berge,Claudia Bartoli,Caroline Guilbaud,Charlotte Chandeysson,Cindy E. Morriset al. 1. Colloque R-Syst / Muséum national d'histoire naturelle, Oct 2015, Versailles, France Communication dans un congrès hal-02740515v1
A broad and operational classification framework to address the ecology of&lt;em&gt; Pseudomonas syringae&lt;/em&gt; populations Odile Berge,Caroline Monteil,Claudia Bartoli,Caroline Guilbaud,Charlotte Chandeyssonet al. 9. International Conference on Pseudomonas syringae and related pathogens, Universidad de Málaga (Málaga). ESP.; Universidad Politécnica de Madrid (UPM). ESP.; Universidad de Navarra (Pamplona). ESP., Jun 2015, Malaga, Spain Communication dans un congrès hal-02740206v1
Caractérisation rapide de la diversité génétique des populations de &lt;em&gt;Pseudomonas syringae&lt;/em&gt; dans les vergers et cultures par PCR multiplex Benoit Borschinger,Charlotte Chandeysson,Claudia Bartoli,Caroline Guilbaud,Luciana Parisiet al. 7. Journées des Doctorants SPE, Jul 2015, Rennes, France Communication dans un congrès hal-02740524v1
From the ecology of Pseudomonas syringae to probable scenarios of future disease emergence Cindy E. Morris,Claudia Bartoli,Jay Ram Lamichhane,Caroline Monteil,Odile Berge 13. International Conference on Plant Pathogenic Bacteria (ICPPB), Jun 2014, Shanghai, China. 126 p Communication dans un congrès hal-02738607v1

Pré-publication, Document de travail (4)

Warnings/Cautions when collecting Brassica diversity along a large climatic gradient Cyril Falentin,Houria Hadj-Arab,Fella Aissiou,Claudia Bartoli,Giuseppe Bazanet al. 2024 Pré-publication, Document de travail hal-04701870v1
Unraveling the genetic architecture of the adaptive potential of &lt;i&gt;Arabidopsis thaliana&lt;/i&gt; to face the bacterial pathogen &lt;i&gt;Pseudomonas syringae&lt;/i&gt; in the context of global change Claudia Bartoli,Mylène Rigal,Baptiste Mayjonade,Fabrice Roux 2023 Pré-publication, Document de travail hal-04204431v1
Rhizobium leguminosarum symbiovar viciae strains are natural wheat endophytes and can stimulate root development and colonization by arbuscular mycorrhizal fungi Claudia Bartoli,Stéphane Boivin,Marta Marchetti,Carine Gris,Virginie Gasciolliet al. 2020 Pré-publication, Document de travail hal-02967159v1
Genetic variants affecting plant size and chemical defenses jointly shape herbivory in Arabidopsis Andrew D Gloss,Benjamin Brachi,Mitchell J Feldmann,Simon C Groen,Claudia Bartoliet al. 2023 Pré-publication, Document de travail hal-02947607v1

Chapitre d'ouvrage (2)

Agroecological Protection to Support Plant Health: Where the Microbiota Fits In Claudia Bartoli,Jean-Noël Aubertot,Isabelle Litrico,Christophe Mougel Xavier Fauvergue; Adrien Rusch; Matthieu Barret; Marc Bardin; Emmanuelle Jacquin-Joly; Thibaut Malausa; Christian Lannou. Extended Biocontrol, Springer Netherlands, pp.119-125, 2022, 978-94-024-2150-7. ⟨10.1007/978-94-024-2150-7_10⟩ Chapitre d'ouvrage hal-04181895v1
Protection agroécologique pour le maintien de la santé des plantes Claudia Bartoli,Jean-Noël Aubertot,Isabelle Litrico-Chiarelli,Christophe Mougel Biocontrôle. Éléments pour une protection agroécologique des cultures., Éditions Quae, 376p., 2020, Savoir faire, 978-2-7592-3076-1 Chapitre d'ouvrage hal-04204459v1

Poster de conférence (2)

Mise à jour de la classification du groupe&lt;em&gt; Pseudomonas syringae&lt;/em&gt; et des outils simples et rapides d'identification Charlotte Chandeysson,Odile Berge,Claudia Bartoli,Benoit Borschinger,Caroline Guilbaudet al. 12. Rencontres Plantes-Bactéries, Jan 2016, Aussois, France. , 1 p., 2016, 12ièmes Rencontres Plantes-Bactéries, 11-15 janvier 2016, Centre Paul Langevin 75300 Aussois Poster de conférence hal-02742317v1
Impact of ground cover on &lt;em&gt;Pseudomonas syringae&lt;/em&gt; communities in kiwifruit orchards Benoit Borschinger,Christelle Lacroix,Charlotte Chandeysson,Caroline Guilbaud,Luciana Parisiet al. 10. International symposium on phyllosphere microbiology, Jul 2015, Ascona, Switzerland. 2015 Poster de conférence hal-02743486v1

Thèse (1)

Importance of environmental habitats as a reservoir of phytopathogenic bacteria and their role in the evolution of pathogenicity traits AGR/12 Claudia Bartoli Biodiversity and Ecology. Tuscia University, 2014. English. ⟨NNT : ⟩ Thèse tel-02793997v1