Colomban de Vargas Research director - DR1 - CNRS

Identifiants chercheurs

IdHAL :

colomban-de-vargas

ORCID :

0000-0002-6476-6019

IdRef :

144372401

VIAF :

3161155566458213380006

Publications

Article dans une revue (166)

Coral microbiomes as reservoirs of unknown genomic and biosynthetic diversity Fabienne Wiederkehr,Lucas Paoli,Daniel Richter,Dora Racunica,Hans-Joachim Ruscheweyhet al. Nature, 2026, 652 (8110), pp.686-693. ⟨10.1038/s41586-026-10159-6⟩ Article dans une revue hal-05607741v1
The southern gap in ocean microbiome science Hugo Sarmento,Paula Huber,Célio Dias Santos-Júnior,André Abreu,Thulani Makhalanyaneet al. Ocean Microbiology, 2025, 1 (1), pp.6. ⟨10.1186/s44375-025-00006-w⟩ Article dans une revue hal-05334436v1
Genome-resolved biogeography of Phaeocystales, cosmopolitan bloom-forming algae Zoltán Füssy,Robert Lampe,Kevin Arrigo,Kerrie Barry,Margaret Brisbinet al. Nature Communications, 2025, 16 (1), pp.8559. ⟨10.1038/s41467-025-63565-1⟩ Article dans une revue hal-05292826v1
Nitrogen concentration shapes the size structure and the functional diversity of phytoplankton communities in the southern Indian Ocean Hugo Berthelot,Joanna Zukowska,Nicolas Henry,Cyril Noël,Melilotus Thyssenet al. ISME Communications, 2025, 5 (1), pp.ycaf195. ⟨10.1093/ismeco/ycaf195⟩ Article dans une revue hal-05403677v1
Meiofauna investigation and taxonomic identification through imaging—a game of compromise Valentin Foulon,Abdesslam Benzinou,Kamal Nasreddine,Abdul Qayyum,Edwin Dachéet al. Limnology and Oceanography: Methods, 2025, 23 (7), pp.482-499. ⟨10.1002/lom3.10690⟩ Article dans une revue hal-05315714v1
Omics exploration of deep-sea biodiversity: data from the “Pourquoi Pas les Abysses?” and eDNAbyss projects Sophie Arnaud-Haond,Blandine Trouche,Cathy Liautard-Haag,Karine Alain,Johanne Aubéet al. Scientific Data , 2025, 12 (1), pp.1982. ⟨10.1038/s41597-025-06009-1⟩ Article dans une revue hal-05434404v1
Patterns and drivers of diatom diversity and abundance in the global ocean Juan Pierella Karlusich,Karen Cosnier,Lucie Zinger,Nicolas Henry,Charlotte Nefet al. Nature Communications, 2025, 16 (1), pp.3452. ⟨10.1038/s41467-025-58027-7⟩ Article dans une revue hal-05138560v1
Satellite Data Sharing for Scientific Inter-Group Cooperation Using the Leaflet R Package Christian Marchese,Emmanuel Boss,Federico Falcini,David Doxaran,Colomban de Vargaset al. Oceanography, 2024, 37 (3), ⟨10.5670/oceanog.2024.513⟩ Article dans une revue hal-04887465v1
How marine are Marine Stramenopiles (MAST)? A cross-system evaluation Aleix Obiol,Javier del Campo,Colomban de Vargas,Frédéric Mahé,Ramon Massana FEMS Microbiology Ecology, 2024, 100 (11), pp.fiae130. ⟨10.1093/femsec/fiae130⟩ Article dans une revue hal-04807648v1
Global distribution, diversity, and ecological niche of Picozoa, a widespread and enigmatic marine protist lineage Paula Huber,Daniele de Angelis,Hugo Sarmento,Sebastian Metz,Caterina Gineret al. Microbiome, 2024, 12 (1), pp.162. ⟨10.1186/s40168-024-01874-1⟩ Article dans une revue hal-04908385v1
Sea surface temperature reconstruction in the Pacific Ocean using multi-elemental proxy in Porites and Diploastrea corals: Application to Palau Archipelago Marine Canesi,Éric Douville,Paolo Montagna,Louise Bordier,Sandrine Caquineauet al. Chemical Geology, 2024, 645, pp.121884. ⟨10.1016/j.chemgeo.2023.121884⟩ Article dans une revue hal-04337163v1
Genome-resolved biogeography of Phaeocystales, cosmopolitan bloom-forming algae Andrew Allen,Zoltán Füssy,Robert Lampe,Kevin Arrigo,Kerrie Barryet al. Research Square - Preprint, 2024, ⟨10.21203/rs.3.rs-4339559/v1⟩ Article dans une revue hal-04908358v1
The global genetic diversity of planktonic foraminifera reveals the structure of cryptic speciation in plankton Raphaël Morard,Kate Darling,Agnes Weiner,Christiane Hassenrück,Chiara Vanniet al. Biological Reviews, 2024, 99 (4), pp.1218-1241. ⟨10.1111/brv.13065⟩ Article dans une revue hal-04552961v1
O short'branch Microsporidia, where art thou? Identifying diversity hotspots for future sampling Megan Gross,Ľubomír Rajter,Frédéric Mahé,David Bass,Cédric Berneyet al. European Journal of Protistology, 2024, 96, pp.126119. ⟨10.1016/j.ejop.2024.126119⟩ Article dans une revue hal-04908383v1
Benthic foraminifera as bio-indicators of natural and anthropogenic conditions in Roscoff Aber Bay (Brittany, France) Edwin Daché,Pierre-Antoine Dessandier,Ranju Radhakrishnan,Valentin Foulon,Loïc Michelet al. PLoS ONE, 2024, 19 (10), pp.e0309463. ⟨10.1371/journal.pone.0309463⟩ Article dans une revue hal-04807627v1
Multi-omics determination of metabolome diversity in natural coral populations in the Pacific Ocean Maggie M Reddy,Corentine Goossens,Yuxiang Zhou,Slimane Chaib,Delphine Raviglioneet al. Communications Earth & Environment, 2023, 4 (1), pp.281. ⟨10.1038/s43247-023-00942-y⟩ Article dans une revue hal-04184949v1
Host transcriptomic plasticity and photosymbiotic fidelity underpin $Pocillopora$ acclimatization across thermal regimes in the Pacific Ocean Eric J Armstrong,Julie Lê-Hoang,Quentin Carradec,Jean-Marc Aury,Benjamin Noelet al. Nature Communications, 2023, 14, pp.3056. ⟨10.1038/s41467-023-38610-6⟩ Article dans une revue cea-04171796v1
Pervasive tandem duplications and convergent evolution shape coral genomes Benjamin Noel,France Denoeud,Alice Rouan,Carol Buitrago-López,Laura Capassoet al. Genome Biology, 2023, 24 (1), pp.123. ⟨10.1186/s13059-023-02960-7⟩ Article dans une revue hal-04117388v1
Global perspective of environmental distribution and diversity of Perkinsea (Alveolata) explored by a meta-analysis of eDNA surveys Sebastian Metz,Sarah Itoïz,Aleix Obiol,Evelyne Derelle,Ramon Massanaet al. Scientific Reports, 2023, 13 (1), pp.20111. ⟨10.1038/s41598-023-47378-0⟩ Article dans une revue hal-04298429v1
Disparate genetic divergence patterns in three corals across a pan-Pacific environmental gradient highlight species-specific adaptation Christian R Voolstra,Benjamin C C Hume,Eric J Armstrong,Guinther Mitushasi,Barbara Porroet al. npj Biodiversity, 2023, 2 (1), pp.15. ⟨10.1038/s44185-023-00020-8⟩ Article dans une revue hal-04157744v1
Telomere DNA length regulation is influenced by seasonal temperature differences in short-lived but not in long-lived reef-building corals Alice Rouan,Mélanie Pousse,Nadir Djerbi,Barbara Porro,Guillaume Bourdinet al. Nature Communications, 2023, 14 (1), pp.3038. ⟨10.1038/s41467-023-38499-1⟩ Article dans une revue cea-04171809v1
Viral infection impacts the 3D subcellular structure of the abundant marine diatom Guinardia delicatula Marie Walde,Cyprien Camplong,Colomban de Vargas,Anne-Claire Baudoux,Nathalie Simon Frontiers in Marine Science, 2023, 9, ⟨10.3389/fmars.2022.1034235⟩ Article dans une revue hal-04057706v1
Top abundant deep ocean heterotrophic bacteria can be retrieved by cultivation Isabel Sanz-Sáez,Pablo Sánchez,Guillem Salazar,Shinichi Sunagawa,Colomban de Vargaset al. ISME Communications, 2023, 3 (1), ⟨10.1038/s43705-023-00290-0⟩ Article dans une revue cea-04481824v1
Diversity of the Pacific Ocean coral reef microbiome Pierre Galand,Hans-Joachim Ruscheweyh,Guillem Salazar,Corentin Hochart,Nicolas Henryet al. Nature Communications, 2023, 14 (1), pp.3039. ⟨10.1038/s41467-023-38500-x⟩ Article dans une revue hal-04176291v1
Endogenous viral elements reveal associations between a non-retroviral RNA virus and symbiotic dinoflagellate genomes Alex Veglia,Kalia Bistolas,Christian Voolstra,Benjamin Hume,Hans-Joachim Ruscheweyhet al. Communications Biology, 2023, 6 (1), pp.566. ⟨10.1038/s42003-023-04917-9⟩ Article dans une revue hal-04176296v2
Integrative omics framework for characterization of coral reef ecosystems from the Tara Pacific expedition Caroline Belser,Julie Poulain,Karine Labadie,Frederick Gavory,Adriana Albertiet al. Scientific Data , 2023, 10 (1), pp.326. ⟨10.1038/s41597-023-02204-0⟩ Article dans une revue hal-04176297v3
Pan-Arctic plankton community structure and its global connectivity Federico M Ibarbalz,Nicolas Henry,Frédéric Mahé,Mathieu Ardyna,Adriana Zingoneet al. Elementa: Science of the Anthropocene, 2023, 11 (1), pp.00060. ⟨10.1525/elementa.2022.00060⟩ Article dans une revue hal-04267640v1
Differences in carbonate chemistry up-regulation of long-lived reef-building corals Marine Canesi,Éric Douville,Paolo Montagna,Marco Taviani,Jarosław Stolarskiet al. Scientific Reports, 2023, 13 (1), pp.11589. ⟨10.1038/s41598-023-37598-9⟩ Article dans une revue cea-04170119v1
Open science resources from the Tara Pacific expedition across coral reef and surface ocean ecosystems Fabien Lombard,Guillaume Bourdin,Stéphane Pesant,Sylvain Agostini,Alberto Baudenaet al. Scientific Data , 2023, 10 (1), pp.324. ⟨10.1038/s41597-022-01757-w⟩ Article dans une revue (data paper) hal-04164118v1
Predicting global distributions of eukaryotic plankton communities from satellite data Hiroto Kaneko,Hisashi Endo,Nicolas Henry,Cédric Berney,Frédéric Mahéet al. ISME Communications, 2023, 3 (1), pp.101. ⟨10.1038/s43705-023-00308-7⟩ Article dans une revue hal-04394784v1
Ocean-wide comparisons of mesopelagic planktonic community structures Janaina Rigonato,Marko Budinich,Alejandro Murillo,Manoela Brandão,Juan Pierella Karlusichet al. ISME Communications, 2023, 3 (1), pp.83. ⟨10.1038/s43705-023-00279-9⟩ Article dans une revue hal-04184772v1
Ecology of Endozoicomonadaceae in three coral genera across the Pacific Ocean Corentin Hochart,Lucas Paoli,Hans-Joachim Ruscheweyh,Guillem Salazar,Emilie Boissinet al. Nature Communications, 2023, 14 (1), pp.3037. ⟨10.1038/s41467-023-38502-9⟩ Article dans une revue hal-04176293v1
Different environmental response strategies in sympatric corals from Pacific Islands Barbara Porro,Thamilla Zamoum,Didier Forcioli,Eric Gilson,Adrien Poquetet al. Communications Earth & Environment, 2023, 4 (1), pp.311. ⟨10.1038/s43247-023-00946-8⟩ Article dans une revue hal-04205154v1
Convergent evolution and horizontal gene transfer in Arctic Ocean microalgae Richard Dorrell,Alan Kuo,Zoltan Füssy,Elisabeth Richardson,Asaf Salamovet al. Life Science Alliance, 2022, 6 (3), pp.e202201833. ⟨10.26508/lsa.202201833⟩ Article dans une revue hal-03859139v1
Basin-Scale Underway Quantitative Survey of Surface Microplankton Using Affordable Collection and Imaging Tools Deployed From Tara Zoé Mériguet,Anna Oddone,David Le Guen,Thibaut Pollina,Romain Bazileet al. Frontiers in Marine Science, 2022, 9, ⟨10.3389/fmars.2022.916025⟩ Article dans une revue hal-03877194v1
Patterns of eukaryotic diversity from the surface to the deep-ocean sediment Tristan Cordier,Inès Barrenechea Angeles,Nicolas Henry,Franck Lejzerowicz,Cédric Berneyet al. Science Advances , 2022, 8 (5), ⟨10.1126/sciadv.abj9309⟩ Article dans une revue hal-03561462v1
Functional repertoire convergence of distantly related eukaryotic plankton lineages abundant in the sunlit ocean Tom Delmont,Morgan Gaia,Damien Hinsinger,Paul Frémont,Chiara Vanniet al. Cell Genomics, 2022, 2 (5), pp.100123. ⟨10.1016/j.xgen.2022.100123⟩ Article dans une revue hal-03872935v2
EukProt: A database of genome-scale predicted proteins across the diversity of eukaryotes Daniel Richter,Cédric Berney,Jürgen Strassert,Yu-Ping Poh,Emily Hermanet al. Peer Community Journal, 2022, 2, pp.e56. ⟨10.24072/pcjournal.173⟩ Article dans une revue hal-03971621v2
Plankton Planet: A frugal, cooperative measure of aquatic life at the planetary scale Colomban de Vargas,Noan Le Bescot,Thibaut Pollina,Nicolas Henry,Sarah Romacet al. Frontiers in Marine Science, 2022, 9, pp.936972. ⟨10.3389/fmars.2022.936972⟩ Article dans une revue hal-03788523v1
PlanktoScope: Affordable Modular Quantitative Imaging Platform for Citizen Oceanography Thibaut Pollina,Adam Larson,Fabien Lombard,Hongquan Li,David Le Guenet al. Frontiers in Marine Science, 2022, 9, ⟨10.3389/fmars.2022.949428⟩ Article dans une revue hal-03971225v1
Exploring the phycosphere of Emiliania huxleyi : from bloom dynamics to microbiome assembly experiments Mariana Câmara dos Reis,Sarah Romac,Florence Le Gall,Dominique Marie,Miguel Fradaet al. Molecular Ecology, In press, ⟨10.1111/mec.16829⟩ Article dans une revue hal-03596404v3
A robust approach to estimate relative phytoplankton cell abundances from metagenomes Juan José Pierella Karlusich,Eric Pelletier,Lucie Zinger,Fabien Lombard,Adriana Zingoneet al. Molecular Ecology Resources, 2022, 23 (1), pp.16-40. ⟨10.1111/1755-0998.13592⟩ Article dans une revue hal-03559541v1
Priorities for ocean microbiome research Andre Abreu,Etienne Bourgois,Adam Gristwood,Romain Troublé,Silvia Acinaset al. Nature Microbiology, 2022, 7 (7), pp.937-947. ⟨10.1038/s41564-022-01145-5⟩ Article dans une revue hal-03781942v1
Swarm v3: towards tera-scale amplicon clustering Frédéric Mahé,Lucas Czech,Alexandros Stamatakis,Christopher Quince,Colomban de Vargaset al. Bioinformatics, 2022, 38 (1), pp.267-269. ⟨10.1093/bioinformatics/btab493⟩ Article dans une revue hal-03284105v1
Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems Daniel Richter,Romain Watteaux,Thomas Vannier,Jade Leconte,Paul Frémontet al. eLife, 2022, 11, pp.e78129. ⟨10.7554/eLife.78129⟩ Article dans une revue hal-02399723v2
Seasonal dynamics of marine protist communities in tidally mixed coastal waters Mariarita Caracciolo,Fabienne Rigaut-Jalabert,Sarah Romac,Frédéric Mahé,Samuel Forsanset al. Molecular Ecology, 2022, 31 (14), pp.3761-3783. ⟨10.1111/mec.16539⟩ Article dans une revue hal-03781932v1
The Ocean Barcode Atlas: a web service to explore the biodiversity and biogeography of marine organisms. Caroline Vernette,Nicolas Henry,Julien Lecubin,Colomban de Vargas,Pascal Hingampet al. Molecular Ecology Resources, 2021, ⟨10.1111/1755-0998.13322⟩ Article dans une revue hal-03115219v1
Global distribution patterns of marine nitrogen-fixers by imaging and molecular methods Juan José Pierella Karlusich,Eric Pelletier,Fabien Lombard,Madeline Carsique,Etienne Dvoraket al. Nature Communications, 2021, 12, pp.4160. ⟨10.1038/s41467-021-24299-y⟩ Article dans une revue hal-03334117v2
Environmental vulnerability of the global ocean epipelagic plankton community interactome Samuel Chaffron,Erwan Delage,Marko Budinich,Damien Vintache,Nicolas Henryet al. Science Advances , 2021, 7 (35), pp.eabg1921. ⟨10.1126/sciadv.abg1921⟩ Article dans une revue hal-03443359v2
High and specific diversity of protists in the deep-sea basins dominated by diplonemids, kinetoplastids, ciliates and foraminiferans Alexandra Schoenle,Manon Hohlfeld,Karoline Hermanns,Frédéric Mahé,Colomban de Vargaset al. Communications Biology, 2021, 4 (1), pp.501. ⟨10.1038/s42003-021-02012-5⟩ Article dans une revue hal-03208049v1
Macroscale patterns of oceanic zooplankton composition and size structure Manoela Brandão,Fabio Benedetti,Séverine Martini,Yawouvi Dodji Soviadan,Jean-Olivier Irissonet al. Scientific Reports, 2021, 11 (1), pp.15714. ⟨10.1038/s41598-021-94615-5⟩ Article dans une revue hal-03318806v1
Eukaryotic virus composition can predict the efficiency of carbon export in the global ocean Hiroto Kaneko,Romain Blanc-Mathieu,Hisashi Endo,Samuel Chaffron,Tom Delmontet al. iScience, 2021, 24 (1), pp.102002. ⟨10.1016/j.isci.2020.102002⟩ Article dans une revue hal-03097258v3
Protist taxonomic and functional diversity in soil, freshwater and marine ecosystems David Singer,Christophe V W Seppey,Guillaume Lentendu,Micah Dunthorn,David Basset al. Environment International, 2021, 146, pp.106262. ⟨10.1016/j.envint.2020.106262⟩ Article dans une revue hal-03028115v1
Phytoplankton taxonomic and functional diversity patterns across a coastal tidal front Pierre Ramond,Raffaele Siano,Sophie Schmitt,Colomban de Vargas,Louis Mariéet al. Scientific Reports, 2021, 11, pp.2682. ⟨10.1038/s41598-021-82071-0⟩ Article dans une revue hal-03127061v1
Large scale patterns of marine diatom richness: Drivers and trends in a changing ocean Greta Busseni,Luigi Caputi,Roberta Pirazzini,Paul Fremont,Bruno Hay Meleet al. Global Ecology and Biogeography, 2020, 29 (11), pp.1915-1928. ⟨10.1111/geb.13161⟩ Article dans une revue hal-02992584v1
Tara Pacific Expedition’s Atmospheric Measurements of Marine Aerosols across the Atlantic and Pacific Oceans: Overview and Preliminary Results J. Flores,G. Bourdin,O. Altaratz,M. Trainic,N. Lang-Yonaet al. Bulletin of the American Meteorological Society, 2020, 101 (5), pp.E536-E554. ⟨10.1175/BAMS-D-18-0224.1⟩ Article dans une revue hal-02967981v1
Tara Oceans: towards global ocean ecosystems biology Shinichi Sunagawa,Silvia Acinas,Peer Bork,Chris Bowler,Silvia Acinaset al. Nature Reviews Microbiology, 2020, 18 (8), pp.428-445. ⟨10.1038/s41579-020-0364-5⟩ Article dans une revue hal-04394809v1
Disentangling the mechanisms shaping the surface ocean microbiota Ramiro Logares,Ina M Deutschmann,Pedro C Junger,Caterina R Giner,Anders K Krabberødet al. Microbiome, 2020, 8 (1), pp.55. ⟨10.1186/s40168-020-00827-8⟩ Article dans une revue hal-02557469v1
An assessment of environmental metabarcoding protocols aiming at favoring contemporary biodiversity in inventories of deep-sea communities Miriam Brandt,Blandine Trouche,Nicolas Henry,Cathy Liautard-Haag,Lois Maignienet al. Frontiers in Marine Science, 2020, 7, pp.234. ⟨10.3389/fmars.2020.00234⟩ Article dans une revue hal-03410860v1
Biogeography of marine giant viruses reveals their interplay with eukaryotes and ecological functions Hisashi Endo,Romain Blanc-Mathieu,Yanze Li,Guillem Salazar,Nicolas Henryet al. Nature Ecology & Evolution, 2020, 4 (12), pp.1639-1649. ⟨10.1038/s41559-020-01288-w⟩ Article dans une revue hal-02974168v1
Expanding Tara Oceans Protocols for Underway, Ecosystemic Sampling of the Ocean-Atmosphere Interface During Tara Pacific Expedition (2016–2018) Gabriel Gorsky,Guillaume Bourdin,Fabien Lombard,Maria Luiza Pedrotti,Samuel Audrainet al. Frontiers in Marine Science, 2019, 6, pp.650. ⟨10.3389/fmars.2019.00750⟩ Article dans une revue hal-02407578v1
The Tara Pacific expedition-A pan-ecosystemic approach of the &quot;-omics&quot; complexity of coral reef holobionts across the Pacific Ocean Serge Planes,Denis Allemand,Sylvain Agostini,Bernard Banaigs,Emilie Boissinet al. PLoS Biology, 2019, 17 (9), pp.e3000483. ⟨10.1371/journal.pbio.3000483⟩ Article dans une revue hal-02402685v1
Marine DNA viral macro- and microdiversity from Pole to Pole Ann Gregory,Ahmed Zayed,Nádia Conceição-Neto,Ben Temperton,Ben Bolducet al. Cell, 2019, 177 (5), pp.1109-1123.e14. ⟨10.1016/j.cell.2019.03.040⟩ Article dans une revue hal-02387010v1
Global Trends in Marine Plankton Diversity across Kingdoms of Life Federico Ibarbalz,Nicolas Henry,Manoela Brandão,Severine Martini,Greta Busseniet al. Cell, 2019, 179 (5), pp.1084-1097.e21. ⟨10.1016/j.cell.2019.10.008⟩ Article dans une revue hal-03094778v1
Community‐Level Responses to Iron Availability in Open Ocean Plankton Ecosystems Luigi Caputi,Quentin Carradec,Damien Eveillard,Amos Kirilovsky,Éric Pelletieret al. Global Biogeochemical Cycles, 2019, 33 (3), pp.391-419. ⟨10.1029/2018GB006022⟩ Article dans une revue hal-02999805v1
Genetic and morphological divergence in the warm-water planktonic foraminifera genus Globigerinoides Raphael Morard,Angelina Füllberg,Geert-Jan Brummer,Mattia Greco,Lukas Jonkerset al. PLoS ONE, 2019, 14 (12), pp.e0225246. ⟨10.1371/journal.pone.0225246⟩ Article dans une revue hal-02412791v1
Single cell genomics yields a wide diversity of small planktonic protists across major ocean ecosystems M. E Sieracki,N. J Poulton,O. Jaillon,P. Wincker,Colomban de Vargaset al. Scientific Reports, 2019, 9, pp.6025. ⟨10.1038/s41598-019-42487-1⟩ Article dans une revue hal-02113815v1
Coupling between taxonomic and functional diversity in protistan coastal communities Pierre Ramond,Marc Sourisseau,Nathalie Simon,Sarah Romac,Sophie Schmittet al. Environmental Microbiology, 2019, 21 (2), pp.730-749. ⟨10.1111/1462-2920.14537⟩ Article dans une revue hal-03971181v1
Observational Needs Supporting Marine Ecosystems Modeling and Forecasting: From the Global Ocean to Regional and Coastal Systems Antonietta Capotondi,Michael Jacox,Chris Bowler,Maria Kavanaugh,Patrick Lehodeyet al. Frontiers in Marine Science, 2019, 6, pp.623. ⟨10.3389/fmars.2019.00623⟩ Article dans une revue hal-02316446v1
A global ocean atlas of eukaryotic genes Quentin Carradec,Eric Pelletier,Corinne da Silva,Adriana A. Alberti,Yoann Seeleuthneret al. Nature Communications, 2018, 9 (1), pp.373. ⟨10.1038/s41467-017-02342-1⟩ Article dans une revue cea-01874711v1
An improved primer set and amplification protocol with increased specificity and sensitivity targeting the Symbiodinium ITS2 region Benjamin C C Hume,Maren Ziegler,Julie Poulain,Xavier Pochon,Sarah Romacet al. PeerJ, 2018, 6, pp.e4816. ⟨10.7717/peerj.4816⟩ Article dans une revue hal-01822910v1
Worldwide Occurrence and Activity of the Reef-Building Coral Symbiont Symbiodinium in the Open Ocean Johan Decelle,Quentin Carradec,Xavier Pochon,Nicolas Henry,Sarah Romacet al. Current Biology, 2018, 28 (22), pp.3625-3633.e3. ⟨10.1016/j.cub.2018.09.024⟩ Article dans une revue hal-02194113v1
Nanoplanktonic diatoms are globally overlooked but play a role in spring blooms and carbon export Karine Leblanc,Bernard Queguiner,Frederic Diaz,Veronique Cornet,Mónica Michel-Rodriguezet al. Nature Communications, 2018, 9 (1), pp.953. ⟨10.1038/s41467-018-03376-9⟩ Article dans une revue hal-02006275v1
Ubiquitous abundance distribution of non-dominant plankton across the global ocean Enrico Ser-Giacomi,Lucie Zinger,Shruti Malviya,Colomban de Vargas,Eric Karsentiet al. Nature Ecology & Evolution, 2018, 2 (8), pp.1243-1249. ⟨10.1038/s41559-018-0587-2⟩ Article dans une revue hal-02364756v1
Diatom diversity through HTS-metabarcoding in coastal European seas Roberta Piredda,Jean-Michel Claverie,Johan Decelle,Colomban de Vargas,Micah Dunthornet al. Scientific Reports, 2018, 8 (1), pp.18059 (2018). ⟨10.1038/s41598-018-36345-9⟩ Article dans une revue hal-01978355v1
The epibiotic life of the cosmopolitan diatom Fragilariopsis doliolus on heterotrophic ciliates in the open ocean Flora J. Vincent,Sébastien Colin,Sarah Romac,Eleonora Scalco,Lucie Bittneret al. The International Society of Microbiologial Ecology Journal, 2018, 12 (4), pp.1094 - 1108. ⟨10.1038/s41396-017-0029-1⟩ Article dans une revue hal-01762501v1
Surface ocean metabarcoding confirms limited diversity in planktonic foraminifera but reveals unknown hyper-abundant lineages Raphael Morard,Marie-José Garet-Delmas,Frédéric Mahé,Sarah Romac,Julie Poulainet al. Scientific Reports, 2018, 8, pp.2539. ⟨10.1038/s41598-018-20833-z⟩ Article dans une revue hal-01718031v1
Neobodonids are dominant kinetoplastids in the global ocean Olga Flegontova,Pavel Flegontov,Shruti Malviya,Julie Poulain,Colomban de Vargaset al. Environmental Microbiology, 2018, 20 (2), pp.878-889. ⟨10.1111/1462-2920.14034⟩ Article dans une revue cea-02291359v1
Metabarcoding analysis on European coastal samples reveals new molecular metazoan diversity David López-Escardó,Jordi Paps,Colomban de Vargas,Ramon Massana,Iñaki Ruiz-Trilloet al. Scientific Reports, 2018, 8, pp.9106. ⟨10.1038/s41598-018-27509-8⟩ Article dans une revue hal-01829946v1
Single-cell genomics of multiple uncultured stramenopiles reveals underestimated functional diversity across oceans Yoann Seeleuthner,Samuel Mondy,Vincent Lombard,Quentin Carradec,Eric Pelletieret al. Nature Communications, 2018, 9, pp.310. ⟨10.1038/s41467-017-02235-3⟩ Article dans une revue hal-01771839v1
EukRef: Phylogenetic curation of ribosomal RNA to enhance understanding of eukaryotic diversity and distribution Javier del Campo,Martin Kolisko,Vittorio Boscaro,Luciana Santoferrara,Serafim Nenarokovet al. PLoS Biology, 2018, 16 (9), pp.e2005849. ⟨10.1371/journal.pbio.2005849⟩ Article dans une revue hal-03971662v2
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Worldwide Genotyping in the Planktonic Foraminifer Globoconella inflata: Implications for Life History and Paleoceanography Raphaël Morard,Frédéric Quillévéré,Christophe Jean Douady,Colomban de Vargas,Thibault de Garidel-Thoronet al. PLoS ONE, 2011, 6 (10), pp.e26665. ⟨10.1371/journal.pone.0026665⟩ Article dans une revue hal-00657029v1
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